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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061418 ID=TCONS_00061418|Name=TCONS_00061418|organism=Clytia hemisphaerica|type=transcript|length=3654bpRun BLAST on NCBI protein sequence of TCONS_00061418-protein >TCONS_00061418-protein ID=TCONS_00061418-protein|Name=TCONS_00061418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=898bp MEALNWQPDQQGLEQILQLLKESQSPDTETQRAVQEKLESLNQFPDFNNYRun BLAST on NCBI transcript from alignment at scaffold_358:751858..786492+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061418 ID=TCONS_00061418|Name=TCONS_00061418|organism=Clytia hemisphaerica|type=transcript|length=34635bp|location=Sequence derived from alignment at scaffold_358:751858..786492+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:751858..786492+ >TCONS_00061418 ID=TCONS_00061418|Name=TCONS_00061418|organism=Clytia hemisphaerica|type=CDS|length=59334bp|location=Sequence derived from alignment at scaffold_358:751858..786492+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061418 vs. Swiss-Prot (Human)
Match: TNPO1 (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2) HSP 1 Score: 1322.38 bits (3421), Expect = 0.000e+0 Identity = 653/905 (72.15%), Postives = 760/905 (83.98%), Query Frame = 1
Query: 94 IWRRDKMEALNWQPDQQGLEQILQLLKESQSPDTETQRAVQEKLESLNQFPDFNNYLIFVLTKLKTDGIDEPTRSLAGLILKNNVKSNYTKFPAECRQFVKAECLYAIGDPSPLIRATIGILITTIAQK-EFGTWPELLPMLMRMLDSEDYNVCEGAFGALQKICEDLSRQLEGENHTQILNVMIPKFLQFFKHQSPKLRSHALACVNQFIICRSQVLMNNIDKFMEGLFALSNDDDAEVRKNVCRAIVMLVEVRVEQLIPNMNNLVEYMLIRTQDSEDSVALEACEFWLALAEQPICKQVLQPFLPRLVPILVNGMKYSGMDIMLLKGDVEEDETIPDNEQDIRPRFHKSKIHNLDQRENSKXXXXXXXXXXXXXXXXXXXXFLTDWNLRKCSAAALDVLATVFRDDLLPFLLPILKEILFHPDWVTKESGILVLGAIAEGCVNGINPHLPELVPFLITSLNDKKALVRSITCWTLSRYSHWIVSQPHELYLQKLMTELLKRVLDKNKRVQEAACSAFATLEEEACTELVPYLGFILETLVFAFNKYQHKNLLILYDAIGTLADSVGPHLNKPEYINMLMPPLISKWNALKDEDKDLFPLLECLSSVATALQSGFLPYAEPVYYRCVSLVEQTLAQCYAAQMNPGQFEMPDKDFMVVALDLLSGLAEGLEGQIEQFVKDSNIMALLFQCMQDPGLEVKQSSFALLGDLTKACFQHVKPATRDIIPILGQNLNPEFISVCNNATWAIGELAIMLGAEMNEFLSVVLQQLISIINRPKTPKTLLENTAITIGRLGLVCPSDISPHLAQFIRPWCTSLRNIRDNDEKDSAFRGICALIGLNPGGVVQDFIFFCDAVASWNSPAADLKEMFNSILFGFKNQVGDENWQRFSDQFPPPLKERLKTHYGI 2805
+W R W+PD+QGL+QILQLLKESQSPDT QR VQ+KLE LNQ+PDFNNYLIFVLTKLK++ DEPTRSL+GLILKNNVK+++ FP F+K+ECL IGD SPLIRAT+GILITTIA K E WP+LLP L +LDSEDYN CEGAFGALQKICED + L+ + + LN+MIPKFLQFFKH SPK+RSHA+ACVNQFII R+Q LM +ID F+E LFAL+ D++ EVRKNVCRA+VML+EVR+++L+P+M+N+VEYML RTQD +++VALEACEFWL LAEQPICK VL LP+L+P+LVNGMKYS +DI+LLKGDVEEDETIPD+EQDIRPRFH+S+ + Q+ + +++ +D D D D ++DWNLRKCSAAALDVLA V+RD+LLP +LP+LKE+LFH +WV KESGILVLGAIAEGC+ G+ P+LPEL+P LI L+DKKALVRSITCWTLSRY+HW+VSQP + YL+ LMTELLKR+LD NKRVQEAACSAFATLEEEACTELVPYL +IL+TLVFAF+KYQHKNLLILYDAIGTLADSVG HLNKPEYI MLMPPLI KWN LKDEDKDLFPLLECLSSVATALQSGFLPY EPVY RCV+LV++TLAQ P Q+E PDKDFM+VALDLLSGLAEGL G IEQ V SNI+ L++QCMQD EV+QSSFALLGDLTKACFQHVKP D +PILG NLNPEFISVCNNATWAIGE++I +G EM ++ +VL QL+ IINRP TPKTLLENTAITIGRLG VCP +++P L QFIRPWCTSLRNIRDN+EKDSAFRGIC +I +NP GV+QDFIFFCDAVASW +P DL++MF IL GFKNQVGDENW+RFSDQFP PLKERL YG+
Sbjct: 2 VWDRQTKMEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE--DEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSR--TVAQQHDEDGIEEEDDDDDEIDDDDT----ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898 The following BLAST results are available for this feature:
BLAST of TCONS_00061418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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