TCONS_00060627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060627
Unique NameTCONS_00060627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060627 ID=TCONS_00060627|Name=TCONS_00060627|organism=Clytia hemisphaerica|type=transcript|length=1765bp
gttttttttcaccaTTCCTTGTTTGTCTGACATCTCCTACCTTCTTTGTG
AAGTGAAGTTCTgaagTGATTTTTAGCCAAGATTGTTTTAGAAATGGACA
TCACAGAATATTTGGAGGAAAATGTAGAAACTCGTATTTTTCAATCACCT
ATCCCAGAAAGTTGTAAAAACAGTCCTTGCTGTCTAGGGATAGATGAAGC
TGGAAGAGGACCTGTTTTAGGTCCGATGGTTTATGGCATTTGTTACTGTC
CAATATCTTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGACtccaaa
acattgaaaaaagaagacagaGATAAACTTTTATCAGTAATTGAGCAAAA
CATTGAAAACATTGGATGGGCTATCAAAATTATATCACCAACCTCACTAT
CAAATGATATGCTGAGAAGCACAAAAATCAGTTTGAATGAGATTTCACAC
AATGCAGCAATTGAATTGACCAAAGTTACAATTAAAGACGGAGCTGACAT
CAAGGAGATGTATGTTGACACAGTTGGCCCAGCTCAAAAATATCAGGAca
aattatcagaaattttcaaatcaataaatGTTACTGTGACACCAAAAGCT
GATTCCAAATTCCCAATTGTCAGTGCTGCTAGTATTTGTGCTAAGgttgC
ACGTGATCAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCCCTA
CTGAATATGGGTGTGGTTATACATCAGATTCACTGACACAAAAATGGTTG
AAAGACGTCATCGATCCTGTATTTGGACATCCACAATTTGTGAGGTTTGG
CTGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGACGTTACGT
GGGAGGATGATGACGATGAGGGAAAacctaaaaagaagaaaagttccTTT
GCCATCACGTCATTCTACACTCAAgagaaaaacaaccaaaaagtTGACCA
CTGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTCTTTATGAt
aagaaattttcaactttgCAGTCAATCATTTGAGTGAACTGTTCGATTAT
TTAACTGTATCGTACAGTTTTTACGCACACACTCAAGGTGAACAATAAGG
AAATGTATTTCTTTTCGGACCATGAACCTTTACAATCATCACTGTGTACA
TGATATTAAAAGAAAGGAgtaataaatgaataaatgatTTACAAAATAAT
TTGACATTGTATTGGACATTTTGTTTCTCAACTTACTACTGCACATGgga
tcatagtcattataaaaaactcgctctggcaatgtattgttttagctttt
tgtttaattttcttttgttacaaacaaaaggcaagttgcgatttgaatac
tttttgatcacattaccaaaatctcctcttgggattggtctattttctaa
tcacatgatcaaaaagctTGCAAAATAAATCTATTTTGGTACATAAGCTC
TatctttttacaataaaaagagaaaaaagccTTCcactgtttttataatg
actatgatggGATGATGCCAATAAAGAAAATACTGTTTTTATGGATATTA
GTAAAATTAATTAACATAAACCTGACTTACCATATTGGTTGCAATCCAAA
TGCACCATTACAAATATCTGTGATATGGGTTTATTTCaagattgttttgt
ttatttataacgctgaaatatataaaaattgaaagatttttatgcTATTA
TTTGTTGagcattattttttttcatttctttatgtTAAAATAAATACTTC
AATGAATCAATCAAA
Run BLAST on NCBI

protein sequence of TCONS_00060627-protein

>TCONS_00060627-protein ID=TCONS_00060627-protein|Name=TCONS_00060627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MDITEYLEENVETRIFQSPIPESCKNSPCCLGIDEAGRGPVLGPMVYGIC
YCPISFMEELKELGFADSKTLKKEDRDKLLSVIEQNIENIGWAIKIISPT
SLSNDMLRSTKISLNEISHNAAIELTKVTIKDGADIKEMYVDTVGPAQKY
QDKLSEIFKSINVTVTPKADSKFPIVSAASICAKVARDQCLEGWKFGEGE
FPTEYGCGYTSDSLTQKWLKDVIDPVFGHPQFVRFGWSTCSEMLKKHARD
VTWEDDDDEGKPKKKKSSFAITSFYTQEKNNQKVDHCRFFKERNLQQVSS
L
Run BLAST on NCBI

transcript from alignment at scaffold_348:87422..101394+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060627 ID=TCONS_00060627|Name=TCONS_00060627|organism=Clytia hemisphaerica|type=transcript|length=13973bp|location=Sequence derived from alignment at scaffold_348:87422..101394+ (Clytia hemisphaerica)
gttttttttcaccaTTCCTTGTTTGTCTGACATCTCCTACCTTCTTTGTG
AAGTGAAGTTCTgaaggtattttatttatttattttcaactgacaTAGGC
TTATTTTACTCTTAGTGTCTCTTTTTGCACCTCCAAATAATCTGGCTGTG
CCAAAACACTTAATTGTGCTGGCGGccttaaaacttttttctttgtgttA
GCTTTATTTATTAGCCCGATTAGCTAATCGataggtccaaaatgcataaa
acataatgtaTATTGCATAATACATAATGCATAATAAGGGGGAGggaggc
tataataaggagaatttgaaagataatactttcaacaaaacaaatatacc
attttctaccagaaaataaagNCCGCAATGATTGTGATATTGACAAATCG
TCTCCGCTTCATTTGATCCGTTTTtcctgaataaaaagaaagtaaaaaca
ttatttgaactTGAACTTTCAAAGTGTTGAAATCAACGGATTGTCAGTCG
CTTTTGGTNctataataaggagaatttgaaagataatactttcaacaaaa
caaatataccattttctaccagaaaataaagggtagaaagctgtaaattt
aaattttggatgatgaaaaaaatccatgatctaacattctgataaataac
gagattgctcacgggaatttctaaCCTACTTTCAACAttaacaaatatac
cattttctaccagaaaataaagggtagaaagctgtaaatttaaattttgg
atgatgaaaaaaatccatgatccaacattctgataaatAAACGAGATTGC
TCACAGGAATTTCTAACCTGCGCGAGCAAACccgcacctgtcaatcattt
tttagacctgtcaatcattttttagctccATATTCAGTTAGTTTCGCTTT
tattttcacttgtggttctgaaaaaagtgtttgNtgtaaagaaaaaatga
aagcctCGTTCATCTTCATTCCCCCCGTTTTcactttaaagttgaaattg
gCGTATTTGCCTGACACGTTCTAGCTAATTTGCACAGGGTCAGGAAAACC
CCTTggggtatgtgccacccttaaaGGTACCTTTTTTGGGTAAAGTCCCG
GTAAAGGTCggaaaattcccaaaattttcctttNcatagaatgaacttcc
ttttataggatgaaccatattcatgtggctttcagccttgcactccatcg
cagaggctaatcaattttaatgacttgttttactaatgaccaagttaaaa
ttttttaatttttttatatttgagtattaaaaaggcatgcattcaaataa
taaaggtttaaaatttttctctgggctagttagtaaaatatctcaaatag
gctctgtgatggagtgcaaggctgaaagccacaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccacatgaatatg
gttaatcctataaaaggaagttcattctatggtggcctatcttgaagtga
aggtggttgaacaaaatgtttttggcatattgatggaactggcaagataa
taaaaaaagacgaaagttgttttttttgcatttattttagttgaaagttt
tggaatactggattttcaagagaagggcAAGTTCTTGACTCTTGACAGCT
TGACTCTCCACCCACCCACTAAccaacctgatccattttgaaatactgta
tatacttgagtcaaactgcactgaggtgacactaagaaaatttttgtttc
ttaaaattataaagagaattttttttgaaatatcaataaaagagctcata
ataccagaaaaagtttggtcaaaatgctgacaaaataacacaaacttcaa
cgcaccgtataggattcgaactctcaAAATTGACATTCTTATTCTTGCCA
GTTCACCGCTTTATCCACTCGGCCACTAGAGATGATGATTTGAAGAAAAC
AATAATTAATAATACCATAATTTTATTTGCCTTGACCTGcataattttat
ttaccctgtcaaggtattaacttcttaaacaaatgattttagatcaTTTA
AAACATGGGGGAGCCGATCACTCATCGAGATTTTTAGGGCTCTTTAGTTG
AAGAGTGACTTTTCTTGACTTATTCAATTCTGTAAGGGGACTGCAGCAAA
AGGGCTGTAAACCCTACTAGTGCCTATGAAATAAGAATTTCCATCTGGGG
GGTTAGGACACTCTCCAATCTCCTTAAAGTCTCAAAAGACTGAAAAGAGA
AGCTTTTTCTTGCATACAGTACCCATATACAGCAGACAGAATTCACAGAG
CGTACACGCGCGGGCGTTTAAACAAGATCGCGCGGAATGCGGGtcaaaaa
aattcccgtgagcaatctcgttatttatcaaaaagtctcACATCTCtaat
ctaccatttttgttttgattcaactttgtattttaatgaccagccaggtc
acactcatttgagggctatgcatgttaacctccactgatgcaagttactc
gataaaaaaaaaaaaattcctacaGTGTAATCTTTTCAaacttcagattt
ttttcaaaatttctttcaatgtTTCATCTGAGAATATATTTGAAGATCTA
AGGAGTTTCTGGTATGAGAAATGAATTATTGTGAATGCGCTGCTAAAatg
aaatgataaaagaaaatgtgtttttatattttgattttttgatccACAAT
CTTTGGCTATTTATGTTTGATTTATTGAAGATTTAAAATTTCCATTCTAC
CATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTG
TGACTATAAtacttcatactctttcttgttgataattttgctggtaggtg
ggaaagcgagtttccttcgaaacggattttctgttaaaaaaaaggggggg
aagatttcattacaaaagggggggatgggtatatagggggggatgaaaaa
TTCCCGTGAgtaatctcgttatttatcaaaaagtcactggaaatgcttgt
cgccattttgatttgcatagttgtattttacagaacatagtatagtgtag
aaaaacacgaaaatatctcctccgtatattacttttctaactcgaaaacg
taaattttatagcaagatctttattctgggttttctcagagatcttctcg
aacaattgctaataaatttcaacgggttttccctcttacaaagcatCAAC
CATGTGAAtactttttgttagataagccaatatccagccaatataaatat
taaagagcttcatgcgaaagctagatcaaagaaaatcgacttcgaatctt
tttacattcgaatgtttatgtgtttaccttttttgagAAGGAAGAAAGGg
aaacctaggcttttaggccttactcttggtctataggcactgttATGGGC
gaccactagtgacccccactgGGAATTCGCTTTTGATTAAACATAATaga
aattataaacaaaaagattttatcaatagagatttcaaataaaagaatgt
ttataaagcacagctgattggcttaggtttcgaaactctctattgcttca
ttaaaacctcagtccgcatgcgatttatccagagaatttcaatattcaaa
acaagagcagtgctcatatcccgaagagtaggagttttacgctcggagga
agatatgacgtagcctaagggaaacctttctgatctgttgcatcttctta
ttatttatgctgacggaaaaccctttgttgttatgattcgaatgtatTCT
CTTTCGTTCGAATTCGAAACTtagtaaatatcatgtctggggaaatccct
acTACTGTAATGTCTActaagaaactcttctaaagaggttttcgcggttt
tagcctctacaaaggagagtttttggtttttggtgtttgtgtgATTGCTG
TATTTGTgtttctgcttggctttttaaactttatgtctattggtttgttg
gttctttttcgcataaaattcttatttcttgacagaatgtttgattggtt
tgatttatatatttaaaaaaattcaaaaaaatggaaaaaacgtatcatta
taaaaatattagtccctttttatgtttcatctttattttatttagtattt
tcaacacttgctctccttgaggtcaaatctctgatcttcaccatatatac
aTACCAATCACTTTGCTCAAGCcaggaaaaaaataaaccaCCCTCccttt
gtataagattcccatttccgcactaagattcttgtcacttttctgGAGTC
TTTCCGCTACTTTTCCGGGGATAACTGGACTGGCATGAaattggaaaggg
tttgtttctaaaggtacCGAAAATCTTGGGTTCCTTTGTATAAGATTCca
atttccgcactaagattcttgtcacttttctggagtctttccgctatttt
tctGGGGATAACTGGACTGGCATGAaattggaaagggtttgtttctaaag
gtaTCGAAAATCTTGGGTTTACTTTAATCAAGAAACTGTCTAACTGGTTT
CCGGAGCTTACCTTAAGGGAAATTATTttggcaggaactaattttggcgg
gcagaaaaaatcctaaaagaaattaattttggtgggaacttattttgtCG
AATggcgaaattttttaaattttgacaggaactaattttggcgaatgaca
gcgtaaatgtgttctattttgccttattttgatgaatttcagggttcatt
tagtaaaaaataaataaaaaattttggtgggaacttattttggcaagtga
gcaaaatatttaattttggcgggaactaattttggcgaatttcgtctaaa
ttcggCAAATCggctaaaattagttcccgtcaaaattagttcccttaagg
tattttatttttcaacaaactgaagtcctggtctttttgCGGAATGTGCG
TTTGAGCGCGCGCAGCGCGCTCAAACGCGCGttccgcatcctttggcaag
atctgcgtacgcgggacgtaaatttgtatatgttcaaaaaaatgtcccca
aaactgctacctccaaaatgaaaaatatcaactttgctCTGAATTGAAGA
ATGGTACCTGTTTAGCTAGcgaaaagaagcatttacctcgtaaattttat
tgacaattaaattTAGTAAAACTTTGCTTCTgattttgtcgttttttgtt
tttaatatgcattcttttgaaaaaagtaaaagtggtactaaaattatatc
gagtttgactatccaatcaagtgcgagatgtctgtttttgtgtcgttgct
gctactttcacttttgcacacttgcgaaaaataaacaaagatggcgattt
ttgtcaagCTGTCAAGGCAGAggatcctgctgattttttaagctggaagg
catcttttgcttgtaaaatgacgttgctgctgttcacacttattggaaat
tttaaacgagtatcattcttgaagtttttttaccacttcctctgggagag
gtGAAAGCTGTCCTATCCTCCACTTGCTGATGGTGGTGGCTGTAGTCAAC
TGCTGAAATTTTCCATAAATNATTCTTGAGGTTTTTTaaccacttcctct
gggagaggtGAGAGCTGTCCTATCCTCCACTTGCTGATGGTGGTGGCTGT
CATGCGTCAACtgctgaaattttgtgaaatggTGTGATGATGGTTGTTTA
CTTTGTGGCATTCAAACTTCATGGCACATTTTTGTGAtaattgattggag
taaccattACTATTACATCAATTAATCTCATGGAAAACTATTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTATTGGAATTATGTCATGGTTAAACTT
AACATTCAGCGGGTATTGTTgccaaacaatgattttttttgtcacaTTGT
CAGCCAATACTGTTCGACTATTCAAGTAACTTTTACGAAAAAGATCATAC
GCCATCGAATATTGAGTGATTGTGGTCAGTAACATTCGTTGAGGCTGATT
GAGGAGGTACGCTGCTGTGAagaacagacaaaatatttgcaGGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTGGCATTATTGTTATGACTCGCTAATATATTCTA
GGTGAAATGTAAGGTcttattagtttgttctttaaaTTCTGCATATTAAT
AATGGAGTCGATTTCttgtacattttgagatttcttcgctttgcgaaaac
agaacgctcgttccgcaaccccttttatgttgatttcattttttgctTGT
TACTTTGAACCCATAAcagattacacacttttcctgtatcctgcCTTTCA
ACGCCAGAGGCAGTCTTGTTGGAGCGTAgtaccgtgaagttgggtaactt
gcaccagtggagggaaacttgcatagccatcaaatgactgaccaatcaaa
gcagcaaaatttcaaaacaaatgaactatacgcagctctgctcgcagctc
tactctaccatttttgttttgaattaactttgtattttaatgtcCAGCCA
AGTCATTCAtttaagggctatgcatgttagcctccgcTGATGCAAATTAC
CTGATCTCACAGTATTCTGCCATGAGGTCGTGGGCATAATGGCAACAGAG
TCGAGCTACAGACTTTATTCTGGATAGACAAATATCTGGTACAATAAATC
CTAACTAAGTCCAGGAACTGTCAAAATGGCTATTGCGTGCCGcaataaag
tttttgcaagtgAGGGAAGTTATGAGGATTATCATCGGACTAATCGATCT
TTTTAATGAccaaaccaatcaaacttctattgcttcaaaaattgtgagtg
ttcaattagattcgattaatttttttactcaAACTTTAAGTGTTCGATGG
AGTTCATTTAGTTCAATTGTTGGATTGGTTCCACAAGTTCAATTATTTTG
GACTGAGCTACTCTTCTTCataaacctaaaaatattttggttgacTCCCA
CAAATCTctgaaaacgagggctgggttacaaGGCCTCCTGCTGCAAAACC
CTTGACATAGTCTTGCAAAATTCTGTAATcaaaaccttccagatgttgaa
aattttccagaccttttaaattttttttggtcgtaaaaatcggattttct
tatttggggaaataatttccttatgtcatttttagcGGTTAGGGAAAAAG
CATTTCTCGCAATTggatttggtatttttttttcacttattttttttttg
catagtgatATAGAATTGTAATATCTAATttctgatggagcccgatttat
gaaaaaataattttttgggcaaatttgggccaaaaagtgcctaacatGGG
TATTTTTGGACTTCGGGAAAAATCACCTTTTATCATCAATTGGGAAATCa
cgctaaaatatttattcacccCAGTATCATACGAATTTAAACTCTACTTC
ACAGGTTGATATTAatttgagctgtgatactcacggtaatctattcaagc
tgctcactatacttttttactctcttgctatttgtcctatttttatctga
ttctcatcatcatgtaggtccattcagcatgttgcttgttttaatAAAGA
CGCCCTaatctttttacaattttcgaagaaaatttgTGTTAAATTGAAAT
ACTATGTAAAACACTTTGTAATGACTGATTTGTGTTAATTATTGACCTTT
CATAACAAAAAgcaaaataatgataaaattaataataacaaaataaattg
tcaCGTGCATTTTTCCTGGGTTAAATACTTGAGTAGTTATAAGTGTTGTA
AGGTATctaatttttcttggaaaatacaagaaactattttaggaaatttc
cttaaaaatacaggaaaatatttcaatatgatgaaaatttaatatacaag
aaaatattttgttcattttcctttgaaaatacgagAAAATGCATTTATAC
CTTTATAATATCTCAAAAATGACAGCGAGTGAAGtgagttttttttaatg
atgaAGAGCTGTCTTGGGCGACGGGACGGCTAGTTAGGTAGATTATGAGA
TaaagaatatattttataagatcTTTAATCTCTTTTTACTTCACGTTCAA
TTTTTTCAGAAtgaataattttagattttcttttgtttttggttgttagA
ATTATCAGCTGGATATTGGTTATGGACTATAGATCACTATATTTTTACAT
TTCAGTGATTTTTAGCCAAGATTGTTTTAGAAATGGACATCACAGAATAT
TTGGAGGAAAATGTAGAAACTCGTATTTTTCAATCACCTATCCCAGAAAG
TTGTAAAAACAGTCCTTGCTGTCTAGGGATAGATGAAGCTGGAAGAGGAC
CTGTTTTAGGTAAGAAAGTTTTTAatacactttttaatactgGCAGACAT
TGAAGATAAGGAAAGTAGAGTGATCTTGCTTTTACAGTTAAACAATTTAA
AatgtataataataatatcatTGTTATTTATACAAATAAACGAAAtataa
tttgattttgattattGTATGATATGATGTTATAGGCCCAATTAAGATCT
AATGAGCTTAGATAAAGAAAAGTATGAAAAGTTTTCAAAGTTCCTTTCAA
AATAATCTTTTGTCTTTAGGTCCGATGGTTTATGGCATTTGTTACTGTCC
AATATCTTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGGTtggtatt
tcaaattttaatgaaaaatgctcAGTTTGATACAATTCTTTCAATGTTAA
AAACTATATATGATAAACTGTACCgagtgcgccacaaaaaagtttctctc
tttaaaaagtttttttgtcgaaatctgaaaattttaaaagaaccatacCT
ATTCCGTTTGtgagaagaaagataaactcaaattttgatgggtcattatT
TGAATTTGGTTAATTAGATGTTCTATAATAtgctctattgaataaaaaaa
taactttctgaaagtggtcaaaaacgttaaaaatcgacctatcaaattaa
acagaagcataattacatgacgCATCATTATTTTCgtttcagccattaaa
aatgataattagctgccTAAATGACCTTTTATtttataaaggaaggttga
atttcaataaaaagaagaaaattcgtagaaaaaggccaaaaaatctggta
aaattcataaaactacatcaaatatgggtttcgaggaaCATCCATCATTA
CAAAgtctttatccagtctagaaccaaaaatataaggaaaataTGATTTC
GGTATAATTAAAttaagtgattttgatgaagattttaaacccttttgacc
catcagtttcaaaatttatgtatttaattattgaaaaatgcttttaatca
cgtaaaggctattgcgattgccaattttaaaataaaaatttgatagatcg
atttttaacgttttcgagcactttctgaaagtaaattttttgttcaattg
agcataacttttgatctaatgaatcgaatttgataaatgacccatcaaaa
tttaagtttatcttacTTCTTtgcaatgaaataggaatggttcttttaaa
atttttagattttgagaaaattagtttcaaagagagaaacttttttatgg
cgcacccggtagaaatGTATCAACTTTTAGTTTTAGAGTTGGAACTAATC
CCTTTTCATGAAATTTGAAAGAATTGTTAActttatgtttttaaaattta
cattGTCTTACTTTGACAGACtccaaaacattgaaaaaagaagacagaGA
TAAACTTTTATCAGTAATTGAGCAAAACATTGAAAACATTGGATGGGCTA
TCAAAATTATATCACCAACCTCACTATCAAATGATATGCTGAGAAGGTAT
ATTTTAGAACCTTTCTATAACATGCATTGCTTAGTTACTGTGAAATTCAT
GAGACTTTTCTGCTTTTCTAGGAGATATTTTGAGATGATTATGTATGATA
TTTACATTTTTGTTGAGTGTGACCAAGGCGTAAACACTTGCtggtcaaaa
taaaattaatgcTTCCTTTTTAGTATCAGCCTAACATAGAAACactaaat
ctttatttttgattttgtacctTCAGCACAAAAATCAGTTTGAATGAGAT
TTCACACAATGCAGCAATTGAATTGACCAAAGTTACAATTAAAGACGGAG
CTGACATCAAGGAGGTATGGAGCGGAGACATTGTTTTTAAACATCCCCTT
GGATTAAATCCCCTATGGTAAATGAGTCACATTGCTCTCTTTGTTCTCTA
TTTATTCAAGATAATTGGGATAATGATAAGATAGATATTTGTATAGTAAG
AGTCCTTGACCCTTAATGATTTACTATTTGTCCTGTTCAGAGGcaatttc
ccaaaatatttttttcatccgTANtatacaagaaaatatttttgttcagG
CTGGACTTTGAAATGTTGGTTTGCTGTAACCCTACGTGGAAACATGTTGA
CCAAAAAAATTTACTATAATTATATTTACAATAACTATTGTTATGTAATG
ttcagggtggaaatttttgaaagtgagactaatacagcagaatcagggca
aaaaaattcgaaattgaTTGATCAGCGGATCCCCCCCGGGGAATTATTGT
TAGGTAGTTATACTTAGGGGCTTATTAGGTGcccaaaagtaaaattaaaa
aatacatttaatgTCTCAAAAATGACAGCAGTAAAGGAAGCTTGATTATC
ATCGTAAAGAAGAGTCTTTTCGGACGACGAGGGCTAGTTTTGATTATgaa
tatttctatttctttatttcaaTAGATGTATGTTGACACAGTTGGCCCAG
CTCAAAAATATCAGGAcaaattatcagaaattttcaaatcaataaatGTT
ACTGTGACACCAAAAGCTGATTCCAAATTCCCAATTGTCAGTGCTGCTAG
TATTTGTGCTAAGGTATGATCAGCCCCAAACCAAACTAAATGATTATAAG
TCCacttttttacattttcgaCAAAGTTAAGATGATGCTAGTACTTGTAT
GATTAAGTTTAATATTTATATTTCTTTTCGAATTTAgtattttagacaaa
attcttgtgtacaaaaaattttaatgaacaaaatttttttttcaaaggtt
gCACGTGATCAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCCC
TACTGAATATGGGTGTGGTTATACATCAGGTAAATATTTAAATCATAATA
GCAGAAACTCTTTTATTAATGGCACTTGAATCAGATTTGCCCTCTTTAGA
GCAAAAATTGATAATGGCTTCTTGTAATAtgtatgaaaattttttatgtt
gGAAGGTATAAGTTCTTTGAATTTTCTCTTGATAGATTCACTGACACAAA
AATGGTTGAAAGACGTCATCGATCCTGTATTTGGACATCCACAATTTGTG
AGGTTTGGCTGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGA
CGTTACGTGGTATGATAATTTagtttaaaggaagaaattttggcaaaacg
AATTTGGCAGATTTAGCAGCAATCCTGCAAATTAAGTTctcacaaaagtt
ttttttttcagccatccatcaaatttgaatttgtttattCATTATCCCAG
GGCTTtaaacaggttttttgcttatttgatagtgtttttggtcaaaaata
aaattcatccgccaaattaaattcttacCAAAATTTCTCCCTTTAAGGTA
GTTGTATTCTTATCAATAGACTACCATATTTCAGTTTTACTTATTTCTTA
AGTTCAACAAATCTTATATAGTTGAAAGaccattttttgtcattattgaC
AAATTTAAACCATCAGTATAGAAAGTGGCAAATACCCagtgtttgttttg
aaaagagaactTCATGATATGAATTTTTGCTATTAATATAGTATTTCACA
AATTATTGTGTTCTTAGATTTAAACAATTaatctaaaaaaattattttct
ctctCTTAGGGAGGATGATGACGATGAGGGAAAacctaaaaagaagaaaa
gttccTTTGCCATCACGTCATTCTACACTCAAgagaaaaacaaccaaaaa
gtTGACCACTGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTC
TTTATGAtaagaaattttcaactttgCAGTCAATCATTTGAGTGAACTGT
TCGATTATTTAACTGTATCGTACAGTTTTTACGCACACACTCAAGGTGAA
CAATAAGGAAATGTATTTCTTTTCGGACCATGAACCTTTACAATCATCAC
TGTGTACATGATATTAAAAGAAAGGAgtaataaatgaataaatgatTTAC
AAAATAATTTGACATTGTATTGGACATTTTGTTTCTCAACTTACTACTGC
ACATGggatcatagtcattataaaaaactcgctctggcaatgtattgttt
tagctttttgtttaattttcttttgttacaaacaaaaggcaagttgcgat
ttgaatactttttgatcacattaccaaaatctcctcttgggattggtcta
ttttctaatcacatgatcaaaaagctTGCAAAATAAATCTATTTTGGTAC
ATAAGCTCTatctttttacaataaaaagagaaaaaagccTTCcactgttt
ttataatgactatgatggGATGATGCCAATAAAGAAAATACTGTTTTTAT
GGATATTAGTAAAATTAATTAACATAAACCTGACTTACCATATTGGTTGC
AATCCAAATGCACCATTACAAATATCTGTGATATGGGTTTATTTCaagat
tgttttgtttatttataacgctgaaatatataaaaattgaaagattttta
tgcTATTATTTGTTGagcattattttttttcatttctttatgtTAAAATA
AATACTTCAATGAATCAATCAAA

Coding sequence (CDS) from alignment at scaffold_348:87422..101394+

>TCONS_00060627 ID=TCONS_00060627|Name=TCONS_00060627|organism=Clytia hemisphaerica|type=CDS|length=7248bp|location=Sequence derived from alignment at scaffold_348:87422..101394+ (Clytia hemisphaerica)
ATGGACATCACAGAATATTTGGAGGAAAATGTAGAAACTCGTATTTTTCA
ATCACCTATCCCAGAAAGTTGTAAAAACAGTCCTTGCTGTCTAGGGATAG
ATGAAGCTGGAAGAGGACCTGTTTTAGGTCCGATGGTTTATGGCATTTGT
TACTGTCCAATATCTTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGA
CtccaaaacattgaaaaaagaagacagaGATAAACTTTTATCAGTAATTG
AGCAAAACATTGAAAACATTGGATGGGCTATCAAAATTATATCACCAACC
TCACTATCAAATGATATGCTGAGAAGCACAAAAATCAGTTTGAATGAGAT
TTCACACAATGCAGCAATTGAATTGACCAAAGTTACAATTAAAGACGGAG
CTGACATCAAGGAGATGTATGTTGACACAGTTGGCCCAGCTCAAAAATAT
CAGGAcaaattatcagaaattttcaaatcaataaatGTTACTGTGACACC
AAAAGCTGATTCCAAATTCCCAATTGTCAGTGCTGCTAGTATTTGTGCTA
AGgttgCACGTGATCAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAA
TTCCCTACTGAATATGGGTGTGGTTATACATCAGATTCACTGACACAAAA
ATGGTTGAAAGACGTCATCGATCCTGTATTTGGACATCCACAATTTGTGA
GGTTTGGCTGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGAC
GTTACGTGGGAGGATGATGACGATGAGGGAAAacctaaaaagaagaaaag
ttccTTTGCCATCACGTCATTCTACACTCAAgagaaaaacaaccaaaaag
tTGACCACTGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTCT
TTATGAATGGACATCACAGAATATTTGGAGGAAAATGTAGAAACTCGTAT
TTTTCAATCACCTATCCCAGAAAGTTGTAAAAACAGTCCTTGCTGTCTAG
GGATAGATGAAGCTGGAAGAGGACCTGTTTTAGGTCCGATGGTTTATGGC
ATTTGTTACTGTCCAATATCTTTTATGGAAGAATTGAAAGAACTAGGATT
CGCGGACtccaaaacattgaaaaaagaagacagaGATAAACTTTTATCAG
TAATTGAGCAAAACATTGAAAACATTGGATGGGCTATCAAAATTATATCA
CCAACCTCACTATCAAATGATATGCTGAGAAGCACAAAAATCAGTTTGAA
TGAGATTTCACACAATGCAGCAATTGAATTGACCAAAGTTACAATTAAAG
ACGGAGCTGACATCAAGGAGATGTATGTTGACACAGTTGGCCCAGCTCAA
AAATATCAGGAcaaattatcagaaattttcaaatcaataaatGTTACTGT
GACACCAAAAGCTGATTCCAAATTCCCAATTGTCAGTGCTGCTAGTATTT
GTGCTAAGgttgCACGTGATCAATGTTTAGAAGGGTGGAAATTTGGTGAA
GGGGAATTCCCTACTGAATATGGGTGTGGTTATACATCAGATTCACTGAC
ACAAAAATGGTTGAAAGACGTCATCGATCCTGTATTTGGACATCCACAAT
TTGTGAGGTTTGGCTGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCC
CGAGACGTTACGTGGGAGGATGATGACGATGAGGGAAAacctaaaaagaa
gaaaagttccTTTGCCATCACGTCATTCTACACTCAAgagaaaaacaacc
aaaaagtTGACCACTGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTC
TCCTCTTTATGAATGGACATCACAGAATATTTGGAGGAAAATGTAGAAAC
TCGTATTTTTCAATCACCTATCCCAGAAAGTTGTAAAAACAGTCCTTGCT
GTCTAGGGATAGATGAAGCTGGAAGAGGACCTGTTTTAGGTCCGATGGTT
TATGGCATTTGTTACTGTCCAATATCTTTTATGGAAGAATTGAAAGAACT
AGGATTCGCGGACtccaaaacattgaaaaaagaagacagaGATAAACTTT
TATCAGTAATTGAGCAAAACATTGAAAACATTGGATGGGCTATCAAAATT
ATATCACCAACCTCACTATCAAATGATATGCTGAGAAGCACAAAAATCAG
TTTGAATGAGATTTCACACAATGCAGCAATTGAATTGACCAAAGTTACAA
TTAAAGACGGAGCTGACATCAAGGAGATGTATGTTGACACAGTTGGCCCA
GCTCAAAAATATCAGGAcaaattatcagaaattttcaaatcaataaatGT
TACTGTGACACCAAAAGCTGATTCCAAATTCCCAATTGTCAGTGCTGCTA
GTATTTGTGCTAAGgttgCACGTGATCAATGTTTAGAAGGGTGGAAATTT
GGTGAAGGGGAATTCCCTACTGAATATGGGTGTGGTTATACATCAGATTC
ACTGACACAAAAATGGTTGAAAGACGTCATCGATCCTGTATTTGGACATC
CACAATTTGTGAGGTTTGGCTGGTCAACCTGTAGCGAGATGTTAAAAAAA
CATGCCCGAGACGTTACGTGGGAGGATGATGACGATGAGGGAAAacctaa
aaagaagaaaagttccTTTGCCATCACGTCATTCTACACTCAAgagaaaa
acaaccaaaaagtTGACCACTGTCGATTCTTCAAAGAACGAAACCTTCAA
CAAGTCTCCTCTTTATGAATGGACATCACAGAATATTTGGAGGAAAATGT
AGAAACTCGTATTTTTCAATCACCTATCCCAGAAAGTTGTAAAAACAGTC
CTTGCTGTCTAGGGATAGATGAAGCTGGAAGAGGACCTGTTTTAGGTCCG
ATGGTTTATGGCATTTGTTACTGTCCAATATCTTTTATGGAAGAATTGAA
AGAACTAGGATTCGCGGACtccaaaacattgaaaaaagaagacagaGATA
AACTTTTATCAGTAATTGAGCAAAACATTGAAAACATTGGATGGGCTATC
AAAATTATATCACCAACCTCACTATCAAATGATATGCTGAGAAGCACAAA
AATCAGTTTGAATGAGATTTCACACAATGCAGCAATTGAATTGACCAAAG
TTACAATTAAAGACGGAGCTGACATCAAGGAGATGTATGTTGACACAGTT
GGCCCAGCTCAAAAATATCAGGAcaaattatcagaaattttcaaatcaat
aaatGTTACTGTGACACCAAAAGCTGATTCCAAATTCCCAATTGTCAGTG
CTGCTAGTATTTGTGCTAAGgttgCACGTGATCAATGTTTAGAAGGGTGG
AAATTTGGTGAAGGGGAATTCCCTACTGAATATGGGTGTGGTTATACATC
AGATTCACTGACACAAAAATGGTTGAAAGACGTCATCGATCCTGTATTTG
GACATCCACAATTTGTGAGGTTTGGCTGGTCAACCTGTAGCGAGATGTTA
AAAAAACATGCCCGAGACGTTACGTGGGAGGATGATGACGATGAGGGAAA
acctaaaaagaagaaaagttccTTTGCCATCACGTCATTCTACACTCAAg
agaaaaacaaccaaaaagtTGACCACTGTCGATTCTTCAAAGAACGAAAC
CTTCAACAAGTCTCCTCTTTATGAATGGACATCACAGAATATTTGGAGGA
AAATGTAGAAACTCGTATTTTTCAATCACCTATCCCAGAAAGTTGTAAAA
ACAGTCCTTGCTGTCTAGGGATAGATGAAGCTGGAAGAGGACCTGTTTTA
GGTCCGATGGTTTATGGCATTTGTTACTGTCCAATATCTTTTATGGAAGA
ATTGAAAGAACTAGGATTCGCGGACtccaaaacattgaaaaaagaagaca
gaGATAAACTTTTATCAGTAATTGAGCAAAACATTGAAAACATTGGATGG
GCTATCAAAATTATATCACCAACCTCACTATCAAATGATATGCTGAGAAG
CACAAAAATCAGTTTGAATGAGATTTCACACAATGCAGCAATTGAATTGA
CCAAAGTTACAATTAAAGACGGAGCTGACATCAAGGAGATGTATGTTGAC
ACAGTTGGCCCAGCTCAAAAATATCAGGAcaaattatcagaaattttcaa
atcaataaatGTTACTGTGACACCAAAAGCTGATTCCAAATTCCCAATTG
TCAGTGCTGCTAGTATTTGTGCTAAGgttgCACGTGATCAATGTTTAGAA
GGGTGGAAATTTGGTGAAGGGGAATTCCCTACTGAATATGGGTGTGGTTA
TACATCAGATTCACTGACACAAAAATGGTTGAAAGACGTCATCGATCCTG
TATTTGGACATCCACAATTTGTGAGGTTTGGCTGGTCAACCTGTAGCGAG
ATGTTAAAAAAACATGCCCGAGACGTTACGTGGGAGGATGATGACGATGA
GGGAAAacctaaaaagaagaaaagttccTTTGCCATCACGTCATTCTACA
CTCAAgagaaaaacaaccaaaaagtTGACCACTGTCGATTCTTCAAAGAA
CGAAACCTTCAACAAGTCTCCTCTTTATGAATGGACATCACAGAATATTT
GGAGGAAAATGTAGAAACTCGTATTTTTCAATCACCTATCCCAGAAAGTT
GTAAAAACAGTCCTTGCTGTCTAGGGATAGATGAAGCTGGAAGAGGACCT
GTTTTAGGTCCGATGGTTTATGGCATTTGTTACTGTCCAATATCTTTTAT
GGAAGAATTGAAAGAACTAGGATTCGCGGACtccaaaacattgaaaaaag
aagacagaGATAAACTTTTATCAGTAATTGAGCAAAACATTGAAAACATT
GGATGGGCTATCAAAATTATATCACCAACCTCACTATCAAATGATATGCT
GAGAAGCACAAAAATCAGTTTGAATGAGATTTCACACAATGCAGCAATTG
AATTGACCAAAGTTACAATTAAAGACGGAGCTGACATCAAGGAGATGTAT
GTTGACACAGTTGGCCCAGCTCAAAAATATCAGGAcaaattatcagaaat
tttcaaatcaataaatGTTACTGTGACACCAAAAGCTGATTCCAAATTCC
CAATTGTCAGTGCTGCTAGTATTTGTGCTAAGgttgCACGTGATCAATGT
TTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCCCTACTGAATATGGGTG
TGGTTATACATCAGATTCACTGACACAAAAATGGTTGAAAGACGTCATCG
ATCCTGTATTTGGACATCCACAATTTGTGAGGTTTGGCTGGTCAACCTGT
AGCGAGATGTTAAAAAAACATGCCCGAGACGTTACGTGGGAGGATGATGA
CGATGAGGGAAAacctaaaaagaagaaaagttccTTTGCCATCACGTCAT
TCTACACTCAAgagaaaaacaaccaaaaagtTGACCACTGTCGATTCTTC
AAAGAACGAAACCTTCAACAAGTCTCCTCTTTATGAATGGACATCACAGA
ATATTTGGAGGAAAATGTAGAAACTCGTATTTTTCAATCACCTATCCCAG
AAAGTTGTAAAAACAGTCCTTGCTGTCTAGGGATAGATGAAGCTGGAAGA
GGACCTGTTTTAGGTCCGATGGTTTATGGCATTTGTTACTGTCCAATATC
TTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGACtccaaaacattga
aaaaagaagacagaGATAAACTTTTATCAGTAATTGAGCAAAACATTGAA
AACATTGGATGGGCTATCAAAATTATATCACCAACCTCACTATCAAATGA
TATGCTGAGAAGCACAAAAATCAGTTTGAATGAGATTTCACACAATGCAG
CAATTGAATTGACCAAAGTTACAATTAAAGACGGAGCTGACATCAAGGAG
ATGTATGTTGACACAGTTGGCCCAGCTCAAAAATATCAGGAcaaattatc
agaaattttcaaatcaataaatGTTACTGTGACACCAAAAGCTGATTCCA
AATTCCCAATTGTCAGTGCTGCTAGTATTTGTGCTAAGgttgCACGTGAT
CAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCCCTACTGAATA
TGGGTGTGGTTATACATCAGATTCACTGACACAAAAATGGTTGAAAGACG
TCATCGATCCTGTATTTGGACATCCACAATTTGTGAGGTTTGGCTGGTCA
ACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGACGTTACGTGGGAGGA
TGATGACGATGAGGGAAAacctaaaaagaagaaaagttccTTTGCCATCA
CGTCATTCTACACTCAAgagaaaaacaaccaaaaagtTGACCACTGTCGA
TTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTCTTTATGAATGGACAT
CACAGAATATTTGGAGGAAAATGTAGAAACTCGTATTTTTCAATCACCTA
TCCCAGAAAGTTGTAAAAACAGTCCTTGCTGTCTAGGGATAGATGAAGCT
GGAAGAGGACCTGTTTTAGGTCCGATGGTTTATGGCATTTGTTACTGTCC
AATATCTTTTATGGAAGAATTGAAAGAACTAGGATTCGCGGACtccaaaa
cattgaaaaaagaagacagaGATAAACTTTTATCAGTAATTGAGCAAAAC
ATTGAAAACATTGGATGGGCTATCAAAATTATATCACCAACCTCACTATC
AAATGATATGCTGAGAAGCACAAAAATCAGTTTGAATGAGATTTCACACA
ATGCAGCAATTGAATTGACCAAAGTTACAATTAAAGACGGAGCTGACATC
AAGGAGATGTATGTTGACACAGTTGGCCCAGCTCAAAAATATCAGGAcaa
attatcagaaattttcaaatcaataaatGTTACTGTGACACCAAAAGCTG
ATTCCAAATTCCCAATTGTCAGTGCTGCTAGTATTTGTGCTAAGgttgCA
CGTGATCAATGTTTAGAAGGGTGGAAATTTGGTGAAGGGGAATTCCCTAC
TGAATATGGGTGTGGTTATACATCAGATTCACTGACACAAAAATGGTTGA
AAGACGTCATCGATCCTGTATTTGGACATCCACAATTTGTGAGGTTTGGC
TGGTCAACCTGTAGCGAGATGTTAAAAAAACATGCCCGAGACGTTACGTG
GGAGGATGATGACGATGAGGGAAAacctaaaaagaagaaaagttccTTTG
CCATCACGTCATTCTACACTCAAgagaaaaacaaccaaaaagtTGACCAC
TGTCGATTCTTCAAAGAACGAAACCTTCAACAAGTCTCCTCTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038133XLOC_038133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060627-exon-scaffold_348-1491911889:87422..87487TCONS_00060627-exon-scaffold_348-1491911889:87422..87487Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:87422..87487TCONS_00060627-exon-scaffold_348-1510915933:87422..87487Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:87422..87487TCONS_00060627-exon-scaffold_348-1575043694:87422..87487Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:96727..96880TCONS_00060627-exon-scaffold_348-1491911889:96727..96880Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:96727..96880TCONS_00060627-exon-scaffold_348-1510915933:96727..96880Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:96727..96880TCONS_00060627-exon-scaffold_348-1575043694:96727..96880Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:97141..97212TCONS_00060627-exon-scaffold_348-1491911889:97141..97212Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:97141..97212TCONS_00060627-exon-scaffold_348-1510915933:97141..97212Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:97141..97212TCONS_00060627-exon-scaffold_348-1575043694:97141..97212Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:98241..98367TCONS_00060627-exon-scaffold_348-1491911889:98241..98367Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:98241..98367TCONS_00060627-exon-scaffold_348-1510915933:98241..98367Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:98241..98367TCONS_00060627-exon-scaffold_348-1575043694:98241..98367Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:98598..98685TCONS_00060627-exon-scaffold_348-1491911889:98598..98685Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:98598..98685TCONS_00060627-exon-scaffold_348-1510915933:98598..98685Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:98598..98685TCONS_00060627-exon-scaffold_348-1575043694:98598..98685Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:99297..99434TCONS_00060627-exon-scaffold_348-1491911889:99297..99434Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:99297..99434TCONS_00060627-exon-scaffold_348-1510915933:99297..99434Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:99297..99434TCONS_00060627-exon-scaffold_348-1575043694:99297..99434Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:99619..99700TCONS_00060627-exon-scaffold_348-1491911889:99619..99700Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:99619..99700TCONS_00060627-exon-scaffold_348-1510915933:99619..99700Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:99619..99700TCONS_00060627-exon-scaffold_348-1575043694:99619..99700Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:99857..99980TCONS_00060627-exon-scaffold_348-1491911889:99857..99980Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:99857..99980TCONS_00060627-exon-scaffold_348-1510915933:99857..99980Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:99857..99980TCONS_00060627-exon-scaffold_348-1575043694:99857..99980Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1491911889:100481..101394TCONS_00060627-exon-scaffold_348-1491911889:100481..101394Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1510915933:100481..101394TCONS_00060627-exon-scaffold_348-1510915933:100481..101394Clytia hemisphaericaexon
TCONS_00060627-exon-scaffold_348-1575043694:100481..101394TCONS_00060627-exon-scaffold_348-1575043694:100481..101394Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060627-proteinTCONS_00060627-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_348supercontigscaffold_348:87422..101394 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.5003	42.3479	41.6922	41.1478	3.57992	3.63911	9.41419	9.63461	13.8612	11.2789	10.5606	9.89812	15.1848	12.6307	13.5518	15.9874	24.2112	21.1238	10.7062	14.7457	17.5225	22.7877	29.4511	28.6457	9.85762	4.91706	13.6661	10.7372	18.8294	16.1511
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004649RNase_H2_suA
IPR023160RNase_HII_hlx-loop-hlx_cap_dom
IPR024567RNase_HII/HIII_dom
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016070 RNA metabolic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Blast
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BLAST of TCONS_00060627 vs. Swiss-Prot (Human)
Match: RNH2A (Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.054e-84
Identity = 135/304 (44.41%), Postives = 195/304 (64.14%), Query Frame = 1 
Query:   94 MDITEYLEENVETRIFQSPIPESCKNSPCCLGIDEAGRGPVLGPMVYGICYCPISFMEELKELGFADSKTLKKEDRDKLLSVIEQNIENIGWAIKIISPTSLSNDMLRSTKISLNEISHNAAIELTKVTIKDGADIKEMYVDTVGPAQKYQDKLSEIFKSINVTVTPKADSKFPIVSAASICAKVARDQCLEGWKFGEG--EFPTEYGCGYTSDSLTQKWLKDVIDPVFGHPQFVRFGWSTCSEMLKKHARDVTWXXXXXXXXXXXXXSSFAITSFYTQEKNNQKVDHC-RFFKERNLQQVSSL 996
            MD++E   +N       SP+P  C+  PC LG+DEAGRGPVLGPMVY ICYCP+  + +L+ L  ADSKTL + +R++L + +E + + +GWA+ ++SP  +S  ML   K +LN +SH+ A  L +  +  G ++ +++VDTVG  + YQ +L + F  I VTV  KAD+ +P+VSAASICAKVARDQ ++ W+F E   +  T+YG GY +D  T+ WLK+ ++PVFG PQFVRF W T   +L+K A DV WED   E +   +K    ITS++  E +  +     R+F ER L+  +SL
Sbjct:    1 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKME-DTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRK----ITSYFLNEGSQARPRSSHRYFLERGLESATSL 299
The following BLAST results are available for this feature:
BLAST of TCONS_00060627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNH2A2.054e-8444.41Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASE... [more]
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