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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059859 ID=TCONS_00059859|Name=TCONS_00059859|organism=Clytia hemisphaerica|type=transcript|length=2464bpRun BLAST on NCBI protein sequence of TCONS_00059859-protein >TCONS_00059859-protein ID=TCONS_00059859-protein|Name=TCONS_00059859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp MLLIILSLIGLSFVQGLPGIVETVAGGGPSHKGKDSECNNFERSKDGVGSRun BLAST on NCBI transcript from alignment at scaffold_331:1172250..1201088+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059859 ID=TCONS_00059859|Name=TCONS_00059859|organism=Clytia hemisphaerica|type=transcript|length=28839bp|location=Sequence derived from alignment at scaffold_331:1172250..1201088+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:1172250..1201088+ >TCONS_00059859 ID=TCONS_00059859|Name=TCONS_00059859|organism=Clytia hemisphaerica|type=CDS|length=17784bp|location=Sequence derived from alignment at scaffold_331:1172250..1201088+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059859 vs. Swiss-Prot (Human)
Match: NHLC2 (NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 3.053e-19 Identity = 92/315 (29.21%), Postives = 147/315 (46.67%), Query Frame = 3
Query: 612 KDGVGSQARFNYPWGIAFDIHNNQVYVADCGCMDSEHRTDLIRRIDLKTHQVTTVAG-STQGFRDGFGHEAHFQHIAGIL------LDPELE---MLYIADSGNNRIRVMYLSNYKVDTIAGLSSKGFVDQSVLSSH-------------FNNPQSLALMRDKDSKRSLFVSDTDNHAIRVVHLESDNTGDVKTIAGGNK--------GFKDGYKLNARFYFPTQITIDSLGQYVYISDHYNHAIRRLEISNGLVTTLSSEGFQIRLDKGAPSPATPTGRPVTIHYPEGIIYDPDYEALYVCEFQTHVIQVVNLK 1463
KDG+ S++ FN P G+A I NN +YVAD LIR+IDL+ +V+TVAG QG G + Q I+ E++ +L+IA +G ++I + L + K+ L +KG + S + F P L+L + D LFV+D+++ +R V L+ G VK + GG + G DG +NA+ P +T D +Y++D YNH I+ ++ TTL+ G D + ++ T T + P G+ + E LYV + H I+V++L+
Sbjct: 269 KDGIFSESTFNSPQGVA--IMNNIIYVADT-------ENHLIRKIDLEAEKVSTVAGIGIQGTDKEGGAKGEQQPISSPWDVVFGTSGSEVQRGDILWIAMAGTHQIWALLLDSGKLPKKNEL-TKGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASE-DPWSCLFVADSESSTVRTVSLKD---GAVKHLVGGERDPMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTG-----DTNNVTSSSFTES--TFNEPGGLCIGENGELLYVADTNNHQIKVMDLE 562 HSP 2 Score: 88.9669 bits (219), Expect = 4.365e-18 Identity = 79/288 (27.43%), Postives = 129/288 (44.79%), Query Frame = 3
Query: 843 ILLDPELEMLYIADSGNNRIRVMYLSNYKVDTIAGLSSKGFVDQSVLSSHFNNPQSLALMRDKDSKRSLFVSDTDNHAIRVVHLESDNTGDVKTIA-------GGNKGFKDGYKLNARFYFPTQITIDSLGQYVYISDHYNHAIRRL-----------EISNGLVTTLSSEGFQIRLDKGAPSPA---TPTGRPVTIHYPEGIIYDPDYEALYVCEFQTHVIQVVNLK-GFVKPLAGSGFQ-------GRKDGVGQTAKFYHPSGMTFDRKSRRLFVSDQYNHLVRSI 1619
+ +D + L IAD+G++RI V++ N ++ G + G D S FN+PQ +A+M + ++V+DT+NH IR + LE++ V I GG KG + F T + G ++I+ H I L E++ G + G + + P A P+G + P + L+V + ++ ++ V+LK G VK L G G DGVG AK HP G+T+D+K L+V+D YNH ++ +
Sbjct: 229 VTVDQVTDRLVIADTGHHRILVVW-KNGQIQYSIGGPNPGRKDGIFSESTFNSPQGVAIMNN-----IIYVADTENHLIRKIDLEAEKVSTVAGIGIQGTDKEGGAKGEQQPISSPWDVVFGTSGSEVQRGDILWIAMAGTHQIWALLLDSGKLPKKNELTKGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASEDP--------WSCLFVADSESSTVRTVSLKDGAVKHLVGGERDPMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVV 502 The following BLAST results are available for this feature:
BLAST of TCONS_00059859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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