TCONS_00061460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061460
Unique NameTCONS_00061460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061460 ID=TCONS_00061460|Name=TCONS_00061460|organism=Clytia hemisphaerica|type=transcript|length=1315bp
TCAATCAAGTCATTTACAAAAACATCTTCGTACTCATACTGGTGAAAAAC
CGTACAAATGTGATATTTGTGGAAAAGGATTTATTCAATCAGGTGATTTG
ACAAAACATCTTCGTACTCATACTGGTGAAAAACCGTACAAATGTGATAT
TTgtggaaaaaaatttaatgattcaaGCTATTTACAAAGACATTTTCGTT
CTCATACTGGTGAAAAACTACAAATGTGATATTTGTGGAAAAGTTTCGAA
TAGTTCTGGTGATTTGTCAAAACACATCTTCGTACTCATACTAGTGAAAA
ACCTTACAAGTGTGATATTTGTGGAAAAGCATTTAGCGTTCCGTCTGATT
TAAAAAGACACCACCGCACCCATTCTAACGAACAAGTATAATACTGCAAT
GACCATTGGGTTTAAAGCCCGAACGGCTGGAGAGGAATCTTCaatctttc
tcaagcaagaaaaagtgaaatctTGAGATTTGTGCTGctttttgaatgaa
tgaatttagCGCCTTCCTTGTTTTCGAAATCTTGCGATAGCTTTTACTTT
TAATCCAGCGTTTGTgtgatgggaaataagtagttTCATTTTCAATCGAA
GATTTTTATCTCTAGTCCATTCAGGGAGGACTGAAAGGCCATTGTGAtaa
atatgtaatagttattgCATTGTAACTGGTCTATTGTACTTAAAATATGT
GATAACTGGTTTTTCGTCAACTTTTGGAGAGATTTAAAAACTTCTCTGTA
TTCATATATGgtctcatttttatataatttttctatgttattttttcgca
gacctctatagatcatagatatacttcctataagaagCTTTTTTTTGCTA
GAGGATGATCAGAAGCCTATTTTTCTCTggctttctttattttgataatc
ATAAAAACCTTCGAAAAATAATCGAATGGTCATTAAAGAAACACTTGTAT
GTTTGCTGAGAATAAAAAGAAACCTTTGCGGGCTATGTTGGTCCTAATGT
TGAACATGGTCTCGTACCTCAcatttgaaatatgatttacgGGGAATGTC
ACTTCTCTTAGCCATTTAGATGCTAATACAGTGAagtctccgtaactcga
acacgcatggGGAACACAATTATGTTCGAATTGTtgaggaaattttgagt
tatgaagTAAGGTTTTAAAACTagctcgagttaaggagacattcgagact
ccaatcaaaaaggaaaatttgagtaTATTTGCTTCTCAGGGTTTTTTTCG
CGAGCGTAAATTTTCGCGAAATgccttttcaagaattttcaaaatcacat
ttactttcttttttg
Run BLAST on NCBI

transcript from alignment at scaffold_358:672221..673787-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061460 ID=TCONS_00061460|Name=TCONS_00061460|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_358:672221..673787- (Clytia hemisphaerica)
TCAATCAAGTCATTTACAAAAACATCTTCGTACTCATAATGGTGAAAAAC CGTACAAATGTGAAATTTGTGGAAAAGGATTTAATCAGACTCCGCATTTA CAAAAACATCTTCGTACTCATAATGGTGAAAAACCGTACAAATGTGATAC TTGTGGAAAAAGATTTAATCAGACTCCGCATTTACAAACACATCTTCGTA CTCATACTGGTGAAAAACCGTACAAATGTGAAATTTGTGGAAAAAGATTT AATCAGACTCCGCATTTACAAACACATCTTCGTACTCATACTGGTGAAAA ACCGTACAAATGTGATATTTGTGGAAAAGGATTTATTCAATCAGGTGATT TGACAAAACATCTTCGTACTCATACTGGTGAAAAACCGTACAAATGTGAT ATTTGTGGAAAAAAATTTAATGATTCAAGCTATTTACAAAGACATTTTCG TTCTCATACTGGTGAAAAACTACAAATGTGATATTTGTGGAAAAGTTTCG AATAGTTCTGGTGATTTGTCAAAACACATCTTCGTACTCATACTAGTGAA AAACCTTACAAGTGTGATATTTGTGGAAAAGCATTTAGCGTTCCGTCTGA TTTAAAAAGACACCACCGCACCCATTCTAACGAACAAGTATAATACTGCA ATGACCATTGGGTTTAAAGCCCGAACGGCTGGAGAGGAATCTTCAATCTT TCTCAAGCAAGAAAAAGTGAAATCTTGAGATTTGTGCTGCTTTTTGAATG AATGAATTTAGCGCCTTCCTTGTTTTCGAAATCTTGCGATAGCTTTTACT TTTAATCCAGCGTTTGTGTGATGGGAAATAAGTAGTTTCATTTTCAATCG AAGATTTTTATCTCTAGTCCATTCAGGGAGGACTGAAAGGCCATTGTGAT AAATATGTAATAGTTATTGCATTGTAACTGGTCTATTGTACTTAAAATAT GTGATAACTGGTTTTTCGTCAACTTTTGGAGAGATTTAAAAACTTCTCTG TATTCATATATGGTCTCATTTTTATATAATTTTTCTATGTTATTTTTTCG CAGACCTCTATAGATCATAGATATACTTCCTATAAGAAGCTTTTTTTTGC TAGAGGATGATCAGAAGCCTATTTTTCTCTGGCTTTCTTTATTTTGATAA TCATAAAAACCTTCGAAAAATAATCGAATGGTCATTAAAGAAACACTTGT ATGTTTGCTGAGAATAAAAAGAAACCTTTGCGGGCTATGTTGGTCCTAAT GTTGAACATGGTCTCGTACCTCACATTTGAAATATGATTTACGGGGAATG TCACTTCTCTTAGCCATTTAGATGCTAATACAGTGAAGTCTCCGTAACTC GAACACGCATGGGGAACACAATTATGTTCGAATTGTTGAGGAAATTTTGA GTTATGAAGTAAGGTTTTAAAACTAGCTCGAGTTAAGGAGACATTCGAGA CTCCAATCAAAAAGGAAAATTTGAGTATATTTGCTTCTCAGGGTTTTTTT CGCGAGCGTAAATTTTCGCGAAATGCCTTTTCAAGAATTTTCAAAATCAC ATTTACTTTCTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038551XLOC_038551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061460-exon-scaffold_358-1575043694:673765..673787TCONS_00061460-exon-scaffold_358-1575043694:673765..673787Clytia hemisphaericaexon
TCONS_00061460-exon-scaffold_358-1575043694:672221..673512TCONS_00061460-exon-scaffold_358-1575043694:672221..673512Clytia hemisphaericaexon
TCONS_00061460-exon-scaffold_358-1510915933:673765..673787TCONS_00061460-exon-scaffold_358-1510915933:673765..673787Clytia hemisphaericaexon
TCONS_00061460-exon-scaffold_358-1510915933:672221..673512TCONS_00061460-exon-scaffold_358-1510915933:672221..673512Clytia hemisphaericaexon
TCONS_00061460-exon-scaffold_358-1491911889:673765..673787TCONS_00061460-exon-scaffold_358-1491911889:673765..673787Clytia hemisphaericaexon
TCONS_00061460-exon-scaffold_358-1491911889:672221..673512TCONS_00061460-exon-scaffold_358-1491911889:672221..673512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:672221..673787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460258 0.262425 0.0703448 0.395785 0 0 0 0 0 0 0 0 0 0 0.0352674 0 0.108198 0.125766 0.149067 0.0697252 0.0484607 0 0.293203 0.450124 0 0 0.166721 0 0.264012 0.150542
Blast
BLAST of TCONS_00061460 vs. Swiss-Prot (Human)
Match: ZN436 (Zinc finger protein 436 OS=Homo sapiens GN=ZNF436 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.010e-35
Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 2
Query:    2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCNDHW 409
            +SSHL +H RTHTGEKPY+C+ CG+GF +  DL KH R HTGE+PYKCD CGK F+ +S L RH R+HTGEK        ++F      V+ H RTHT EKPY+C+ CGK+FS  S L  H + H+ E+   CN+ W
Sbjct:  261 RSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQ-HQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECW 396          

HSP 2 Score: 127.102 bits (318), Expect = 4.585e-32
Identity = 69/135 (51.11%), Postives = 90/135 (66.67%), Query Frame = 2
Query:    2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403
            +SSHL +H   HTGEKP+KC+ CGK F +   L +H RTH+GEKPY+C+ CGK F+ SS+L +H R+HTGEK  +     + F      +K H R HT E+PYKCD CGK FS  SDL RH R H+ E+  +CN+
Sbjct:  205 RSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIK-HYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNE 338          

HSP 3 Score: 121.324 bits (303), Expect = 3.958e-30
Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 2
Query:    2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEKL-QM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403
            Q S L +H +THTG++PYKC  CGKGF +S  L +H RTHTGE+PY C+ CGK F  SS+L +H   HTGEK  +     KSF      ++ H RTH+ EKPY+C+ CGK+FS  S L +H RTH+ E+   CN+
Sbjct:  149 QISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQ-HQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNE 282          

HSP 4 Score: 120.939 bits (302), Expect = 6.153e-30
Identity = 66/132 (50.00%), Postives = 88/132 (66.67%), Query Frame = 2
Query:    8 SHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCN 400
            SHL +H RTH+GEKPY+C+ CGK F +S  L +H RTHTGEKPY+C+ CG+ F++ S L +H+R HTGE+  +     K+F      V+ H R HT EKPY C+ CG+ FS  S L +H RTH+ E+   CN
Sbjct:  235 SHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVR-HRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECN 365          

HSP 5 Score: 120.168 bits (300), Expect = 9.942e-30
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 2
Query:    2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403
            Q+S L +H R HTGEKPY C+ CG+ F +   L +H RTHTGEKPY+C+ CGK F+ SS+L  H + HTGEK  +    W+SF      +K H RTHT EKPY+C  CGK F+  S+L  H R H+ E+   C +
Sbjct:  317 QNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIK-HQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTE 450          

HSP 6 Score: 109.383 bits (272), Expect = 5.011e-26
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:    8 SHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSN 379
            SHL +H RTHTGEKPY+C+ CGK F +S  L  H + HTGEKPY+C+ C + F + S L +H R+HTGEK  +     K F      + TH R HT EKPY+C  C K+FS  S L +H R H++
Sbjct:  347 SHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLI-THQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD 470          

HSP 7 Score: 96.6709 bits (239), Expect = 1.639e-21
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 2
Query:   14 LQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403
            L  H   HTG + + C  CGK F Q  DL +H +THTG++PYKC  CGK F+ SS+L +H R+HTGE+        KSF      ++ H   HT EKP+KC+ CGK+F   S L +H RTHS E+   C +
Sbjct:  125 LLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQ-HQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEE 254          

HSP 8 Score: 83.5741 bits (205), Expect = 3.200e-17
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 2
Query:    2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHT 208
            + S L KH RTHTGEKPY+C  CGKGF QS +L  H R HTGEKPY+C  C K F+ SS L +H R HT
Sbjct:  401 ERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHT 469          
The following BLAST results are available for this feature:
BLAST of TCONS_00061460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN4364.010e-3552.55Zinc finger protein 436 OS=Homo sapiens GN=ZNF436 ... [more]
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