TCONS_00059074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059074
Unique NameTCONS_00059074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059074 ID=TCONS_00059074|Name=TCONS_00059074|organism=Clytia hemisphaerica|type=transcript|length=676bp
AATAGGTCCATAAAACTATTATAGCTTTTTGATGTCTCATTTTAGTGAAa
tcatttataaaaaatcagaaatggTTGATCGTATTGAATTTAAAGAATTG
GAAACTGAAGAAGTTCCAGTTACTTCGGCTGTCTTACTTGGTGCTGCACA
TCATTTAGgtACCTATTGTAATAAAGATTTCACTACTTTTGTTCAAAAAC
GTTTTGAAACGAAAGACCCACGTGCAACTTTGGATGAAGGAAAGGCGGTC
ACAAATTGTGCCTTGGAGTTTTTTCGTAAATTGAAAGCTGCTTGTAATAA
AGAATTCACTGATCACTGGACATGTTTAGATTATAATAACCAATATTATG
GACAATGTAGAAAAACACAGAAAGTCTACGATGAGTGTGTGTTGAAAAAT
CTTGGCCTTGAAAGTAAACAATCTGATATTTATGgcaaattttaatttaa
aatcaaaaactttcaaaatattttagagatatttttttgtgaatttttat
taatttcaatattttgagacctttattgaaaaaaatactaagtGTGTTTA
GTTTTGTTTATCATGACATGTTGATGATCGATCTGTTTTATTATCATTTG
TTGAAAAACTTTGTCCTAGAATATTGCCACTCAGATAGGCAAGGGCACCC
TGGCTGCAACAGTTTTTCATCTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00059074-protein

>TCONS_00059074-protein ID=TCONS_00059074-protein|Name=TCONS_00059074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MSHFSEIIYKKSEMVDRIEFKELETEEVPVTSAVLLGAAHHLGTYCNKDF
TTFVQKRFETKDPRATLDEGKAVTNCALEFFRKLKAACNKEFTDHWTCLD
YNNQYYGQCRKTQKVYDECVLKNLGLESKQSDIYGKF
Run BLAST on NCBI

transcript from alignment at scaffold_316:180360..181385-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059074 ID=TCONS_00059074|Name=TCONS_00059074|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at scaffold_316:180360..181385- (Clytia hemisphaerica)
AATAGGTCCATAAAACTATTATAGCTTTTTGATGTCTCATTTTAGTGAAA
TCATTTATAAAAAATCAGAAATGGTTGATCGTATTGAATTTAAAGAATTG
GAAACTGAAGAAGTTCCAGTTACTTCGGCTGTCTTACTTGGTGCTGCACA
TCATTTAGGTATTCCTTGAATTTCACCTTATTACGCAGAAATAATATAAG
TAGACACATATGAACGGCCTCGAAATTAACATGCAAAGAAATTAACACCA
ATTTTATTTGTTTGTTCAATGACACCACGGCTGGTTTTAATAAAAGGGAG
TTTAATCAACACGAAATTTCTTAGTTCGTGTTAGTTACATGTCTACATAT
TTTCATGTAGTAAGGTACTTAAAATTTTTCTGGTTTTCAATTCATTAAAA
AAGCTAACTAAGGCAAAATTGATTTACACAATATCCTGTAAACAGCTATA
AGACATTAATGGAATCCGATTATTTTATTTCTAAATGATATTATTTCATT
TTTTTCAGGTACCTATTGTAATAAAGATTTCACTACTTTTGTTCAAAAAC
GTTTTGAAACGAAAGACCCACGTGCAACTTTGGATGAAGGAAAGGCGGTC
ACAAATTGTGCCTTGGAGTTTTTTCGTAAATTGAAAGCTGCTTGTAATAA
AGAATTCACTGATCACTGGACATGTTTAGATTATAATAACCAATATTATG
GACAATGTAGAAAAACACAGAAAGTCTACGATGAGTGTGTGTTGAAAAAT
CTTGGCCTTGAAAGTAAACAATCTGATATTTATGGCAAATTTTAATTTAA
AATCAAAAACTTTCAAAATATTTTAGAGATATTTTTTTGTGAATTTTTAT
TAATTTCAATATTTTGAGACCTTTATTGAAAAAAATACTAAGTGTGTTTA
GTTTTGTTTATCATGACATGTTGATGATCGATCTGTTTTATTATCATTTG
TTGAAAAACTTTGTCCTAGAATATTGCCACTCAGATAGGCAAGGGCACCC
TGGCTGCAACAGTTTTTCATCTTGAG

Coding sequence (CDS) from alignment at scaffold_316:180360..181385-

>TCONS_00059074 ID=TCONS_00059074|Name=TCONS_00059074|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_316:180360..181385- (Clytia hemisphaerica)
GTACCTATTGTAATAAAGATTTCACTACTTTTGTTCAAAAACGTTTTGAA
ACGAAAGACCCACGTGCAACTTTGGATGAAGGAAAGGCGGTCACAAATTG
TGCCTTGGAGTTTTTTCGTAAATTGAAAGCTGCTTGTAATAAAGAATTCA
CTGATCACTGGACATGTTTAGATTATAATAACCAATATTATGGACAATGT
AGAAAAACACAGAAAGTCTACGATGAGTGTGTGTTGAAAAATCTTGGCCT
TGAAAGTAAACAATCTGATATTTATGGCAAATTTTAAATGTCTCATTTTA
GTGAAATCATTTATAAAAAATCAGAAATGGTTGATCGTATTGAATTTAAA
GAATTGGAAACTGAAGAAGTTCCAGTTACTTCGGCTGTCTTACTTGGTGC
TGCACATCATTTAGGTACCTATTGTAATAAAGATTTCACTACTTTTGTTC
AAAAACGTTTTGAAACGAAAGACCCACGTGCAACTTTGGATGAAGGAAAG
GCGGTCACAAATTGTGCCTTGGAGTTTTTTCGTAAATTGAAAGCTGCTTG
TAATAAAGAATTCACTGATCACTGGACATGTTTAGATTATAATAACCAAT
ATTATGGACAATGTAGAAAAACACAGAAAGTCTACGATGAGTGTGTGTTG
AAAAATCTTGGCCTTGAAAGTAAACAATCTGATATTTATGGCAAATTTTA
AATGTCTCATTTTAGTGAAATCATTTATAAAAAATCAGAAATGGTTGATC
GTATTGAATTTAAAGAATTGGAAACTGAAGAAGTTCCAGTTACTTCGGCT
GTCTTACTTGGTGCTGCACATCATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037203XLOC_037203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059074-proteinTCONS_00059074-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059074-exon-scaffold_316-1575043694:181228..181385TCONS_00059074-exon-scaffold_316-1575043694:181228..181385Clytia hemisphaericaexon
TCONS_00059074-exon-scaffold_316-1575043694:180360..180877TCONS_00059074-exon-scaffold_316-1575043694:180360..180877Clytia hemisphaericaexon
TCONS_00059074-exon-scaffold_316-1510915933:181228..181385TCONS_00059074-exon-scaffold_316-1510915933:181228..181385Clytia hemisphaericaexon
TCONS_00059074-exon-scaffold_316-1510915933:180360..180877TCONS_00059074-exon-scaffold_316-1510915933:180360..180877Clytia hemisphaericaexon
TCONS_00059074-exon-scaffold_316-1491911889:181228..181385TCONS_00059074-exon-scaffold_316-1491911889:181228..181385Clytia hemisphaericaexon
TCONS_00059074-exon-scaffold_316-1491911889:180360..180877TCONS_00059074-exon-scaffold_316-1491911889:180360..180877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:180360..181385 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
192.659	192.614	179.689	198.771	77.1442	57.3983	88.685	97.4731	117.793	92.6978	100.981	93.6518	75.6863	75.9775	98.8291	101.429	134.249	156.423	43.6089	37.9435	151.31	136.931	124.909	123.221	75.0399	86.7715	110.003	89.716	91.2344	78.4349
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010625CHCH
Blast
[Close]
BLAST of TCONS_00059074 vs. Swiss-Prot (Human)
Match: NDUA8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Homo sapiens GN=NDUFA8 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.805e-31
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 2 
Query:   71 MVDRIEFKELETEEVPVTSAVLLGAAHHLGTYCNKDFTTFVQKRFETKDPRATLDEGKAVTNCALEFFRKLKAACNKEFTDHWTCLDY-NNQYYGQCRKTQKVYDECVLKNLG 406
            +V+    +EL+ +EV ++SAVL  AAHH G  C+K    F+  R+E KDPR  L+EGK V  CAL+FFR++K  C + FT++WTC+DY   Q +  CRK Q  +DECVL  LG
Sbjct:    4 IVELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDECVLDKLG 116
The following BLAST results are available for this feature:
BLAST of TCONS_00059074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUA86.805e-3148.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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