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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061390 ID=TCONS_00061390|Name=TCONS_00061390|organism=Clytia hemisphaerica|type=transcript|length=1144bp
GGCAATTTAACAGTATGATGTTTTGAGGTATGAATATTAGTTTAgaacat
tttcgaaaaagtctatGACCCACATTGAGATTTTATTGACTCAAAAGTAG
AGCAAGAACATCTTACAGTCTTACGGTATTACAGACTGACGACATAGCAA
GAACAGAAGAAGAAAATATCATAAAAGCTAAATTGAAAGAACGTCACAAT
GATTGCAGACTTTATAATATGTTGTACACTATTGATTAATGCTGGTGCAA
TTCTCAATTTTAAGTTaaagaagaaaagtgGAGAAACCTTTGGTGAAGAG
GAGCCCAGTGCTAaagAAAAGGTGATCGAATTCTTATTGAATTTACGATA
TTTTCGAATCTTCATCGGATTATGGAATATTGTTATCATTTTTCTAATGT
TTGTgTTCTTCTCTGGCTAATGACTGGATCAAAGCAAATATTGGTTAGAT
GAGACCTTCTGGAATAAGTCCAAAAAgggaaacaaacaaacaaatcaaGA
TTATGTACATAGTAACTATCTCTTTATATTTGGTATTCTCACTTATTTAT
TTTACATCAATCAGAGAAACATTTtagtaaatcttttttaaacagTCAAA
TTTTAGTTCTTCCGTCTCAATTAAGTATACAAACAAAAAggcttttccgt
ctcaaaattctgcataattcaccaatATTTCAAGAAGCTAATTTGCTAAA
TCCATGTTCTGTCTCAGACGAAAAACCTTGAGTTGGTCGGAGGCGAACCG
AATAGGAataggctcctctttcgatactGTAGCTATCTACTGAAGGTAGG
GGATGGTGCCACTTTTCCTCCAATATTCAAAATCAAAGATGTTTTTCAGA
TCATTATCTTCTGTCCCGACTCCCTACGAAAGGGAATAAGTTTCTAGTgg
actgttgtcatttatgcgGCATCTTTAAACTAGGATTTTTTTGTATTCTC
ACAGCCCCAGGTGGGATgaagatttttatgaaaattccaTTGGGGATAGA
AGTTCTATTGTTTCAACCTCAAAATATCCAATGGGGACGtttttggagtg
catttttCCCatggaatttcaaatggggatgaaatcaaagtcaatttccc
ataAGGGCTAAAACTGTGAGTGTATTTTTCCAACTGGAGATgag Run BLAST on NCBI transcript from alignment at scaffold_358:291137..299814+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061390 ID=TCONS_00061390|Name=TCONS_00061390|organism=Clytia hemisphaerica|type=transcript|length=8678bp|location=Sequence derived from alignment at scaffold_358:291137..299814+ (Clytia hemisphaerica)
GGCAATTTAACAGTATGATGTTTTGAGGTATGAATATTAGTTTAgaacat
tttcgaaaaagtctatGACCCACATTGAGATTTTATTGACTCAAAAGTAG
AGCAAGAACATCTTACAGTCTTACGGTATTACAGACTGACGACATAGCAA
GAACAGAAGAAGAAAATATCATAAAAGCTAAATTGAAAGAACGTCACAAT
GATTGCAGACTTTATAATATGTTGGTAAGAAAATAAAACTAAGATGTAGC
ATACTTTTTTGGTAATTATAATGTATCAGAGTTATTGATTTCAAAGGCCA
AAATAAAAAGTAGaaggttggcagacgatatcatactccaggatgcaagt
gaaatttttcaatccgcggacctagacgggggttcggttattatcagtta
gggttagggttggagctcgagagtcacaatataaggccgaaggccttctt
aggggcattcgtaccctgtgacttaacttacgatcccgtagggatccttg
taggggcaccggtagggttgggagctttcttaattaaggtctgtaaatta
cacgctataagtatttgtgaatgacggCCTTCTGGTGTGTCTCGTTGGCG
TAAGCAGTAAGGCATCGGGTTTGTAAACAAAGgatgcttgcatttggtgg
ttcgagccggggtcggagacctgtttcaccggtacgggcaaatttcagaa
aaatacttagaaaacagttagaaacacttgagaaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNacagttagaaacacttgagaaagacagaaaatcagg
atagaagataggaaagtagaaaatagggagaaaataagagacgatgcatc
ctggagtatgatatcgtggTCTATTGGCCAAAGCCCCAAGAAAATTATGC
CTTTTTGCAGAATTGAGTGCTATAATATCAAATATTTGAAgacatttttc
actcatttacCTTTTTCCATagctaattttatttttcataaagtttGAGT
TCCAAAACTCAATTAAAGATTCAGTTTCTGCTACCGTTATCCGAtaggtt
ggcagacgatatcatccaccaggatgcaagtgaaatttttcaatctgcgg
acctagacgggggttcggtattatcagttagggttagggttggagctcga
gagtcacaatataaggccgaaggccttcttaggggcatccgTACCCTGAG
ACctaacttaggatcccgtaggtctgtaaattacacgctataagtatttg
tgaatgacagctttCTGCCGTGTCTCGCTGGCACGAGCGGTTAGGCAtcg
ggtttgtaaaccaaggttgcttgcatttggtggtttgAGGCGGGTCGGAG
ACCCATttccaaatttcagaaaaatacttagaaaacagttagaaacactt
gagaaagtcagaaagtcaggatagaagataggaaagtagaaaatataggg
ggaaaataagagaggatgcatcctgtggatgatatcgtttgccaacctaT
CCGGTAGCAGAAAACCCCTGGAAATATGCCTGCTACcttgagattgggta
acttgtatcagtggaggcaaacatgcatagccctaaaatgaatgacctgt
ctggtcagggagggggtcagtgtaccagaaggtggcatgtatcctggggt
gggtgggtgtttgagaaaaaaatttgtcatgtaccacctgtgtactataa
ttggggtgttgggtccaaaatcgattttgatttttactacatgtgtacca
aaataggggtgttgggtccaaaatcgatgttaAAAGTATGAAAACAAAAA
GGTTCAGAAATtatctgctaaaatagaaatgtaaagttgttctattataa
attgatcaagccaagtttgtccaagatcattcttccaaacttcttggaat
gaattgaaatctgaccagatcccactgaaatgaaggtttatcgagtcaat
gtaaacattctaacattcaaattcgaacattcgaacatcagaggtgccaa
ctctcacacATGGGGTGTGAGACTCACgcatttccacatggtctcacgca
atttttgaaaagtttgatttctcacgcattttggatttttgagaaaaatt
ctcctgtttttacaatttttggaaaaaagttttcccgatttcccgatatc
CCGAGTTTCCGAAAAAAGTTTCCTCGATTTcccaatttttgtaaaaatgt
ttacccgattttccgattttttccaGGTAGTACCCAGTACGCAGTAGTAA
ATGGGGGTTTTGGgttggttttgtttttttttccaggtactacccggtag
taaataggcggtatggggtggttttgggatttttccatgtagtatggtgt
acttcaggggtgggtgtcaagttttgaaaaataccttgtagtacacatac
atgccgccttctagtacactgaccccccccctggtctggtcattaaaata
caactacgcagctctgctcgcggCTCTACTCtaccaattttgttttgatt
caactttgtattttaatgaccagccaagtctttcatttgagggctataca
TTTTAGCCTCCATTGAAGCAAGTTACCCCATCTCATGGTATAGTGTGAAA
TTTTTGTTCTTTCACATTGgctgtttataaaaaaaattgcccGTCACCTG
ACCAACCGTATCGTAtatatctttttcaaaaaaattaggtttCAGAGGGT
TGGGAAGCTCGTTCCAATCTACTTGAACTTCATCATCACCCTCCACAGTT
TTTTACAAAGCTGGCATTGGACGTGAGACTCACGCATTTCAACAATGTCT
CACATAgctttttaaaagtttgatttctcatgcatttttgatatttggaa
aaatttccttctttttccaattttttgaaaaaagttttccagattttctg
attttcaaaaaagatttccctgattttctgattttctgaaaaatcttttc
ccaatttctgattttttggaaaGACATTTCTGATTTCCGATATCGGGAAA
TCTCACGCAAAATGAACATCTCAAGTTGGCAGGTCTGCCAAACCCTTTTT
TAAGAATTGAGGTGACAGGAACTAAACTATTTTTTACAAACAGCCATTTT
CCAGGCAAtgtataaaataaatttcatagcCAAAACATACGTCAGCTAGT
TGATAATATAATGTAACCTGTGCCTCAATAAACTCAAGGAACATATgggt
aaaggccacatttttggtacactgtcccttccgttacgttTTTTCTCTAG
GGCATAAAACCTACTCAAAAAGTTAACTTCATCACATTATCCCCAAAAGA
GGAGACTTTTGCATCAGATTTAATCATGATATCGTGTATCTATTGCCCAG
CAagcaaatttttctaaaatgtacAGTTTGGTACCCTGattttgtccctt
ccgttacgctagttacttttagtcaaaatttcCTAGTCAAGTTTACTTGT
TGGGCCTCTTCttgtcagtttattattgggATGTTCCTAGATTCCATTTT
CATTCCATTGTATATgcactgatgatgttttttaataaaacgaaaagctt
atgctgaaaaatatttgttgaaatgttttttgaataataattaattttct
ggctattttattaCAACAATTTTCATgctctcatctaatttctaagctca
gttttttcaaaatttgtgccTGACATGGGAGATAGGACTCACCaaatttg
tcccttccgttacgcatGTATGATTTGGAATATTTAGTCAACTGATTCGC
AAGACTCATTTTCCTTTGGTGTAGTTTCTATACCCATAGGACTACTTATT
GTCACAAAAACATTTCTGAATTAGAATTTTTCTCATGGAGATACTGTGAA
GTGAATCTTGTTGTCCCTTCCGTAACgaatgtcccttccgttacggcatt
tttttataaatgctaatataataaaaattctgagactattttgttttttc
tgttcaaaaCTAAGGtatttgaagacattgcaatgtgtTTCAAGCTGAAA
AGGATTGAAACACTTCAATgacatttgatgaaaaataagcAGAAAAGTGT
CCCTTCTGTTACGTTTTTATCATTTAGTTGGTATTTTATGATAGTATCTA
TCATAGTAATCATAGTTTTGGTAGATTTGTTAGACCCTTTGGTTAGCTTC
CTTCTATTATACCCAAAAAAGATGTTCCATcgttaaaaataagttaaata
tttaaaaaaaaagacatattaCAAAATAATTTACACATCAACTGATaatt
tgtcccttccgttacacAAAATACACTCTaccgtcaacttgaaaaatatt
tattcaaaatttatcaGTGGGATTGATTAAACAACTCTGAAGAAGCATTT
TTCAATAAGTGTCTTTCTTGAAATTGCAATATATAGGGAGAAACACCTAG
TCTCCATTGGTTTATTGATAAGGGTTAAAAACTTGACCGGGTGGCAATTA
GAGCTACAAACCTTTTATAAAACAATGTTATTGAGGGGCACGCAATTGAT
TATTATGGTAGAACCATTACTTAAtacaaataaataagttaagaaGCTTT
TTGAGGATAAATGTTTTTTAGTGTAACTGAAGGGacaggtgtaccaaaaa
tgtggcctttacccATATGTGGATCTTTTATACCAATGAATGCTTTCAAT
ATAAAACGTTTTTGAAGGGTGTACAAAAACTGCAAAGAGaacttcagaaa
aaccaaaagtaaGATCCAATTTTTCTGAAGAGTAATTTTGATAATGTTTC
TGTGTTCAATAGCAATAGATTTGACCAATTTAACATTACCAAAAGTATTC
attaaatatgaaaaaaaaatctccaTGAAGAGTCagtgaaatgagtttct
ttgtATCTATTACATGaaagtttcttttatttttccattacAGTACACTA
TTGATTAATGCTGGTGCAATTCTCAATTTTAAGTTGTAAgtcaaaatttt
atttgtttgttgCATTTTACTGTTAAGTTACCTTTAGTGATTCAATTTTT
AATCATCATAAAAGTTATATACTACTTATAAACATTGCTTTGTCCATCAT
AATGCGAACCCTCTCCTTATACTCCTTTAAAGCCAAAATCCCTTGAAATT
AAGGTTTTTGACCTTCactttaaaaactttatttcatagaaagaagaaaa
gtgGAGAAACCTTTGGTGAAGAGGAGCCCAGTGCTAGTATGAGtttataa
ttcttttttcattgtttcttgAGATCTGCATCACTTCTCTCCACACAGTG
TTCACAGTTGCAAGAACATTTTTGTTGTGTAGAATAGTACTTGTATTACT
TGTTTTAGATTAGATATCATTAAATTGAATTTGGTccaggggggggcacg
cagttactacaagacagtatgacacttactaccgtggtggtactgtattc
agaagttatgaaaacagttactacacagtgtagtaactgctgtttggggg
tggtgccaaacatttttggtgtagtaagtgcttatattttaattcttttt
aaagaactttcaaaatttttcacaaaaaatgaatttctttgtgaaaaaat
tctttgttaaaaaaaatatttttgttataaatggacgaaaaaaaatttga
aatttttctcagacccaactttgaaattatgctctccctaattatcatta
aaatgttctcaacagctgttaaccaagtaaattaaaagaaaatctagcac
aaaaatggctttaggttgaaaaataatcgcaattNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGGGTAATTTCGaggatgtttttgatgatatcactcaa
aaacaggggtggtacctggaaatcttttctgaaaacagttactaccaagg
tgtagtaactgcaaagggtgatggtcctgaaaaaaagtgttgaaaaagca
cttactacacatcatgtcttgtagtaactgcgtgcccccccctgtttggt
cttgaaaaaaatctgttttcAATTATATAAGGTAAATGCAAAGGATAGTG
TCTCTATGGACCCAATTTCCATTAAAAAATATGTTCACATGAATTGTTGT
ATTATCAATTAaccttttttcattggctgctttGCCCTCTTTTTATTCAG
TATCACGACCATAGCATACTgtaattgggcttttccattAAAATCCATAT
AGAGAGGTGgaagaacattttcaattccattattattattattatttgag
aTATGNcggattcttccagtcgtttatacaaactaaatcccgtattatta
ttattatttgagatatattttgataatgtttCGATAATGCactatttata
aaagttttccTTCTATCGAAGATAGATTAGgtacactttttctattgtaa
taTTAGAACAAGAActaaaaaataggaaaaattgaatattaagTCTCGAT
GGAATATCTTAgtaaacaattttgtaaatatcttAATAACTTAccgagaa
atttttcaaagtcttgCAAAACTATCATTTTgcatttctgaaaaatttgt
cgCTTTCCAAGGCGTCTCATGGAAAACCAAAGTAATTTAGATGAGACTTA
GCAAATAGAATCcggtttattattattattgttattattattgttattaa
tgtaataaaaaattctttttatacCTTAAAGTGTGGCACTGAACGAACTA
AAACCAGTCCTTTATTCCCTGGAGACTTACGAATAACTTTTTACaccctg
gaaaatgaaaaaacactgtgtggatataaaatagaatggcccattgtatc
atttgttttatgattTGAGTTTTGTCAAAAGATTCTGGAAAGCAGTGATG
TTTTAATGTAATAGAGAAACCACCTTCGTGATACTGTAAgccttcttttt
tctcttttttagaagAAAAGGTGATCGAATTCTTATTGAATTTACGATAT
TTTCGAATCTTCATCGGATTATGGAATATTGTTATCATTTTTCTAATGTT
TGTGTAAGTATATATTTCCTATTTCCTATATtccataatttcaattttcc
taTTCCCTATATtccataatttcaattttcctaTTTCCTATATtccataa
tttcaattttcctaTTCCCTATATtccataatttcaattttcctaTTCCC
TATATtccataatttcaattttcctaTTTCCTATATTCCATAATTTCAAT
TTATCCTATTCCCTATATtccataatttcaattttcctaTTCCCTATATt
ccataatttcaattttcctaTTCCCTATATTCCATAATTTCAAGCTCTCT
GTACTGTAAGGTCTAGTTTAGAcagccgactttctgccctgtctattcta
attgttagagtaggcagagaGTGGACACAAAGTCGGCAGTTAAAATATTG
CTTGGAAAatattgaaagaagtcattaaATGGACGTTAAGAGATGGCAGT
GCATTTTCACTTTAGACAGTCCACTTTATGacaactttaattcacaatta
gaataggcaggacgaaaagtgggccgtctaaactagtaCTAACAACCCTT
TCTTAGCTCAGTTAGCTCATTCATTATAAATTTTCTGATCGTTGTCAAAT
GAGTGAATAAACCTAGATTGTTTCATCTGTTTGAGCGATAATGGGGAACT
GATAGAATGAGCCTTGCCTATCATGTTAAGTGAAAAAAGAGCTTATGAGA
GACGTTAGCTGAACATACTTTTTACAAATTTGTATATAcaataacacccc
tgtatcgTTGACCCAGTGAAGTAAAACTGATGGAGAAATGAAATGCCAAA
ATGTTTATGAAATAACTCTTTCTTTTTGTGGATCGGCATTTAGAATTAGT
AGAAGCCTTAATTAAAAAAGACGACCCTCAGAATAGAATATTCTTTATTT
ACAGATAAAtgaattaaaataattttgtcttttttcaggTTCTTCTCTGG
CTAATGACTGGATCAAAGCAAATATTGGTTAGATGAGACCTTCTGGAATA
AGTCCAAAAAgggaaacaaacaaacaaatcaaGATTATGTACATAGTAAC
TATCTCTTTATATTTGGTATTCTCACTTATTTATTTTACATCAATCAGAG
AAACATTTtagtaaatcttttttaaacagTCAAATTTTAGTTCTTCCGTC
TCAATTAAGTATACAAACAAAAAggcttttccgtctcaaaattctgcata
attcaccaatATTTCAAGAAGCTAATTTGCTAAATCCATGTTCTGTCTCA
GACGAAAAACCTTGAGTTGGTCGGAGGCGAACCGAATAGGAataggctcc
tctttcgatactGTAGCTATCTACTGAAGGTAGGGGATGGTGCCACTTTT
CCTCCAATATTCAAAATCAAAGATGTTTTTCAGATCATTATCTTCTGTCC
CGACTCCCTACGAAAGGGAATAAGTTTCTAGTggactgttgtcatttatg
cgGCATCTTTAAACTAGGATTTTTTTGTATTCTCACAGCCCCAGGTGGGA
TgaagatttttatgaaaattccaTTGGGGATAGAAGTTCTATTGTTTCAA
CCTCAAAATATCCAATGGGGACGtttttggagtgcatttttCCCatggaa
tttcaaatggggatgaaatcaaagtcaatttcccataAGGGCTAAAACTG
TGAGTGTATTTTTCCAACTGGAGATgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061390-exon-scaffold_358-1491911889:291137..291360 | TCONS_00061390-exon-scaffold_358-1491911889:291137..291360 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1510915933:291137..291360 | TCONS_00061390-exon-scaffold_358-1510915933:291137..291360 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1575043694:291137..291360 | TCONS_00061390-exon-scaffold_358-1575043694:291137..291360 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1491911889:296080..296121 | TCONS_00061390-exon-scaffold_358-1491911889:296080..296121 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1510915933:296080..296121 | TCONS_00061390-exon-scaffold_358-1510915933:296080..296121 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1575043694:296080..296121 | TCONS_00061390-exon-scaffold_358-1575043694:296080..296121 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1491911889:296326..296372 | TCONS_00061390-exon-scaffold_358-1491911889:296326..296372 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1510915933:296326..296372 | TCONS_00061390-exon-scaffold_358-1510915933:296326..296372 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1575043694:296326..296372 | TCONS_00061390-exon-scaffold_358-1575043694:296326..296372 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1491911889:298049..298139 | TCONS_00061390-exon-scaffold_358-1491911889:298049..298139 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1510915933:298049..298139 | TCONS_00061390-exon-scaffold_358-1510915933:298049..298139 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1575043694:298049..298139 | TCONS_00061390-exon-scaffold_358-1575043694:298049..298139 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1491911889:299075..299814 | TCONS_00061390-exon-scaffold_358-1491911889:299075..299814 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1510915933:299075..299814 | TCONS_00061390-exon-scaffold_358-1510915933:299075..299814 | Clytia hemisphaerica | exon |
| TCONS_00061390-exon-scaffold_358-1575043694:299075..299814 | TCONS_00061390-exon-scaffold_358-1575043694:299075..299814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:291137..299814 + |
Blast
BLAST of TCONS_00061390 vs. Swiss-Prot (Human)
Match: SMIM7 (Small integral membrane protein 7 OS=Homo sapiens GN=SMIM7 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.752e-21 Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query: 199 MIADFIICCTLLINAGAILNFKLKKKSGETFGEE--EPSAKEKVIEFLLNLRYFRIFIGLWNIVIIFLMFVFFS 414
MI D ++ TLL+NAGA+LNFKLKKK + FGEE EPS + + EFLL+LRYFRIFI LWNI ++F M V F
Sbjct: 1 MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNIFMMFCMIVLFG 74
The following BLAST results are available for this feature:
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