TCONS_00060626 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060626
Unique Name	TCONS_00060626
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1267

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_348:30162..34005+
coding sequence from alignment at scaffold_348:30162..34005+

transcript sequence

>TCONS_00060626 ID=TCONS_00060626|Name=TCONS_00060626|organism=Clytia hemisphaerica|type=transcript|length=1267bp
ATATGAGCGGCGGAGAGTTTGAAAATCATTCCCATCTCTAGCATCTTGTG
GAGAAAAGGAATAAATAGAGCATAAGTGAAAAAGAAGTATTCTCTCTTGA
AAGCAATCATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGT
CAATCTTACGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGC
AAACACTGACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCT
GCAAAGAGGGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGC
CGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTC
TTTCACTTGTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaaca
acATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAA
GACGGAATCGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaa
attctgtaaaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACG
GAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAAT
GGATTCAATGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGT
CAGATGTCTTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTT
GTCAATGCAAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGT
CACCCTAACCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGC
CATCAAATGTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAA
GTGTCAAAGAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGT
ATTATGGGAACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCG
TGCTCAATGCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTT
ACTGgtaaattttgtgaatattttagACTAGTTCAATTCACAATGAAATT
TCAATAATTCGTTAGAATTTGAagcttttcagactttttttcaCTCTTTA
CGGAAAAAATTGTTCCTGGACCTAATAGAATAAGATAAATCATTCCTTTT
TTCTCTTTGGATCTTTTTAGTTTGTTGTCCTTTTTTTGTTACTCGTttta
taacttttacaaaatacTTTTGATGGACAAGAGAAGTTGTTACTTGTGac
aaattcttaattttttt

Run BLAST on NCBI

protein sequence of TCONS_00060626-protein

>TCONS_00060626-protein ID=TCONS_00060626-protein|Name=TCONS_00060626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MRSLAILLAVTIIGQSYAGYLGCYRKPCVAANTDRCENKPYGRYQCICKE
GFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNID
DCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGT
CEDGIASFTCKCKNGFNGKFCKNNIDDCKRVRCLNGGTCKDGIASFTCQC
KPGFSGKFCQVPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVK
ECNYHCSRQRGWCRIMGTDGRIYDNYCQFERAQCKNKSLQIKKKLCGYW

Run BLAST on NCBI

transcript from alignment at scaffold_348:30162..34005+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060626 ID=TCONS_00060626|Name=TCONS_00060626|organism=Clytia hemisphaerica|type=transcript|length=3844bp|location=Sequence derived from alignment at scaffold_348:30162..34005+ (Clytia hemisphaerica)
ATATGAGCGGCGGAGAGTTTGAAAATCATTCCCATCTCTAGCATCTTGTG
GAGAAAAGGAATAAATAGAGCATAAGTGAAAAAGAAGTATTCTCTCTTGA
AAGGTAAGTGATTTGGACATTATTTCAATCTAATATTGATTTCATTATTT
AAAGTGAATTTCATAATTGTCAAGTCAAATTCTCTTTCAGAAACAGGTTT
TTTATAAGTCCAGCAATCCCTTATGAAGTTTCCATAACtctagaaaattt
gatttttccagTTGAGGAGAAGAATCTCTTCACTGTATACTGCTTATCTT
CTGgctctgaaaattcaaaaagaaaaggatttagcattttctcaactttt
ttatTCAGCAATCATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCA
TTGGTCAATCTTACGCAGGTATTGTTTATTGTTGTTATtcaatcttattc
aatttttatctcaattaaagggacataaaagtagcaaaatgtaaacattg
cacgaaccacgtgtcattaaagagaacaattaaaaccacgggtccaaaac
aaacttgtaaaacaattgaataatcaaaattagccatatttgctttgatt
tttttattttgacatttgttttgattttgtatccgcagcatacagtttgt
ttacaaatttcgcacgtactgttatgtccctttaaatattGCGAAAAATC
CTCTCGCTGTTCTTGAGACCTTCTAGGTCCCATTGATATTTTTGGGGGGG
TTTAGGGAGGTAATTcaaggaaatttttcaaaattattaaaacatCTGTA
ATTTTCAATTGTCAAGACATTTGTTATCACTAAGGAAAATTTAATGTGTT
AAACATTGTAAAACCTGGGAGAGCGGGGTCAAATCAGTGAATAACATTTC
TTCCAACAACCAAGGGATCTTAAGATGTTATAGCTTCCATAGAAACAACT
TTGTAAgatttttaacttaaaaaaatcgTGTATTCTAACGTAACTCCACA
ATAAGATAACTCGAAAAATTAGCTATTTCATtacattttctttaatttca
gGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTGACCG
ATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAGGGAT
TCTCTGGTCGCAGATGTGAAACAAGTAAGTCATCTTTCTTTATGGATGAG
CTGTGAAGTGTTTGAATTCTATGATACACATGAGATAAAAAGATTATTAT
AGTTTATGTATCAGATGTCAAACAATTACGTCATTCCTTATTTacacaaa
aattgtttttagctCTGGTTTCTAATTGTTATTGTGAATTATGAAGTGGG
CAGAAAGTTTGCTAACTTTGTGTGCACTCTAATAATAAGAATAAATAGGT
CAGAATGTCACCATGCATGCCAGTGTGATGAATATAAGAAGggatttcta
tgtttttttcaaagaaatttaaaaccTTACGGCGAGTCTTTCAAAGGGGT
CATCAGAcagtttgatattttttctggCCTGTAAAATCATTCCCACAATC
CTGAACGAAAGCTCTGAATCCCGGGGGAGGATACTTAGACAAATGGAGGG
TAGGGTATTTGGCACCCTTCACAATACCATaattggatttccaaagtccc
ggtaagggtaggaaaaaacagaaaatcaaattgcagtcccactaagggta
gaagaaataggaaaaattcaactttttacccccagaaagatagaaattta
gtCAAAATTAGTCCCGGTAAGcctcgtaaaattcacaaaattttcgtTTG
TCGAGGGTTGGGCATCATCCCCCCGTCAgttcgcaaccctagtacccccc
ccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGTCAATGTGTTAGACATGATGTT
TTGCCTTATTGCCAATGTTTTTAAATGATTTAATACTttgggtttttttt
tctgaaatagaTGACGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGG
AACCTGCGAAGACGGAATTGCTTCTTTCACTTGCAAATGCAAGAACGGAT
TCAATGgaaaattctgtaaaaacaacATCGATGATTGCCGAGGTGTCAAA
TGCTTAAACGGAGGAACCTGCGAAGACGGAATCGATTCTTTCACTTGCAA
ATGTAAGAATGGATTCAATGgaaaattctgtaaaaacaacATCGATGATT
GCAAAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCT
TCTTTCACTTGTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaa
caacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCG
AAGACGGAATCGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGgg
aaattctgtaaaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAA
CGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGA
ATGGATTCAATGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGC
GTCAGATGTCTTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCAC
TTGTCAATGCAAGCCTGGATTCTCCGGAAAATTCTgtcaaggtttgtttt
ttttcatttttttaccaatattttttgACTGCAAGTCATCTTTAAATAAT
GAGTTACAAGTTTTGCTATCAACCATTGAATTTGCTTTTAATATTTTATG
TACCAAGAGACCCGGATATTGTTTTATTTCCTATGCCACTATACAAATTC
TTGTTGAAAGTTGTATTTCCCGAAATCAGTTCTCTTAAGTGATTTATTGC
AATTTGCTTTTCTTCGACAGTTCCATCATGTCACCCTAACCCATGTCAGA
atggtggaaaatgtttgaaacatGGAAACGCCATCAAATGTTGGTGTAAA
CAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAAGGTAacattta
aaatattaaaagatcATTTTCCTTTCGATGATTAAAGTTGCAATTAAAAt
acaacaattttatttttgaaaatttatcttaaaaaatcttatttgagaaa
atgtcgaaattttttggaattttttttctttgctctTACAAAATCATTCG
ATATCAACTATTTAGAGGCTGTATTAAAAATTACTTTACGAAGTACTGAT
ATACATAATAAAGTTAACAAATCTTTCATTTGCCAGAATGCAATTACCAC
TGCAGCAGACAGCGTGGATGGTGCCGTATTATGGGAACCGACGGCCGTAT
TTATGACAACTATTGTCAATTCGAGCGTGCTCAATGCAAAAATAAATCAC
TTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaaattttgtgaatattt
tagACTAGTTCAATTCACAATGAAATTTCAATAATTCGTTAGAATTTGAa
gcttttcagactttttttcaCTCTTTACGGAAAAAATTGTTCCTGGACCT
AATAGAATAAGATAAATCATTCCTTTTTTCTCTTTGGATCTTTTTAGTTT
GTTGTCCTTTTTTTGTTACTCGTtttataacttttacaaaatacTTTTGA
TGGACAAGAGAAGTTGTTACTTGTGacaaattcttaattttttt

Coding sequence (CDS) from alignment at scaffold_348:30162..34005+

>TCONS_00060626 ID=TCONS_00060626|Name=TCONS_00060626|organism=Clytia hemisphaerica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_348:30162..34005+ (Clytia hemisphaerica)
ATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGTCAATCTTA
CGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTG
ACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAG
GGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGCCGAGGTGT
CAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTT
GTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaacATCGAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCAGATGTC
TTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGTCAATGC
AAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAA
CCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGCCATCAAAT
GTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAA
GAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGTATTATGGG
AACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCGTGCTCAAT
GCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaa
ATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGTCAATCTTA
CGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTG
ACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAG
GGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGCCGAGGTGT
CAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTT
GTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaacATCGAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCAGATGTC
TTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGTCAATGC
AAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAA
CCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGCCATCAAAT
GTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAA
GAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGTATTATGGG
AACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCGTGCTCAAT
GCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaa
ATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGTCAATCTTA
CGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTG
ACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAG
GGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGCCGAGGTGT
CAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTT
GTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaacATCGAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCAGATGTC
TTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGTCAATGC
AAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAA
CCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGCCATCAAAT
GTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAA
GAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGTATTATGGG
AACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCGTGCTCAAT
GCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaa
ATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGTCAATCTTA
CGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTG
ACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAG
GGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGCCGAGGTGT
CAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTT
GTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaacATCGAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCAGATGTC
TTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGTCAATGC
AAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAA
CCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGCCATCAAAT
GTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAA
GAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGTATTATGGG
AACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCGTGCTCAAT
GCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaa
ATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGTCAATCTTA
CGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTG
ACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAG
GGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGCCGAGGTGT
CAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTT
GTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaacATCGAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCAGATGTC
TTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGTCAATGC
AAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAA
CCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGCCATCAAAT
GTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAA
GAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGTATTATGGG
AACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCGTGCTCAAT
GCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaa
ATGAGAAGTTTGGCGATTCTTTTGGCCGTTACCATCATTGGTCAATCTTA
CGCAGGTTATCTTGGGTGCTATAGGAAACCATGCGTCGCTGCAAACACTG
ACCGATGTGAAAATAAACCATATGGACGATACCAATGTATCTGCAAAGAG
GGATTCTCTGGTCGCAGATGTGAAACAAaTGACGATGATTGCCGAGGTGT
CAAATGCTTAAACGGAGGAACCTGCGAAGACGGAATCGCTTCTTTCACTT
GTCAATGCAAACGTGGATTCAATGgaaaattctgtaaaaacaacATCGAT
GATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACCTGCGAAGACGGAAT
CGCTTCTTTCACTTGTCAATGCAAACGTGGATTCAATGggaaattctgta
aaaacaacATCGATGATTGCCGAGGTGTCAAATGCTTAAACGGAGGAACC
TGCGAAGACGGAATCGCTTCTTTCACTTGCAAATGCAAGAATGGATTCAA
TGgaaaattctgtaaaaacaacATCGATGATTGCAAGCGCGTCAGATGTC
TTAATGGAGGAACCTGCAAAGATGGGATTGCTTCTTTCACTTGTCAATGC
AAGCCTGGATTCTCCGGAAAATTCTgtcaagTTCCATCATGTCACCCTAA
CCCATGTCAGAatggtggaaaatgtttgaaacatGGAAACGCCATCAAAT
GTTGGTGTAAACAAGGCTATGAAGGAAGATTCTGTGAAACAAGTGTCAAA
GAATGCAATTACCACTGCAGCAGACAGCGTGGATGGTGCCGTATTATGGG
AACCGACGGCCGTATTTATGACAACTATTGTCAATTCGAGCGTGCTCAAT
GCAAAAATAAATCACTTCAAATCAAGAAGAAACTCTGTGGTTACTGgtaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038132	XLOC_038132	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060626-protein	TCONS_00060626-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_348	supercontig	scaffold_348:30162..34005 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.375668	0.746918	0.563674	0.144333	0	0.340223	1.0536	2.23184	0	0	0.398958	1.42287	0.000993014	0.158426	1.00129	0.875295	0.215304	0.435892	0.41517	0.672639	0	0.112133	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000742	EGF-like_dom
IPR001881	EGF-like_Ca-bd_dom
IPR013032	EGF-like_CS
IPR018097	EGF_Ca-bd_CS
IPR000152	EGF-type_Asp/Asn_hydroxyl_site
IPR002350	Kazal_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00060626 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 3.778e-46
Identity = 104/239 (43.51%), Postives = 142/239 (59.41%), Query Frame = 1

Query:  175 CYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQ 885
            C  KPC+  N   C N   G Y C C  GFSG  CE + DDC    C NGG+C DG+ +F+C C  GF G  C+ ++++C    C NGGTC D + S+TC+C+ GF+G  C+NNI++C    C NGGTC DGI SF+C C  GF G FC + I++C    CLN GTC DG+ ++ C C  G++GK CQ  V  C  +PC+N G C++     +C C  G+ G +C+     C+   SR+
Sbjct:  877 CISKPCM--NHGLCHNT-QGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSCDIAASRR 1112

HSP 2 Score: 163.696 bits (413), Expect = 8.648e-43
Identity = 100/244 (40.98%), Postives = 142/244 (58.20%), Query Frame = 1

Query:  175 CYRKPCVAANTDRCENKP-YGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQRGWC 897
            C   PC   N   C+  P +  Y C+C  G+ G+RC  + D+C    C+N G C +   S+ C+C  GF+G  C+ +IDDC    C NGG+C DG+ +F+C C  GF G  C+ ++++C    C NGGTC D + S+TCKC+ GF+G  C+NNI++C    C NGGTC DGI SF+C C  GF+G FC  ++  C  +PC N G C+      +C C  GY G+ C+T V  C+    + +G C
Sbjct:  837 CSPNPC--ENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTC 1078

HSP 3 Score: 144.436 bits (363), Expect = 2.004e-36
Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 1

Query:  190 CVAANTDRCENK-----PYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKEC 864
            C  AN++ CE+        G + C C +G++G RCE + ++C    C N  TC D I  FTC C  GF G  C+  I++C+   C+N G C D +  F C C  GF G  C+ +IDDC    CLNG  C D    + C+C  GF G  C+ NID+C    C + G C+DGI S+TC C PG+ G  C  Q+  C+ +PC N G+C+   N  +C C+ G  G  CE +  +C
Sbjct:  419 CAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDC 649

HSP 4 Score: 143.665 bits (361), Expect = 2.985e-36
Identity = 91/240 (37.92%), Postives = 128/240 (53.33%), Query Frame = 1

Query:  157 YAGYLGCYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDG--IASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKEC 864
            Y+    C   PC+  N   C     G Y+C+C  G+ G  CE + ++C    C NGGTC++ +  + C CK+GF G  C+ NID+C    CLN GTC D I+ +TC C   + GK C+  +  C    C N   C++     S+TC C  G+ G+ C  +ID+C    C+N G C +   S+ C+C PGFSG  C+  +  C  NPCQNGG C+   N   C C  G+ G  C+T + EC
Sbjct:  718 YSQVNECLSNPCIHGN---CTGGLSG-YKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNEC 953

HSP 5 Score: 135.191 bits (339), Expect = 2.064e-33
Identity = 94/224 (41.96%), Postives = 125/224 (55.80%), Query Frame = 1

Query:  214 CENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTC-EDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDC--RGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQV-PSCHPNPCQNGGKC---LKHGNAIKCWCKQGYEGRFCETSVKEC 864
            C N P G YQC C +GF+G+ C++    C    C+NGGTC + G  +F C C  GF G  C+ NIDDC   +C NGG C DG+ ++ C+C   + G+FC  ++D+C  +   C NGGTC +    + C C NG++G  C  NIDDC    C  G TC D +ASF+C C  G +G  C +  +C  NPC  G  C     +G  I C C QGY+G  C   V EC
Sbjct:  198 CLNLP-GSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYI-CTCPQGYKGADCTEDVDEC 419

HSP 6 Score: 130.568 bits (327), Expect = 5.800e-32
Identity = 101/287 (35.19%), Postives = 141/287 (49.13%), Query Frame = 1

Query:  175 CYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDC------RGVK----CLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKR-VRCLNGGTCKDGIASFTCQCKPGFSGKFCQ--VPSCHPNPCQNGGK--CLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQRGWCRIMG--TDGRIYDNYCQFERAQCKNKSLQIK 984
            C R PC   N   C  K     QC+C  G++G  C+  +  C      RGV     C + G C +   +  CQC  G+ G +C+  +D+C    C +G TC D I  + C+C  G+ G  C+  +D+C+   C NGGTC D +  F C C  G  G  C+ NIDDC R   CLNGG C D I  ++C+C PGF+G+ C+  +  C  NPC + G   C++  N   C C+  + GR CET V  C        G C +     DG I      F  A+C++   Q+K
Sbjct: 1067 CSRSPC--KNKGTCVQK-KAESQCLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSSCGQVK 1350

HSP 7 Score: 130.568 bits (327), Expect = 5.852e-32
Identity = 89/235 (37.87%), Postives = 127/235 (54.04%), Query Frame = 1

Query:  184 KPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGV-KCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTC-EDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFC--QVPSC--HPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECNY 870
            +PC+   T  C       Y+C C+ GF+G+ C+  D  C    C NG TC      F+C+C  GF G+ C+ ++++C     C +GGTC +   S+ CQC +GF G++C +    C    C+NGGTC + G  +F C C  GF G  C+ NIDDC   RC NGG C DG+ ++ C+C P ++G+FC   V  C   PN CQNGG C        C C  G+ G  C  ++ +C +
Sbjct:  113 RPCLNGGT--CHMLSRDTYECTCQVGFTGKECQWTDA-CLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAF 344

HSP 8 Score: 126.716 bits (317), Expect = 1.031e-30
Identity = 90/275 (32.73%), Postives = 125/275 (45.45%), Query Frame = 1

Query:  175 CYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRG---------------------------FNGKF------------CKNNIDDCRGV---KCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQVP--SCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECN 867
            C  +P    N   C N+  G Y C+C  G+SG  C  N DDC    C  G TC D +ASF+C C  G                            NG++            C  ++D+C       C + G C +   +F C+C +G+ G  C+ +I++C    C N  TC D I  FTC C  GF G  C+  I++C+   C+N G C D +  F C C PGF+G  CQ+    C   PC NG KC+ H N  +C C  G+ G  CE ++  C+
Sbjct:  302 CLLQPNACQNGGTCANR-NGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCD 575

HSP 9 Score: 122.865 bits (307), Expect = 1.370e-29
Identity = 89/243 (36.63%), Postives = 120/243 (49.38%), Query Frame = 1

Query:  166 YLGCYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDC--RGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIAS--FTCQCKPGFSGKFC--QVPSC---HPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECN 867
            Y+ C   PCV   T  C       ++C C  GF G  CE N DDC   +C NGG C DG+ ++ C+C   + G+FC  ++D+C  +   C NGGTC +    + C C  G++G  C  NIDDC    C  G TC D +ASF+C C  G  G  C  + D C    C  G  C     +  + C C  G+ G  C   V  C   + NPC++ GKC+    A  C C +GY G  CE  + EC+
Sbjct:  222 YVPCAPSPCVNGGT--CRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLD-DACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECH 461

HSP 10 Score: 122.094 bits (305), Expect = 2.638e-29
Identity = 92/280 (32.86%), Postives = 132/280 (47.14%), Query Frame = 1

Query:  175 CYRKPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNG-------------------------------------GTCEDGIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRVRCLNGGTCKDGIASFTCQCKPGFSGKFCQVP--SCHPNPCQNGGKCLKHGNAIKCWCKQGYEGRFCETSVKECNYHCSRQRGWC 897
            C   PC+  N  +C + P G Y+C C  GF+G  CE N D+C    C + G C+DGI S+TC C  G+ G  C + ID+C    CLN                                      G C DGI  ++C C  GF G+ C  +ID+C    C  G TC +G+  F C C  G +   C + +++C    C++ G C  G++ + C C  G+ G  C+V    C  NPCQNGG C    N  +C CK+G++G  C+ ++ EC  +    +G C
Sbjct:  536 CSSTPCL--NGAKCIDHPNG-YECQCATGFTGVLCEENIDNCDPDPC-HHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIH-GNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTC 810

HSP 11 Score: 103.99 bits (258), Expect = 1.464e-23
Identity = 92/240 (38.33%), Postives = 127/240 (52.92%), Query Frame = 1

Query:  184 KPCVAANTDRCENKPYGRYQCICKEGFSGRRCETNDDDCRGVKCLNGGTC--EDGIASFTCQCKRGFNGKFCKNNIDDCRGV--KCLNGGTCED-GIASFTCQCKRGFNGKFCKNNIDDCRGVKCLNGGTCEDGIASFTXXXXXXXXXXXXXXXIDDCKRV-RCLNGGTCKDGIASFTCQCKPGFSGKFCQ---VPSCHPNPCQNGGKCLKHGN-AIKCWCKQGYEGRFCETSVKECNYH 873
            +PCV  N   C     G   C C EGF G  C+ + D C   +C NGGTC  +  +   TC+C  GF G+ C+ +      V   CLNGGTC      ++ C C+ GF GK C+   D C    C NG TC      F+CKC  GF G+ C+ ++++C     C +GGTC +   S+ CQC  GF+G++C    VP C P+PC NGG C + G+   +C C  G+EG  CE ++ +C  H
Sbjct:   33 EPCV--NEGMCVTYHNGTGYCKCPEGFLGEYCQ-HRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHMLSRDTYECTCQVGFTGKECQWT-DACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVP-CAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNH 267

The following BLAST results are available for this feature:

BLAST of TCONS_00060626 vs. Swiss-Prot (Human)

BLAST of TCONS_00060626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOTC2	3.778e-46	43.51	Neurogenic locus notch homolog protein 2 OS=Homo s...	[more]

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TCONS_00060626 (transcript) - C. hemisphaerica