TCONS_00061564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061564
Unique NameTCONS_00061564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061564 ID=TCONS_00061564|Name=TCONS_00061564|organism=Clytia hemisphaerica|type=transcript|length=1284bp
CACACTGGTGTTATACGTGCCATGACAGCAAGATGGCCATATGTATTTAG
CGGAGCAGCTGATCACTCAATCAAAGTTTGGGACATCAGAGACAAGGACA
TGAAAAATTCCAAAGGCTGCATTGCCACGTTTGCTGGACACTCTGGTGAT
ATTCATGCACTGTGTTTTGCCAATGGTTATGTGTTCAGTGCCAGTACGGA
TAAATCGTTAAAAGTATGGAGTGTGGAAACGTTTCAACTACATAATTCTG
TTGAAGATGCACATTCAGATATCATTGGAGCCCTTGCTTCAACTGGGCGT
TACATTTTTAGTGGATCATACTCTTCAATAAAGATATGGCGCGCCTCAGA
CTTAAAGTTGATGCATACAATATCAGACACTGGGCATTGGATCAGAGCGT
TTGCAGTTGGACCAAACAGGGACAAGGTGTACAGTGGATCACACAATGCA
GTTAATGTGTGGGAGACAGAAGAACCATTCCGTTCCGCTGGCACACTCAC
TCATTCGCATGGTTCAGTGTACTCGCTTGCTGCGACCAAAGAATATCTGA
TATTAGGAACCTACAATCAGAATTCACATTTGTACGACATTAACACACTG
GAGTATGTTAAAGTACTGACAGGTCATCTTGGTATCATCAACTCCTTATT
ACCATCGCCAAGCGGAAGATTCTTGTTTACAGGATCTCATGACCACACCG
TACAGCTTTGGGATATGATGAAGCTTTTGCCAATTCAAGTGTTAAGCCGT
CATGAAGGAAGTGTAAATTGTATGGCATTGTCTGGTGATATGATTTTCAC
TGGTTCAGAAGATAAAGAAATCAAGGTGTACATGTACTACCAAGGGTTGG
CATCAAAGAACTTGATGGTTGTATAGAAGCCAATAATTCCGCAAACAACA
CTCACTGTTTGGCTTCTTTTGATGATACTAGCGATGATTGAATTGAAATG
CTTATGGTAAGGAATAGCTTATCCTTTGATCATGTGAGGTATTCTTTGTT
CCTTTGAGATTTGGTACATAGCTTCCAGGATTATCTTCAATAAAAATCTA
GTTTTTTTAACTATTCTGACTAAGAATAGGAACATTTTTGGTCCAGCCTT
TAGATAACGTAACTTTTGATAATTGTCTTTAAATTCGATATTACGTGACC
CAAGTGATATAATCACATAGTTTATGAAATTTAATGTAtatgttttaaaa
ttgtttgGAATGTGTCTGGATTTTCAAACAATATATATTCAAGGGAATTC
GAAATCCTTTAAAGCTCTGCATCCTTGCTTGAGA
Run BLAST on NCBI

protein sequence of TCONS_00061564-protein

>TCONS_00061564-protein ID=TCONS_00061564-protein|Name=TCONS_00061564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
HTGVIRAMTARWPYVFSGAADHSIKVWDIRDKDMKNSKGCIATFAGHSGD
IHALCFANGYVFSASTDKSLKVWSVETFQLHNSVEDAHSDIIGALASTGR
YIFSGSYSSIKIWRASDLKLMHTISDTGHWIRAFAVGPNRDKVYSGSHNA
VNVWETEEPFRSAGTLTHSHGSVYSLAATKEYLILGTYNQNSHLYDINTL
EYVKVLTGHLGIINSLLPSPSGRFLFTGSHDHTVQLWDMMKLLPIQVLSR
HEGSVNCMALSGDMIFTGSEDKEIKVYMYYQGLASKNLMVV
Run BLAST on NCBI

transcript from alignment at scaffold_36:525051..527893+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061564 ID=TCONS_00061564|Name=TCONS_00061564|organism=Clytia hemisphaerica|type=transcript|length=2843bp|location=Sequence derived from alignment at scaffold_36:525051..527893+ (Clytia hemisphaerica)
CACACTGGTGTTATACGTGCCATGACAGCAAGATGGCCATATGTATTTAG
CGGAGCAGCTGATCACTCAATCAAAGTTTGGGACATCAGAGACAAGGACA
TGAAAAATTCCAAAGGCTGCATTGCCACGTTTGCTGGACACTCTGGTGAT
GTAAGTTTAAAATTATCATACTGGCAGACAAAACATCTTTGATTAAAGGA
AAACAAACaccttttaaaatttaaagaatttcaaaCAATATGATGAGGTG
TCAAATAATCAATGAGCATTAACAAACAAGCAAGCTTCTCTTTCTTAAAG
CTGAAAGCTCTCTAATAGACTAATAATCATTAATTACTTTTTGTCATTCT
AGATTCATGCACTGTGTTTTGCCAATGGTTATGTGTTCAGTGCCAGTACG
GATAAATCGTTAAAAGTATGGAGTGTGGAAACGTTTCAACTACATAATTC
TGTTGAAGTGAGTAGTAATAAATACTTAAATCTCTTTTTTTCCACTTCCA
CTTCACCATTCTTGTTGTCATAGAGACTCTTGGAATCATTTCTGAATTTT
TCTTGTCTAATTTCGATTGTTTGCTTTTCTCTTAGGATGCACATTCAGAT
ATCATTGGAGCCCTTGCTTCAACTGGGCGTTACATTTTTAGTGGATCATA
CTCTTCAATAAAGGTATGATGAATTGATATACAATAGAGAAAAGTagcaa
atctttttttaaagatgTTTTATAGACAAATATATGAaattaaataacaa
aataaaaaaaataaaaaatgttaaataaacaTGATTGGCTAGAAAATATA
TTACTTATTTCTTCTacatgacagatattacataatatttatttactatt
tttatttCCTAAAGGTTTGACACATAACTTATGCTTTGTACTTTTAGATA
TGGCGCGCCTCAGACTTAAAGTTGATGCATACAATATCAGACACTGGGCA
TTGGATCAGAGCGTTTGCAGTTGGACCAAACAGGGTATGGTATTGGAATT
TCCTCCATGGTTCGGAAATGGATAGAATTAAATTCATATGTTTTATATTA
TGGTTACAATTAAGGTGctcttttttcaaagtaaaatctGGGGGTGGTGT
GGTCCTTTtcaaaattatcagaaatcTGTTAGTGTTCATAGTATTCCAGA
GTATCTGCTTCACCCCAACTCCTGTTCCACTATCAGCTTTAATAaattat
cattaaaaacagGACAAGGTGTACAGTGGATCACACAATGCAGTTAATGT
GTGGGAGACAGAAGAACCATTCCGTTCCGCTGGCACACTCACTCATTCGC
ATGGTTCAGTGTACTCGCTTGCTGCGACCAAAGAATATCTGATATTAGGT
AATCATCAATGCTCCTGCTAACTGCTCCTTTGAACGAAAATGAGAAAGTT
TATAGGTTTTACATTTTACTTTTGCAAAATTATATGTACAGATAAAGCTT
CAGAGAAATTTGAATCGGTGCGAATGGggcaatttttgtattttatcata
atttgttTTACTTTGTAGGAACCTACAATCAGAATTCACATTTGTACGAC
ATTAACACACTGGAGTATGTTAAAGTACTGACAGGTCATCTTGGTATCAT
CAACTCCTTATTACCATCGCCAAGCGGAAGATTCTTGTTTACAGGATCTC
ATGACCACACCGTACAGGTACTTTTTTCCTAAGATTTTTTTGCAAGCAGA
AACTTTAGTGATTTAGTATGGAACTATGATAAAATCGAATTCCTTTCATT
TTCCTCATTACCCCATCATAACTCAGATCCTTCTTATTTGGCAATGTGCA
AAACTTAATTCCTGACACTATTTCCTGATTCCCTGTGATACAATTAATTC
TCCATTTAGGCGGGCATAAACTGTATCCTTCCTTCATTTTGACAGATTCA
GCTTTTGGAAGGTTCGACTTTTGGGCCTCCTTATAAGAGTGAATTTTTag
aacaatattttcatttaaaagtcACCTTAATATTGTTTAGCTTTGGGATA
TGATGAAGCTTTTGCCAATTCAAGTGTTAAGCCGTCATGAAGGAAGTGTA
AATTGTATGGCATTGTCTGGTGATATGATTTTCACTGGTTCAGAAGATAA
AGAAATCAAGGTGAGGTTTCTTTTTATGGCCAAGCTCGAAATTCTTATTT
AAAGGGTTATATCTTGTTTATTTGCTATTATTGTGTCTTTAGCTGAAGAA
CAGGTTATGTTGTTCAtactattttgtaaatcttttaaTATGAAGTGAAA
GAGAAACAGTCAGGAAAGgttcaaaatttatcaataaaattCGTGTCAAA
AGGTAATCAATAAGATTGTTCCTGTTGTAAACATCAACAAGGTCACTTTG
ATGTCATGCTGATTACATCATGTTTCTTTAACAGGTGTACATGTACTACC
AAGGGTTGGCATCAAAGAACTTGATGGTTGTATAGAAGCCAATAATTCCG
CAAACAACACTCACTGTTTGGCTTCTTTTGATGATACTAGCGATGATTGA
ATTGAAATGCTTATGGTAAGGAATAGCTTATCCTTTGATCATGTGAGGTA
TTCTTTGTTCCTTTGAGATTTGGTACATAGCTTCCAGGATTATCTTCAAT
AAAAATCTAGTTTTTTTAACTATTCTGACTAAGAATAGGAACATTTTTGG
TCCAGCCTTTAGATAACGTAACTTTTGATAATTGTCTTTAAATTCGATAT
TACGTGACCCAAGTGATATAATCACATAGTTTATGAAATTTAATGTAtat
gttttaaaattgtttgGAATGTGTCTGGATTTTCAAACAATATATATTCA
AGGGAATTCGAAATCCTTTAAAGCTCTGCATCCTTGCTTGAGA

Coding sequence (CDS) from alignment at scaffold_36:525051..527893+

>TCONS_00061564 ID=TCONS_00061564|Name=TCONS_00061564|organism=Clytia hemisphaerica|type=CDS|length=7008bp|location=Sequence derived from alignment at scaffold_36:525051..527893+ (Clytia hemisphaerica)
CACACTGGTGTTATACGTGCCATGACAGCAAGATGGCCATATGTATTTAG
CGGAGCAGCTGATCACTCAATCAAAGTTTGGGACATCAGAGACAAGGACA
TGAAAAATTCCAAAGGCTGCATTGCCACGTTTGCTGGACACTCTGGTGAT
ATTCATGCACTGTGTTTTGCCAATGGTTATGTGTTCAGTGCCAGTACGGA
TAAATCGTTAAAAGTATGGAGTGTGGAAACGTTTCAACTACATAATTCTG
TTGAAGATGCACATTCAGATATCATTGGAGCCCTTGCTTCAACTGGGCGT
TACATTTTTAGTGGATCATACTCTTCAATAAAGATATGGCGCGCCTCAGA
CTTAAAGTTGATGCATACAATATCAGACACTGGGCATTGGATCAGAGCGT
TTGCAGTTGGACCAAACAGGGACAAGGTGTACAGTGGATCACACAATGCA
GTTAATGTGTGGGAGACAGAAGAACCATTCCGTTCCGCTGGCACACTCAC
TCATTCGCATGGTTCAGTGTACTCGCTTGCTGCGACCAAAGAATATCTGA
TATTAGGAACCTACAATCAGAATTCACATTTGTACGACATTAACACACTG
GAGTATGTTAAAGTACTGACAGGTCATCTTGGTATCATCAACTCCTTATT
ACCATCGCCAAGCGGAAGATTCTTGTTTACAGGATCTCATGACCACACCG
TACAGCTTTGGGATATGATGAAGCTTTTGCCAATTCAAGTGTTAAGCCGT
CATGAAGGAAGTGTAAATTGTATGGCATTGTCTGGTGATATGATTTTCAC
TGGTTCAGAAGATAAAGAAATCAAGGTGTACATGTACTACCAAGGGTTGG
CATCAAAGAACTTGATGGTTGTATAGCACACTGGTGTTATACGTGCCATG
ACAGCAAGATGGCCATATGTATTTAGCGGAGCAGCTGATCACTCAATCAA
AGTTTGGGACATCAGAGACAAGGACATGAAAAATTCCAAAGGCTGCATTG
CCACGTTTGCTGGACACTCTGGTGATATTCATGCACTGTGTTTTGCCAAT
GGTTATGTGTTCAGTGCCAGTACGGATAAATCGTTAAAAGTATGGAGTGT
GGAAACGTTTCAACTACATAATTCTGTTGAAGATGCACATTCAGATATCA
TTGGAGCCCTTGCTTCAACTGGGCGTTACATTTTTAGTGGATCATACTCT
TCAATAAAGATATGGCGCGCCTCAGACTTAAAGTTGATGCATACAATATC
AGACACTGGGCATTGGATCAGAGCGTTTGCAGTTGGACCAAACAGGGACA
AGGTGTACAGTGGATCACACAATGCAGTTAATGTGTGGGAGACAGAAGAA
CCATTCCGTTCCGCTGGCACACTCACTCATTCGCATGGTTCAGTGTACTC
GCTTGCTGCGACCAAAGAATATCTGATATTAGGAACCTACAATCAGAATT
CACATTTGTACGACATTAACACACTGGAGTATGTTAAAGTACTGACAGGT
CATCTTGGTATCATCAACTCCTTATTACCATCGCCAAGCGGAAGATTCTT
GTTTACAGGATCTCATGACCACACCGTACAGCTTTGGGATATGATGAAGC
TTTTGCCAATTCAAGTGTTAAGCCGTCATGAAGGAAGTGTAAATTGTATG
GCATTGTCTGGTGATATGATTTTCACTGGTTCAGAAGATAAAGAAATCAA
GGTGTACATGTACTACCAAGGGTTGGCATCAAAGAACTTGATGGTTGTAT
AGCACACTGGTGTTATACGTGCCATGACAGCAAGATGGCCATATGTATTT
AGCGGAGCAGCTGATCACTCAATCAAAGTTTGGGACATCAGAGACAAGGA
CATGAAAAATTCCAAAGGCTGCATTGCCACGTTTGCTGGACACTCTGGTG
ATATTCATGCACTGTGTTTTGCCAATGGTTATGTGTTCAGTGCCAGTACG
GATAAATCGTTAAAAGTATGGAGTGTGGAAACGTTTCAACTACATAATTC
TGTTGAAGATGCACATTCAGATATCATTGGAGCCCTTGCTTCAACTGGGC
GTTACATTTTTAGTGGATCATACTCTTCAATAAAGATATGGCGCGCCTCA
GACTTAAAGTTGATGCATACAATATCAGACACTGGGCATTGGATCAGAGC
GTTTGCAGTTGGACCAAACAGGGACAAGGTGTACAGTGGATCACACAATG
CAGTTAATGTGTGGGAGACAGAAGAACCATTCCGTTCCGCTGGCACACTC
ACTCATTCGCATGGTTCAGTGTACTCGCTTGCTGCGACCAAAGAATATCT
GATATTAGGAACCTACAATCAGAATTCACATTTGTACGACATTAACACAC
TGGAGTATGTTAAAGTACTGACAGGTCATCTTGGTATCATCAACTCCTTA
TTACCATCGCCAAGCGGAAGATTCTTGTTTACAGGATCTCATGACCACAC
CGTACAGCTTTGGGATATGATGAAGCTTTTGCCAATTCAAGTGTTAAGCC
GTCATGAAGGAAGTGTAAATTGTATGGCATTGTCTGGTGATATGATTTTC
ACTGGTTCAGAAGATAAAGAAATCAAGGTGTACATGTACTACCAAGGGTT
GGCATCAAAGAACTTGATGGTTGTATAGCACACTGGTGTTATACGTGCCA
TGACAGCAAGATGGCCATATGTATTTAGCGGAGCAGCTGATCACTCAATC
AAAGTTTGGGACATCAGAGACAAGGACATGAAAAATTCCAAAGGCTGCAT
TGCCACGTTTGCTGGACACTCTGGTGATATTCATGCACTGTGTTTTGCCA
ATGGTTATGTGTTCAGTGCCAGTACGGATAAATCGTTAAAAGTATGGAGT
GTGGAAACGTTTCAACTACATAATTCTGTTGAAGATGCACATTCAGATAT
CATTGGAGCCCTTGCTTCAACTGGGCGTTACATTTTTAGTGGATCATACT
CTTCAATAAAGATATGGCGCGCCTCAGACTTAAAGTTGATGCATACAATA
TCAGACACTGGGCATTGGATCAGAGCGTTTGCAGTTGGACCAAACAGGGA
CAAGGTGTACAGTGGATCACACAATGCAGTTAATGTGTGGGAGACAGAAG
AACCATTCCGTTCCGCTGGCACACTCACTCATTCGCATGGTTCAGTGTAC
TCGCTTGCTGCGACCAAAGAATATCTGATATTAGGAACCTACAATCAGAA
TTCACATTTGTACGACATTAACACACTGGAGTATGTTAAAGTACTGACAG
GTCATCTTGGTATCATCAACTCCTTATTACCATCGCCAAGCGGAAGATTC
TTGTTTACAGGATCTCATGACCACACCGTACAGCTTTGGGATATGATGAA
GCTTTTGCCAATTCAAGTGTTAAGCCGTCATGAAGGAAGTGTAAATTGTA
TGGCATTGTCTGGTGATATGATTTTCACTGGTTCAGAAGATAAAGAAATC
AAGGTGTACATGTACTACCAAGGGTTGGCATCAAAGAACTTGATGGTTGT
ATAGCACACTGGTGTTATACGTGCCATGACAGCAAGATGGCCATATGTAT
TTAGCGGAGCAGCTGATCACTCAATCAAAGTTTGGGACATCAGAGACAAG
GACATGAAAAATTCCAAAGGCTGCATTGCCACGTTTGCTGGACACTCTGG
TGATATTCATGCACTGTGTTTTGCCAATGGTTATGTGTTCAGTGCCAGTA
CGGATAAATCGTTAAAAGTATGGAGTGTGGAAACGTTTCAACTACATAAT
TCTGTTGAAGATGCACATTCAGATATCATTGGAGCCCTTGCTTCAACTGG
GCGTTACATTTTTAGTGGATCATACTCTTCAATAAAGATATGGCGCGCCT
CAGACTTAAAGTTGATGCATACAATATCAGACACTGGGCATTGGATCAGA
GCGTTTGCAGTTGGACCAAACAGGGACAAGGTGTACAGTGGATCACACAA
TGCAGTTAATGTGTGGGAGACAGAAGAACCATTCCGTTCCGCTGGCACAC
TCACTCATTCGCATGGTTCAGTGTACTCGCTTGCTGCGACCAAAGAATAT
CTGATATTAGGAACCTACAATCAGAATTCACATTTGTACGACATTAACAC
ACTGGAGTATGTTAAAGTACTGACAGGTCATCTTGGTATCATCAACTCCT
TATTACCATCGCCAAGCGGAAGATTCTTGTTTACAGGATCTCATGACCAC
ACCGTACAGCTTTGGGATATGATGAAGCTTTTGCCAATTCAAGTGTTAAG
CCGTCATGAAGGAAGTGTAAATTGTATGGCATTGTCTGGTGATATGATTT
TCACTGGTTCAGAAGATAAAGAAATCAAGGTGTACATGTACTACCAAGGG
TTGGCATCAAAGAACTTGATGGTTGTATAGCACACTGGTGTTATACGTGC
CATGACAGCAAGATGGCCATATGTATTTAGCGGAGCAGCTGATCACTCAA
TCAAAGTTTGGGACATCAGAGACAAGGACATGAAAAATTCCAAAGGCTGC
ATTGCCACGTTTGCTGGACACTCTGGTGATATTCATGCACTGTGTTTTGC
CAATGGTTATGTGTTCAGTGCCAGTACGGATAAATCGTTAAAAGTATGGA
GTGTGGAAACGTTTCAACTACATAATTCTGTTGAAGATGCACATTCAGAT
ATCATTGGAGCCCTTGCTTCAACTGGGCGTTACATTTTTAGTGGATCATA
CTCTTCAATAAAGATATGGCGCGCCTCAGACTTAAAGTTGATGCATACAA
TATCAGACACTGGGCATTGGATCAGAGCGTTTGCAGTTGGACCAAACAGG
GACAAGGTGTACAGTGGATCACACAATGCAGTTAATGTGTGGGAGACAGA
AGAACCATTCCGTTCCGCTGGCACACTCACTCATTCGCATGGTTCAGTGT
ACTCGCTTGCTGCGACCAAAGAATATCTGATATTAGGAACCTACAATCAG
AATTCACATTTGTACGACATTAACACACTGGAGTATGTTAAAGTACTGAC
AGGTCATCTTGGTATCATCAACTCCTTATTACCATCGCCAAGCGGAAGAT
TCTTGTTTACAGGATCTCATGACCACACCGTACAGCTTTGGGATATGATG
AAGCTTTTGCCAATTCAAGTGTTAAGCCGTCATGAAGGAAGTGTAAATTG
TATGGCATTGTCTGGTGATATGATTTTCACTGGTTCAGAAGATAAAGAAA
TCAAGGTGTACATGTACTACCAAGGGTTGGCATCAAAGAACTTGATGGTT
GTATAGCACACTGGTGTTATACGTGCCATGACAGCAAGATGGCCATATGT
ATTTAGCGGAGCAGCTGATCACTCAATCAAAGTTTGGGACATCAGAGACA
AGGACATGAAAAATTCCAAAGGCTGCATTGCCACGTTTGCTGGACACTCT
GGTGATATTCATGCACTGTGTTTTGCCAATGGTTATGTGTTCAGTGCCAG
TACGGATAAATCGTTAAAAGTATGGAGTGTGGAAACGTTTCAACTACATA
ATTCTGTTGAAGATGCACATTCAGATATCATTGGAGCCCTTGCTTCAACT
GGGCGTTACATTTTTAGTGGATCATACTCTTCAATAAAGATATGGCGCGC
CTCAGACTTAAAGTTGATGCATACAATATCAGACACTGGGCATTGGATCA
GAGCGTTTGCAGTTGGACCAAACAGGGACAAGGTGTACAGTGGATCACAC
AATGCAGTTAATGTGTGGGAGACAGAAGAACCATTCCGTTCCGCTGGCAC
ACTCACTCATTCGCATGGTTCAGTGTACTCGCTTGCTGCGACCAAAGAAT
ATCTGATATTAGGAACCTACAATCAGAATTCACATTTGTACGACATTAAC
ACACTGGAGTATGTTAAAGTACTGACAGGTCATCTTGGTATCATCAACTC
CTTATTACCATCGCCAAGCGGAAGATTCTTGTTTACAGGATCTCATGACC
ACACCGTACAGCTTTGGGATATGATGAAGCTTTTGCCAATTCAAGTGTTA
AGCCGTCATGAAGGAAGTGTAAATTGTATGGCATTGTCTGGTGATATGAT
TTTCACTGGTTCAGAAGATAAAGAAATCAAGGTGTACATGTACTACCAAG
GGTTGGCATCAAAGAACTTGATGGTTGTATAGCACACTGGTGTTATACGT
GCCATGACAGCAAGATGGCCATATGTATTTAGCGGAGCAGCTGATCACTC
AATCAAAGTTTGGGACATCAGAGACAAGGACATGAAAAATTCCAAAGGCT
GCATTGCCACGTTTGCTGGACACTCTGGTGATATTCATGCACTGTGTTTT
GCCAATGGTTATGTGTTCAGTGCCAGTACGGATAAATCGTTAAAAGTATG
GAGTGTGGAAACGTTTCAACTACATAATTCTGTTGAAGATGCACATTCAG
ATATCATTGGAGCCCTTGCTTCAACTGGGCGTTACATTTTTAGTGGATCA
TACTCTTCAATAAAGATATGGCGCGCCTCAGACTTAAAGTTGATGCATAC
AATATCAGACACTGGGCATTGGATCAGAGCGTTTGCAGTTGGACCAAACA
GGGACAAGGTGTACAGTGGATCACACAATGCAGTTAATGTGTGGGAGACA
GAAGAACCATTCCGTTCCGCTGGCACACTCACTCATTCGCATGGTTCAGT
GTACTCGCTTGCTGCGACCAAAGAATATCTGATATTAGGAACCTACAATC
AGAATTCACATTTGTACGACATTAACACACTGGAGTATGTTAAAGTACTG
ACAGGTCATCTTGGTATCATCAACTCCTTATTACCATCGCCAAGCGGAAG
ATTCTTGTTTACAGGATCTCATGACCACACCGTACAGCTTTGGGATATGA
TGAAGCTTTTGCCAATTCAAGTGTTAAGCCGTCATGAAGGAAGTGTAAAT
TGTATGGCATTGTCTGGTGATATGATTTTCACTGGTTCAGAAGATAAAGA
AATCAAGGTGTACATGTACTACCAAGGGTTGGCATCAAAGAACTTGATGG
TTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038629XLOC_038629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061564-exon-scaffold_36-1491911889:525051..525200TCONS_00061564-exon-scaffold_36-1491911889:525051..525200Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:525051..525200TCONS_00061564-exon-scaffold_36-1510915933:525051..525200Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:525051..525200TCONS_00061564-exon-scaffold_36-1575043694:525051..525200Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:525403..525507TCONS_00061564-exon-scaffold_36-1491911889:525403..525507Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:525403..525507TCONS_00061564-exon-scaffold_36-1510915933:525403..525507Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:525403..525507TCONS_00061564-exon-scaffold_36-1575043694:525403..525507Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:525636..525713TCONS_00061564-exon-scaffold_36-1491911889:525636..525713Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:525636..525713TCONS_00061564-exon-scaffold_36-1510915933:525636..525713Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:525636..525713TCONS_00061564-exon-scaffold_36-1575043694:525636..525713Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:525948..526034TCONS_00061564-exon-scaffold_36-1491911889:525948..526034Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:525948..526034TCONS_00061564-exon-scaffold_36-1510915933:525948..526034Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:525948..526034TCONS_00061564-exon-scaffold_36-1575043694:525948..526034Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:526263..526398TCONS_00061564-exon-scaffold_36-1491911889:526263..526398Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:526263..526398TCONS_00061564-exon-scaffold_36-1510915933:526263..526398Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:526263..526398TCONS_00061564-exon-scaffold_36-1575043694:526263..526398Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:526569..526717TCONS_00061564-exon-scaffold_36-1491911889:526569..526717Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:526569..526717TCONS_00061564-exon-scaffold_36-1510915933:526569..526717Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:526569..526717TCONS_00061564-exon-scaffold_36-1575043694:526569..526717Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:527041..527160TCONS_00061564-exon-scaffold_36-1491911889:527041..527160Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:527041..527160TCONS_00061564-exon-scaffold_36-1510915933:527041..527160Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:527041..527160TCONS_00061564-exon-scaffold_36-1575043694:527041..527160Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1491911889:527435..527893TCONS_00061564-exon-scaffold_36-1491911889:527435..527893Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1510915933:527435..527893TCONS_00061564-exon-scaffold_36-1510915933:527435..527893Clytia hemisphaericaexon
TCONS_00061564-exon-scaffold_36-1575043694:527435..527893TCONS_00061564-exon-scaffold_36-1575043694:527435..527893Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061564-proteinTCONS_00061564-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:525051..527893 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68313	1.31949	1.79362	1.97413	3.78299	2.00464	1.35776	1.46973	0.528402	0.447823	0.568412	0.395631	0.395081	0.159559	0.243619	0.542992	0.421173	0.507869	0.14033	0.440535	0.638175	0.373535	0.529761	0.688042	1.09843	1.0752	0.407277	0.193181	0.402933	0.597127
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00061564 vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.066e-45
Identity = 90/267 (33.71%), Postives = 151/267 (56.55%), Query Frame = 1 
Query:   43 VFSGAADHSIKVWDIRDKDMKNSKGCIATFAGHSGDIHALCFANGYVFSASTDKSLKVWSVETFQLHNSVEDAHSDIIGALASTGRYIFSGSYSSIKIWR--ASDLKLMHTISDTGHWIRAFAVGPNRDKVYSGSHNAVNVWETEEPFRSAGTLTHSHGSVYSLAATKEYLILGTYNQNSHLYDINTLEYVKVLTGHLGIINSL--LPSPSGRFLFTGSHDHTVQLWDMMKLLPIQVLSRHEGSVNCMALSGDMIFTGSEDKEIKVY 831
            +FSG++D +IKVWD        +  C  T  GH G + ALC     ++S S D ++ VW ++  Q  N++  AH + +  L S+   +FSGS  +IK+W    ++LKL   ++   HW+RA      +  +YSGS+  + +W+          L  S GSVYS+A T  +++ GTY    H++DI + E V+ LTGH+G + +L  + +P    +F+ S+D ++++W M  ++  Q L RH+GSV  +A+S   +F+G+ D  +KV+
Sbjct:  411 LFSGSSDKTIKVWD-----TCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIR-AHDNPVCTLVSSHNVLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAA--QSYLYSGSYQTIKIWDIRT-LDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW 668
The following BLAST results are available for this feature:
BLAST of TCONS_00061564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF72.066e-4533.71E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
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