Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061043 ID=TCONS_00061043|Name=TCONS_00061043|organism=Clytia hemisphaerica|type=transcript|length=1798bpRun BLAST on NCBI transcript from alignment at scaffold_354:279343..289034+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061043 ID=TCONS_00061043|Name=TCONS_00061043|organism=Clytia hemisphaerica|type=transcript|length=9692bp|location=Sequence derived from alignment at scaffold_354:279343..289034+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00061043 vs. Swiss-Prot (Human)
Match: XPP1 (Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3) HSP 1 Score: 320.087 bits (819), Expect = 6.621e-100 Identity = 154/286 (53.85%), Postives = 199/286 (69.58%), Query Frame = 3 Query: 813 IRDGGALCEYLCWLEKNF-NTNINEAEAAEKLDKLRSEQDKFVSLSFETISSIGPNCAVIHYKPEMETAKVLSTD-MYLCDSGGQYLDGTTDVTRTIHLGTPTDHQKETYTRVLKGHIQLARAVFPKGTRGHILDVLARAPLWEIGLEYAHGTGHGVGAFLNVHEGPIGISPKNSEDPPLESGMFLSDEPGYYEDGSFGIRIENIIQVVEKKLKHNYGNRGYLGFEVVTMAPLYKELIVPQLLSTEEVDWINDYHTEVFEKVGSYLRDNNKANVVDWLKNATSPLG 1664 I+D ALCE WLEK + E AA+K ++ R +Q FV LSF TISS GPN A+IHY P ET + LS D +YL DSG QY DGTTDVTRT+H GTPT ++KE +T VLKGHI ++ AVFP GT+GH+LD AR+ LW+ GL+Y HGTGHGVG+FLNVHEGP GIS K D PLE+GM ++DEPGYYEDG+FGIRIEN++ VV K K+N+ NRG L FE +T+ P+ ++I L+ +E DW+N+YH + +G L+ + ++WL T P+ Sbjct: 335 IKDAVALCELFNWLEKEVPKGGVTEISAADKAEEFRRQQADFVDLSFPTISSTGPNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGTPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTFEPLTLVPIQTKMIDVDSLTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQPIS 620 The following BLAST results are available for this feature:
BLAST of TCONS_00061043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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