|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059756 ID=TCONS_00059756|Name=TCONS_00059756|organism=Clytia hemisphaerica|type=transcript|length=1166bp
CCAATTTCCAAGTTTCGTTTTCGATCAATGAATCGTACTCATTTTGGATA
GCGTCCTTCCAAAGTTCAGCATTCGGGCTGGACAATGCCTCCTCAATGGT
GGTTGGTTCCTCTTCGTCAACTATGGCGATCGATGCAGCATCCATCAGAT
TCCACCATTCACCAGTCAGGACGTTTAGTCTCTCAGGCGGTCTCCTTGTG
CGTACAGGTCTAGCATCTGGGCGATTTTCCGGGTTGTCTTCAGGTTCGTC
TGGTTCGGTCGATTCAGGAAAGAATTCAAAGTTTGAATTAGTACCGTCAA
ACTTTTCGATATCGAAATCCTTTTCCACAAAGGTTACGTCTCGGCTTCGG
AACATTTTTCTGGTTTGTGGGTCGTAAAACTTGAATCCATTTTCGTTTGA
TGGGTAACCGACAAATATACATGAAATCGATTTCTTGTCGAACTTTCCTT
TGCGTTTGGTATCTGGAACGTGTACGTAGGACTTACATCCNNNNNNNNNN
NNNNTCACGCGAGATTCCACGGTCGGTGCAAAAACTTGTGAATTCGGTCG
ACGTATATTCACCACCATTATCAGAACGTAAACGTTGGATAGTTTGGTTC
TCTACGTTCAGCCGTTTAACTTTCAGTCCCGTTCGATTCTCGACAAGATT
TACAAATTCGGTAAATTTAGCCAACACTTCTGATTTATGCTTCATCATAT
AAACGGTCGTATATCTGGAGTAATCGTCGATAAACGTAACGAAATACCTG
GAACCTCCCACTGAAGGTACATCCATTGGACCACAAACGTCACTGTGGAT
CAATTCAAGTAATCCCTTTGTGGTGTTCATCGATTTCTTCGGGAACGGTT
GTCGATGTTGCTTCCCCATCGCGCAACCTTCACAGTTTCGATTGACTGTC
TCCTCCAAGTCGAAATTAAGGCCGTTGACCATTTCCTTCTtgttcagtaa
ttttaagttgTCATAGCCGAGATGACCATATCGTTGGTGCCATAAATCGA
TTTCGTCCATTGCGTTTCCAATATAGCAAGTCTGATCAGAATTTATCGTG
TTCAGTTTATAAAGTTTACCGTGTTTCTTTCCGACGCTATAACGTTTTCC
TTCGATGGATATTCCGCAAGAGTCTCCCTGGAAATCAACGATATATCCTT
TTTCGGTAACAGCCGG Run BLAST on NCBI protein sequence of TCONS_00059756-protein >TCONS_00059756-protein ID=TCONS_00059756-protein|Name=TCONS_00059756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
PAVTEKGYIVDFQGDSCGISIEGKRYSVGKKHGKLYKLNTINSDQTCYIG
NAMDEIDLWHQRYGHLGYDNLKLLNKKEMVNGLNFDLEETVNRNCEGCAM
GKQHRQPFPKKSMNTTKGLLELIHSDVCGPMDVPSVGGSRYFVTFIDDYS
RYTTVYMMKHKSEVLAKFTEFVNLVENRTGLKVKRLNVENQTIQRLRSDN
GGEYTSTEFTSFCTDRGISRXXXXXXM Run BLAST on NCBI transcript from alignment at scaffold_330:34342..35507 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059756 ID=TCONS_00059756|Name=TCONS_00059756|organism=Clytia hemisphaerica|type=transcript|length=1166bp|location=Sequence derived from alignment at scaffold_330:34342..35507 (Clytia hemisphaerica)
CCGGCTGTTACCGAAAAAGGATATATCGTTGATTTCCAGGGAGACTCTTG
CGGAATATCCATCGAAGGAAAACGTTATAGCGTCGGAAAGAAACACGGTA
AACTTTATAAACTGAACACGATAAATTCTGATCAGACTTGCTATATTGGA
AACGCAATGGACGAAATCGATTTATGGCACCAACGATATGGTCATCTCGG
CTATGAcaacttaaaattactgaacaAGAAGGAAATGGTCAACGGCCTTA
ATTTCGACTTGGAGGAGACAGTCAATCGAAACTGTGAAGGTTGCGCGATG
GGGAAGCAACATCGACAACCGTTCCCGAAGAAATCGATGAACACCACAAA
GGGATTACTTGAATTGATCCACAGTGACGTTTGTGGTCCAATGGATGTAC
CTTCAGTGGGAGGTTCCAGGTATTTCGTTACGTTTATCGACGATTACTCC
AGATATACGACCGTTTATATGATGAAGCATAAATCAGAAGTGTTGGCTAA
ATTTACCGAATTTGTAAATCTTGTCGAGAATCGAACGGGACTGAAAGTTA
AACGGCTGAACGTAGAGAACCAAACTATCCAACGTTTACGTTCTGATAAT
GGTGGTGAATATACGTCGACCGAATTCACAAGTTTTTGCACCGACCGTGG
AATCTCGCGTGANNNNNNNNNNNNNNGGATGTAAGTCCTACGTACACGTT
CCAGATACCAAACGCAAAGGAAAGTTCGACAAGAAATCGATTTCATGTAT
ATTTGTCGGTTACCCATCAAACGAAAATGGATTCAAGTTTTACGACCCAC
AAACCAGAAAAATGTTCCGAAGCCGAGACGTAACCTTTGTGGAAAAGGAT
TTCGATATCGAAAAGTTTGACGGTACTAATTCAAACTTTGAATTCTTTCC
TGAATCGACCGAACCAGACGAACCTGAAGACAACCCGGAAAATCGCCCAG
ATGCTAGACCTGTACGCACAAGGAGACCGCCTGAGAGACTAAACGTCCTG
ACTGGTGAATGGTGGAATCTGATGGATGCTGCATCGATCGCCATAGTTGA
CGAAGAGGAACCAACCACCATTGAGGAGGCATTGTCCAGCCCGAATGCTG
AACTTTGGAAGGACGCTATCCAAAATGAGTACGATTCATTGATCGAAAAC
GAAACTTGGAAATTGG Coding sequence (CDS) from alignment at scaffold_330:34342..35507 >TCONS_00059756 ID=TCONS_00059756|Name=TCONS_00059756|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_330:34342..35507 (Clytia hemisphaerica)
CCGGCTGTTACCGAAAAAGGATATATCGTTGATTTCCAGGGAGACTCTTG
CGGAATATCCATCGAAGGAAAACGTTATAGCGTCGGAAAGAAACACGGTA
AACTTTATAAACTGAACACGATAAATTCTGATCAGACTTGCTATATTGGA
AACGCAATGGACGAAATCGATTTATGGCACCAACGATATGGTCATCTCGG
CTATGAcaacttaaaattactgaacaAGAAGGAAATGGTCAACGGCCTTA
ATTTCGACTTGGAGGAGACAGTCAATCGAAACTGTGAAGGTTGCGCGATG
GGGAAGCAACATCGACAACCGTTCCCGAAGAAATCGATGAACACCACAAA
GGGATTACTTGAATTGATCCACAGTGACGTTTGTGGTCCAATGGATGTAC
CTTCAGTGGGAGGTTCCAGGTATTTCGTTACGTTTATCGACGATTACTCC
AGATATACGACCGTTTATATGATGAAGCATAAATCAGAAGTGTTGGCTAA
ATTTACCGAATTTGTAAATCTTGTCGAGAATCGAACGGGACTGAAAGTTA
AACGGCTGAACGTAGAGAACCAAACTATCCAACGTTTACGTTCTGATAAT
GGTGGTGAATATACGTCGACCGAATTCACAAGTTTTTGCACCGACCGTGG
AATCTCGCGTGANNNNNNNNNNNNNNGGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059756-exon-scaffold_330-1491911889:34342..35507 | TCONS_00059756-exon-scaffold_330-1491911889:34342..35507 | Clytia hemisphaerica | exon |
| TCONS_00059756-exon-scaffold_330-1510915933:34342..35507 | TCONS_00059756-exon-scaffold_330-1510915933:34342..35507 | Clytia hemisphaerica | exon |
| TCONS_00059756-exon-scaffold_330-1575043694:34342..35507 | TCONS_00059756-exon-scaffold_330-1575043694:34342..35507 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:34342..35507 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
