Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061460 ID=TCONS_00061460|Name=TCONS_00061460|organism=Clytia hemisphaerica|type=transcript|length=1315bpRun BLAST on NCBI transcript from alignment at scaffold_358:672221..673787- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061460 ID=TCONS_00061460|Name=TCONS_00061460|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_358:672221..673787- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00061460 vs. Swiss-Prot (Human)
Match: ZN436 (Zinc finger protein 436 OS=Homo sapiens GN=ZNF436 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 4.010e-35 Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 2 Query: 2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCNDHW 409 +SSHL +H RTHTGEKPY+C+ CG+GF + DL KH R HTGE+PYKCD CGK F+ +S L RH R+HTGEK ++F V+ H RTHT EKPY+C+ CGK+FS S L H + H+ E+ CN+ W Sbjct: 261 RSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQ-HQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECW 396 HSP 2 Score: 127.102 bits (318), Expect = 4.585e-32 Identity = 69/135 (51.11%), Postives = 90/135 (66.67%), Query Frame = 2 Query: 2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403 +SSHL +H HTGEKP+KC+ CGK F + L +H RTH+GEKPY+C+ CGK F+ SS+L +H R+HTGEK + + F +K H R HT E+PYKCD CGK FS SDL RH R H+ E+ +CN+ Sbjct: 205 RSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIK-HYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNE 338 HSP 3 Score: 121.324 bits (303), Expect = 3.958e-30 Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEKL-QM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403 Q S L +H +THTG++PYKC CGKGF +S L +H RTHTGE+PY C+ CGK F SS+L +H HTGEK + KSF ++ H RTH+ EKPY+C+ CGK+FS S L +H RTH+ E+ CN+ Sbjct: 149 QISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQ-HQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNE 282 HSP 4 Score: 120.939 bits (302), Expect = 6.153e-30 Identity = 66/132 (50.00%), Postives = 88/132 (66.67%), Query Frame = 2 Query: 8 SHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCN 400 SHL +H RTH+GEKPY+C+ CGK F +S L +H RTHTGEKPY+C+ CG+ F++ S L +H+R HTGE+ + K+F V+ H R HT EKPY C+ CG+ FS S L +H RTH+ E+ CN Sbjct: 235 SHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVR-HRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECN 365 HSP 5 Score: 120.168 bits (300), Expect = 9.942e-30 Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 2 Query: 2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403 Q+S L +H R HTGEKPY C+ CG+ F + L +H RTHTGEKPY+C+ CGK F+ SS+L H + HTGEK + W+SF +K H RTHT EKPY+C CGK F+ S+L H R H+ E+ C + Sbjct: 317 QNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIK-HQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTE 450 HSP 6 Score: 109.383 bits (272), Expect = 5.011e-26 Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 2 Query: 8 SHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSN 379 SHL +H RTHTGEKPY+C+ CGK F +S L H + HTGEKPY+C+ C + F + S L +H R+HTGEK + K F + TH R HT EKPY+C C K+FS S L +H R H++ Sbjct: 347 SHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLI-THQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD 470 HSP 7 Score: 96.6709 bits (239), Expect = 1.639e-21 Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = 2 Query: 14 LQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 403 L H HTG + + C CGK F Q DL +H +THTG++PYKC CGK F+ SS+L +H R+HTGE+ KSF ++ H HT EKP+KC+ CGK+F S L +H RTHS E+ C + Sbjct: 125 LLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQ-HQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEE 254 HSP 8 Score: 83.5741 bits (205), Expect = 3.200e-17 Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 2 Query: 2 QSSHLQKHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHT 208 + S L KH RTHTGEKPY+C CGKGF QS +L H R HTGEKPY+C C K F+ SS L +H R HT Sbjct: 401 ERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHT 469 The following BLAST results are available for this feature:
BLAST of TCONS_00061460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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