TCONS_00061566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061566
Unique NameTCONS_00061566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061566 ID=TCONS_00061566|Name=TCONS_00061566|organism=Clytia hemisphaerica|type=transcript|length=2683bp
TGCCCACTTCCCAATTTCAAACAAGTGTTACATTGTGCTTTCTCGTGTAT
GATGgtagataacaaaaaataaatcaagatGCCTTCAAAGCCAATCAGTG
TTCGCGTCACCACTATGGACGCCGAACTGGAGTTTGCCATCCAACCCAGT
ACCTCTGGTAAACAACTCTTCGATCAAGTCGTCAAAACTATTGGTTTGAG
AGAAATCTGGTTTTTCGGTCTGCAATATGTCGATACAAAAGGTGATACAA
CGTGgttaaaattaaacaaaaaagtgacgtcacaagaTATCAAAAAGGAA
ACACCATaccaatttaaattccgctCCAAATTTTTCCCTGAAGATGTCGC
AAATGAATTAATTCAAGAAGTCACACGAAAACTTATTTATTACCAAGTTA
AAGACTCTATACTAACTGAAGAGGTGTACTGTCCGCCTGAAACTTCAGTT
CTTTTATCCTCGTACGCTATGCAAGTCAAATATGGAGATTATAAACCTGA
AACACACACCCAAGGATTTTTATCGAAGGATCGTTTATTGCCACAAAGAG
TATTGAACCAGCACAAAATGAGCCATTCTCAATGGGAAGAACGTATTGTC
AACTGGTGGGCTGAACACAAAGAAATGCTCAGGGACGATGCTGTACTTGA
ATACCTCAAAATCGCACAAGATTTGGAAATGTACGGAGTCAATTATTTCg
aaatcaaaaacaagaaaGGAACCAAACTATTCCTTGGCGTTGACGCATTG
GGATTGAATATTTACGAACAAAGTGACAAATTGACTCCCAAAATTGGTTT
CCCATGGAGTGAAATCCGTAACATTTCTTTCAACGATAAAAAATTCGTTA
TCAAACCCATTGATAAGAAGGCGCCTgAATTTGTATTTTACGTCGACCGA
TTACGAATCAATAAGCGAATCTTGTCGTTGAGCATGGGTAATCACGAATT
ATACATGAGACGACGAAAACCCGACACCATCGAAGTCCAACAGATGAAAG
CACAAGCACGCGAAGAGAAATTGGCTAAACAACAAGAAAGAGCTCGATTG
ACGCGCGAGAAACAGGCCCGTGAAGATGCCGAACGTGAAAAGCTCGAAAT
GGCCGATCGTCTGAGAAAATTCGAAGAGGAAGCTAAAGTCGCTCAACAAG
CGCTTGACCAAGCTAAAGAGGACGCCATCCGAAAAGAGGGATTAAGAAAA
AGAGCTGAGGAAGAGGCTGCCCGTCTTGAAGAATTGAAGAGACAAGCTGA
AATCGAACGACAGAAATTGGAAGAGGAAGCGGCCTCTCAGAGAATCGCTA
AAGAAGAATACGAACAACGCGCCGCAGCCGCCGCCGAAGAAGCTGAACGC
CGCGCGGTCGAGATCGAAGAGAAGCAAAGAGAAGCAGAGAGATTACAACA
AGAATTGGCTGAATCTCAACGTCGTGAAGATGAACAGAAACAGGAATTAT
TGAAGATCATTTCGACACCACCTACCATCATGGTACAAACAGATGAGGCT
GAAGAAACCTCCAATGAACACGGTGCTGATCTGGAAGAAGCTGAAATGGA
CAATCGTGAATTGGAATACACTTCGGAACAAGACAAGAATGAACGGCTCA
AGAACCAATTGGCTAGCCTGAGTGACGAATTGAATCAAGCTCGTGATTCA
GCTCAATTAACACATGAAGATTTGTTGCACGAAGGGAACTTGAAAGAAGG
TCGTGATAAATACAAAACACTTCGACAAATCCGACAAGGAAACACAAGAC
AACGTATTGATGAATTCGAATCTTTGTAAAAGAAAATGAACACGAAcgaa
tgtttcaaaatttttggaaccTTTTTTACAGTTGCAgaatgaatttattt
aaaacGAAAACCCAAGAATtatttccatcgaaaacaaaacaacatgAACA
CATGAACATTTctgaaattaaaaagattttatattAAAAGTATTAAGAAA
AAAAAGTCTAGTATTGATTATTTTGGGACTAATATAGAACAAAAACAGGG
ACAATGGTTATGGCATTGGCCTTTTTGTGCAAGTTTGTTAGAAATTATTT
TGActtataattttcaattttcattttattttgaaaattcgtttTCGCTC
AAGGAAAAATCTGACAGGTTCCGATTTGAAGAACTAGAGgaaataacttt
attttttcttctatcTCAGTATgaatttgatttgatattgagATTCGATC
AAGAATTTTCCTCATCTTGGAACTTTCCTCATCttggaactttaaatctt
tttcactgaaattttttaagtgattttttaaacgtgagccaattttcatt
tttgtgctgatttttaattcatttttttgtttattttctcatCAACAATC
ATAAGTATTACGTTTTGTTTAGCAGTTCTTTTTCATCAGATTTATATTAC
TACTACATAGTTAGTATTTGATTACTTTTAACTTACTTTCGAGATAACTA
TACCTTTTTCTGCTCCAACAAATCAAGTGAACTCCGTTTTGTGTGCAGTC
ATTGTCTTTTCAATTATTTCATATTCTGAAAGAGCTGtgggtttttttct
ttctcttccaAACCTAATTCTCAAGATCTCCCGATTTCTTGTACGTAGAA
TTTAACAGAAATTTTTAAGATATATTTTCAcctttctaataaaaaaattt
tcttttcatttttagttagatttatttcttttt
Run BLAST on NCBI

protein sequence of TCONS_00061566-protein

>TCONS_00061566-protein ID=TCONS_00061566-protein|Name=TCONS_00061566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
MPSKPISVRVTTMDAELEFAIQPSTSGKQLFDQVVKTIGLREIWFFGLQY
VDTKGDTTWLKLNKKVTSQDIKKETPYQFKFRSKFFPEDVANELIQEVTR
KLIYYQVKDSILTEEVYCPPETSVLLSSYAMQVKYGDYKPETHTQGFLSK
DRLLPQRVLNQHKMSHSQWEERIVNWWAEHKEMLRDDAVLEYLKIAQDLE
MYGVNYFEIKNKKGTKLFLGVDALGLNIYEQSDKLTPKIGFPWSEIRNIS
FNDKKFVIKPIDKKAPEFVFYVDRLRINKRILSLSMGNHELYMRRRKPDT
IEVQQMKAQAREEKLAKQQERARLTREKQAREDAEREKLEMADRLRKFEE
EAKVAQQALDQAKEDAIRKEGLRKRAEEEAARLEELKRQAEIERQKLEEE
AASQRIAKEEYEQRAAAAAEEAERRAVEIEEKQREAERLQQELAESQRRE
DEQKQELLKIISTPPTIMVQTDEAEETSNEHGADLEEAEMDNRELEYTSE
QDKNERLKNQLASLSDELNQARDSAQLTHEDLLHEGNLKEGRDKYKTLRQ
IRQGNTRQRIDEFESL
Run BLAST on NCBI

transcript from alignment at scaffold_36:579070..590689+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061566 ID=TCONS_00061566|Name=TCONS_00061566|organism=Clytia hemisphaerica|type=transcript|length=11620bp|location=Sequence derived from alignment at scaffold_36:579070..590689+ (Clytia hemisphaerica)
TGCCCACTTCCCAATTTCAAACAAGTGTTACATTGTGCTTTCTCGTGTAT
GATGGTAGGTTTTGTAATCCTTGAAACTAATGATGAATAAAGTAGACCTC
TGAAACTCCTCTTTTTGTAGTTGACATCAATTATCgatctattttttata
tttttatggtCGTCTTCTTTTGCTTTTCTCTATAATTTTGCTTCATCATA
TAATAGCTATATTTATACATTAAGGTATAGTTAGCCTTACTAGTTTTGAG
TAGTGTCAAATATATTGAACTTAAATACGTTTTCCTAGCTATCAGTTAGC
TGACAAGTGATATGAATTAAAGTTGAGCAAGTCAAATTTTCCAACCTTTC
AGACTGGGTACAGGGTTTGTTTGGTTTTAAATAATACTCCTGTAGGCAAG
TGCGAAAGTCTATTGCATTCTAATTACTGCAGATGAAATTATGATACCTC
CATACTTAAGTTGATGCAAGTAAAACCAGCAAGAAATTActgtcagtcag
gcacatcctggcaattgaacggggtgagcatttgcatggggtattcgtca
cccagtgtaaatgagataggacgtctcaggatAAAAGCGTGAAAATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttccccattgtattaga
gaaatctatttttttttttgtaaggggttatcctgctgtgttgcagcgaa
aatatattcaattcaattcaattcaattcaattaaactgggtatccggcg
ctattacgtcactttcgttttcgaccccgttcatttgccaatggtcgcaa
gtgaaaaataccccgttcatttgccaatggtcgcaagtgaaaaatacccc
gttcatttgccaggatgtgcctgactgactgTAATTTACCGTAACTTgat
ggtctaatgttgacatccctcatatctataattccgacaccctttttatc
tgTTATTGAAAGAAAggtcaaaactattttttttttcaatcagtgattca
aactttcatattattgcTGTCTCTtaagaagggtgtcaaaattaaacgag
ggatgttgatattagaccaaACGCTACCGTAAGTAAGTTGGTCttatgtc
gacatccgtcttctaatttcgacatccttcttataggaataataagaagg
tcgagatcactgatagactaaagatttgtcctctcatcgcgctaatcaaa
gtcaatcagcgattccgaccctcctcagtttctattgttcctatctctaa
agaagggtgtcgaaattagaatggCACGCTAACACTGTCCCAAATTAGCA
CGTTATAACGATGCGAAGCTTCCTGTGCGACATGTTATGAAGCATTTGGG
TTTTATTTCCGTAATACATACAGAGCAGAATATTTCCATCCGGAATGGCT
GGAgtaatagttgttttggagatcGCGACAGCCTATTgaataccgtgaag
tcgggtaacttgcatcagtggagggaaacttgcatacaactcaaatgaat
gacctgtctggtcatgaaaataaaagttaaatcaaaacaaaatggtagag
tcGAGCTGCGAGCGGAACCGCGTagttcatttgatttgaaattttattgg
ttgCTTTGATtagtcagtcatttgatggctatgcaagtttcccttcactg
atgcaaagttacctgacttcacagtaacaaattactccacatatATGTAA
TGTATATAATGCCAATAAAAACGTGATAAATTATcctgtctctaggtaac
tgctatagagtaattagttattcaataggcAGTTgcattctccaaaacaa
ctatttaataccgtcaactgctctaacttgggacgattggtcgaaacatg
ggactgttatATCTGGCTTGTATTTTCACtgactgttaaatctctttgac
aacaaatttgttttgataactccaccaagtttatcaatcatactttctgt
cataacatttcacgataactttcacttaATTTTTATCTCACTGTGTTTCT
AATAGCTAAGTCTATGCACGCCAAGCTTAAAAGCACACATACAAATAAAT
ATTaggttaaaagttaaaaattatcaaatagCCTAGCGATTGTACTTTTT
AGCCTAGTGCGCAGACACTGGTATAGCAAATAAAATAGATGAAAATTAAG
TGCGAAAGTAGATCTACTACAGTATGGAggcattacgtaatgttttcacT
ACTGGAGTCAAAATAGTATCGCACCTAGCCTAAGGTTTGTTGGAACACTA
TCTTACATTAGTGGCACTTGGGGCTAAGAATAGACCTTTACGTGAATGTG
ACAGTCTATTTAATAACAAATAACTAGAACATAATATTTTGCCCTCAGGA
AGTAGCCACAAATAGGCACAATTATTCCAGCTCAAGGCAgcagctgttct
tatttttaaggCAAATCAATTAGATAATGTTATCATTTAAAAAGATTATG
CTATGCTAGTTATTCTGTAGCATTTTGTGATCTCCTAAACAACTTAAGAG
GCTTCCTGGGCCATCTCTATCTTTCTTAGTAAGGGATACATATCAGAAGA
GTGGTTTTTCCGTGCTTCGACAAAAGTGAGTTGCTATTCTATGCAACACT
TCCAATTGAAGCTTCTTGTAATCTGAAATCATGAACCCCTGGCAATATCA
CTTAATGCCTTGCGGGGGGAGAGctatctatttttctttgtttgctttgt
aAGTAGTATTATGTTCATAAGTGTAATGTAGTTTCTCAAAtcatatagaa
aaaaaaatcatgagCAACAAGAccaattcttttgaaaagacAAGCAAAAT
TAGGCAAAATCTCATATTTTTGAACAAAGTAGTCTTACTGCTAAGAATGA
TTGTTAAAAATCCCTtggtagaaaattaaaaaagttaacttTTGTATAAT
AGATAGCCTCTACCTTCTCTTTTTTAGTTTGTAAGTGGAGACATCATAGA
ATCATGTTGAAAACATTCCTGAACTATCAAGGCTTAAATTTggttatttt
tgtaatttttagggGGTATAATCAGCTGTAAAATGCcataaaaaccaaaa
tataaaattaataaTGATTTTCAATGTTTGAACTTTTACAAAGAGTTTAA
TTAATATTCTATTTAAAAGACTGTCAAAGTCATTCTGGTTTTTAGAAGCC
TTATCATGCAGTCAAGTTGAATGTTTGACTAATCCTACGGCCAAACAAAG
GATGGTTGGGCGATATCTTTGTTGTCTGTGTAGAACATATCGGTCACTGT
GTTCCGACAACAATCTGCCCATCACATCAATAAGTTGTCCCTCAGGAGGA
CTTTCTCTACTAGGGAGTTCCAGATATCTacttaaaaatttgttgttcgc
TACAAACCTGTCATTGAGTTTAAATAACCATCGGCATGAATGTCGAAGAA
CGCTATGGATATTTGAATGAACCCACTTAAATTCCCTAAAACAAAGGAGA
TATTATGAATTACTTTAGTATTTATTGGTTAAGAATAATTATTTAGTTAA
TTGCTTTTCATTTTAACTTTTGCTTTAACTCACTCATGAAGCAAAATCAA
TATAGTAATTAATCTCCTATCAGGCTATGATAGTTAAGGTCTCCTAATGT
AACATCAATCAGAAAGATGctcttaaataaaaaaactccTGATCTTCTTT
TGTCAATAAAGAGCAAAAATGGAAGGTTACAAAAAACTTACCCCAAAACT
TCACATCTTTTACATCCTTAAAATACATCCTTTAGACTGCATTTTGGAAA
GACGAAACACCCACACTACAAGTCCCTAAATTAGATGTTGACCCCCAAAA
GCTTTTGGATCGTTATTCATCAGAATGACAAGAATTGGAAGCAAACaaaa
gtgaagatgaaaatttgggctaaaagatttcaaaatatccATTTTGATCA
GGTCTACAAACAACGGctggtaattaccggtcatttcGTAGTTTCTACCA
GTCATTCTGGAGCTTACTTTTCACTTTGTCCAGTTAAAATTTGAAGGCTA
TAATAGGTTTATTCTGGTTTATAGGCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAGGggggta
gcatcaaattttaaaagggggaagaacctagggtaggggggtagctctag
ggtagggggggtagtgacccccttccgaactatgTCATACATACTTACCA
AATCATAATTATAAGAACTGGTTTAAAAAGTTTGTTCTTTCACAACCTTG
CCTTGAGATGTTATCATCCCAAAATTTCTAGACCAGACCTCATGCTCAAA
CCGTACCGTTACATTGGCAAAACtacaaaaaatttcttatttacaGCACT
GTTGATTAATACAGATTAACAGTTTCCAGGCTGAGAGCATCTATCAAAAT
AGTTCATTACCATCATGACCtcatgaataggtaacccctaATACAAGTCT
CGGCCAAGTGACTTCTGGCCCTGACTTCAGAAATCTGGCGCTGAAACTAA
GTGCTCTTACCAATAATTATCAAATATAAATCTATGAGttccttttttct
ttcactaggtagataacaaaaaataaatcaagatGCCTTCAAAGCCAATC
AGTGTTCGCGTCACCACTATGGACGCCGAACTGGAGTTTGCCATCCAACC
CAGTACCTCTGGTAAACAACTCTTCGATCAAGTCGTCAAAACTATTGGTT
TGAGAGAAATCTGGTTTTTCGGTCTGCAATATGTCGATACAAAAGGTGAT
ACAACGTGgttaaaattaaacaaaaaagtgacgtcacaagaTATCAAAAA
GGAAACACCATaccaatttaaattccgctCCAAATTTTTCCCTGAAGATG
TCGCAAATGAATTAATTCAAGAAGTCACACGAAAACTTATTTATTACCAA
GTTAAAGACTCTATACTAACTGAAGAGGTGTACTGTCCGCCTGAAACTTC
AGTTCTTTTATCCTCGTACGCTATGCAAGTCAAATATGGAGATTATAAAC
CTGAAACACACACCCAAGGATTTTTATCGAAGGATCGTTTATTGCCACAA
AGAGTATTGAACCAGCACAAAATGAGCCATTCTCAATGGGAAGAACGTAT
TGTCAACTGGTGGGCTGAACACAAAGAAATGCTCAGGTACATTGATTGAT
TGACTGATTGATCGATTTActgaattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
gagCTGATTCGTGAGTACTGTCCAAAAATAATTCACACAATAACCTGCAA
CAGCTGAAACTTTATTCTAAATTCGAcactcatcaattttattttttctg
aatGAGTTTGTCGAATTGTCATATAAAATTTATAATCTGTTATAGTTTGC
ATTCCAACTTTtctttctcatcaaaatacttGATTTTCAGGGACGATGCT
GTACTTGAATACCTCAAAATCGCACAAGATTTGGAAATGTACGGAGTCAA
TTATTTCgaaatcaaaaacaagaaaGGAACCAAACTATTCCTTGGCGTTG
ACGCATTGGGATTGAATATTTACGAACAAAGTGACAAATTGACTCCCAAA
ATTGGTTTCCCATGGAGTGAAATCCGTAACATTTCTTTCAACGATAAAAA
ATTCGTTATCAAACCCATTGATAAGAAGGCGCCTGTAAGTTTTACTGTAT
TTCCTTTTGAAGTTAGgtatacaaaattttgaaaatctttgatttcgtCT
GAAATGAAAATTCGAACACTCAAAGTTATCAGCTCTTAATTTTACAgcgt
ctttaaaaaaataactaCTGAAACATGGGGGCACGTTCTCCGGtgtcact
ttttttgcattttagttCATCTAACAACTCTTGAAAAAGTTTCTGGTTGA
TTTCTAACAAATTGCGTGGATCAGTCAGAAAACTGCCAATTAATAGGTAT
AGCGACTTCAAATtcaatatatgttttattaggAATTTGTATTTTACGTC
GACCGATTACGAATCAATAAGCGAATCTTGTCGTTGAGCATGGGTAATCA
CGAATTATACATGAGACGACGAAAACCCGACACCATCGAAGTCCAACAGA
TGAAAGCACAAGCACGCGAAGAGAAATTGGCTAAACAACAAGAAAGAGCT
CGATTGACGCGCGAGAAACAGGCCCGTGAAGATGCCGAACGTGAAAAGCT
CGAAATGGCCGATCGTCTGAGAAAATTCGAAGAGGAAGCTAAAGTCGCTC
AACAAGCGCTTGACCAAGCTAAAGAGGACGCCATCCGAAAAGAGGGATTA
AGAAAAAGAGCTGAGGAAGAGGCTGCCCGTCTTGAAGAATTGAAGAGACA
AGCTGAAATCGAACGACAGAAATTGGAAGAGGAAGCGGCCTCTCAGAGAA
TCGCTAAAGAAGAATACGAACAACGCGCCGCAGCCGCCGCCGAAGAAGCT
GAACGCCGCGCGGTCGAGATCGAAGAGAAGCAAAGAGAAGCAGAGAGATT
ACAACAAGAATTGGCTGAATCTCAACGTCGTGAAGATGAACAGAAACAGG
TAAGGGAACAAAAAGTCTTTTATTTTAGTCTTGCCCTATTCTTTACCGTC
AACCTGTTTGGGAAGATCTTTGTTTGTCACCGCATTCTGCAAGtctattt
tttgagaaagagtTGATATAAGAAgttttgatcaatttttgaaaatttct
tgtcGTCAATGTTTtagttgttgttttttaattctAAGCAAGCTTTCTTT
TACTTTCCATCCTTGCGTAGGAATTATTGAAGATCATTTCGACACCACCT
ACCATCATGGTACAAACAGATGAGGCTGAAGAAACCTCCAATGAACACGG
TGCTGATCTGGAAGAAGCTGAAATGGACAATCGTGAATTGGAATACACTT
CGGAACAAGACAAGAATGAACGGCTCAAGAACCAATTGGCTGTAAGTGAT
GTtgtttgtcaatatattttgcGTGTTTGCTTTTCCCTGTCTCAAAGCAG
TGCCACAGCGCGCAATGCATTATTCATGAAGCAATTAATTCTATGGAAAT
GCCCGGGGTTTTGGCAGTAGTGGCAAATTGAAGCTGTAGAAAAATTGTTT
AGAATTTGACATTACTGAATCAGAGTTCACCACCAGGAACTTAATGGTTC
CTCAGAAAAACTCTAATATAAGGCTTAATTTTCCGAGTATTTTATCTGGA
TTTTCGACTTCAACATTTTTCCATACATATGTCGGCAGTCATATTAATCT
GAAGCGAATTTTCCTGCGTCTTCTAACCTGCAAACTTTAACTGTTGACTG
AAGGTTCCTGACCATCAATGTTTATTCGTTATTGCTTTATTATCTTTACA
GAGCCTGAGTGACGAATTGAATCAAGCTCGTGATTCAGCTCAATTAACAC
ATGAAGATTTGTTGCACGAAGGGAACTTGAAAGAAGGTCGTGATAAATAC
AAAACACTTCGACAAATCCGACAAGGAAACACAAGACAACGTATTGATGA
ATTCGAATCTTTGTAAAAGAAAATGAACACGAAcgaatgtttcaaaattt
ttggaaccTTTTTTACAGTTGCAgaatgaatttatttaaaacGAAAACCC
AAGAATtatttccatcgaaaacaaaacaacatgAACACATGAACATTTct
gaaattaaaaagattttatattAAAAGTATTAAGAAAAAAAAGTCTAGTA
TTGATTATTTTGGGACTAATATAGAACAAAAACAGGGACAATGGTTATGG
CATTGGCCTTTTTGTGCAAGTTTGTTAGAAATTATTTTGActtataattt
tcaattttcattttattttgaaaattcgtttTCGCTCAAGGAAAAATCTG
ACAGGTTCCGATTTGAAGAACTAGAGgaaataactttattttttcttcta
tcTCAGTATgaatttgatttgatattgagATTCGATCAAGAATTTTCCTC
ATCTTGGAACTTTCCTCATCttggaactttaaatctttttcactgaaatt
ttttaagtgattttttaaacgtgagccaattttcatttttgtgctgattt
ttaattcatttttttgtttattttctcatCAACAATCATAAGTATTACGT
TTTGTTTAGCAGTTCTTTTTCATCAGATTTATATTACTACTACATAGTTA
GTATTTGATTACTTTTAACTTACTTTCGAGATAACTATACCTTTTTCTGC
TCCAACAAATCAAGTGAACTCCGTTTTGTGTGCAGTCATTGTCTTTTCAA
TTATTTCATATTCTGAAAGAGCTGtgggtttttttctttctcttccaAAC
CTAATTCTCAAGATCTCCCGATTTCTTGTACGTAGAATTTAACAGAAATT
TTTAAGATATATTTTCAcctttctaataaaaaaattttcttttcattttt
agttagatttatttcttttt

Coding sequence (CDS) from alignment at scaffold_36:579070..590689+

>TCONS_00061566 ID=TCONS_00061566|Name=TCONS_00061566|organism=Clytia hemisphaerica|type=CDS|length=8505bp|location=Sequence derived from alignment at scaffold_36:579070..590689+ (Clytia hemisphaerica)
atGCCTTCAAAGCCAATCAGTGTTCGCGTCACCACTATGGACGCCGAACT
GGAGTTTGCCATCCAACCCAGTACCTCTGGTAAACAACTCTTCGATCAAG
TCGTCAAAACTATTGGTTTGAGAGAAATCTGGTTTTTCGGTCTGCAATAT
GTCGATACAAAAGGTGATACAACGTGgttaaaattaaacaaaaaagtgac
gtcacaagaTATCAAAAAGGAAACACCATaccaatttaaattccgctCCA
AATTTTTCCCTGAAGATGTCGCAAATGAATTAATTCAAGAAGTCACACGA
AAACTTATTTATTACCAAGTTAAAGACTCTATACTAACTGAAGAGGTGTA
CTGTCCGCCTGAAACTTCAGTTCTTTTATCCTCGTACGCTATGCAAGTCA
AATATGGAGATTATAAACCTGAAACACACACCCAAGGATTTTTATCGAAG
GATCGTTTATTGCCACAAAGAGTATTGAACCAGCACAAAATGAGCCATTC
TCAATGGGAAGAACGTATTGTCAACTGGTGGGCTGAACACAAAGAAATGC
TCAGGGACGATGCTGTACTTGAATACCTCAAAATCGCACAAGATTTGGAA
ATGTACGGAGTCAATTATTTCgaaatcaaaaacaagaaaGGAACCAAACT
ATTCCTTGGCGTTGACGCATTGGGATTGAATATTTACGAACAAAGTGACA
AATTGACTCCCAAAATTGGTTTCCCATGGAGTGAAATCCGTAACATTTCT
TTCAACGATAAAAAATTCGTTATCAAACCCATTGATAAGAAGGCGCCTgA
ATTTGTATTTTACGTCGACCGATTACGAATCAATAAGCGAATCTTGTCGT
TGAGCATGGGTAATCACGAATTATACATGAGACGACGAAAACCCGACACC
ATCGAAGTCCAACAGATGAAAGCACAAGCACGCGAAGAGAAATTGGCTAA
ACAACAAGAAAGAGCTCGATTGACGCGCGAGAAACAGGCCCGTGAAGATG
CCGAACGTGAAAAGCTCGAAATGGCCGATCGTCTGAGAAAATTCGAAGAG
GAAGCTAAAGTCGCTCAACAAGCGCTTGACCAAGCTAAAGAGGACGCCAT
CCGAAAAGAGGGATTAAGAAAAAGAGCTGAGGAAGAGGCTGCCCGTCTTG
AAGAATTGAAGAGACAAGCTGAAATCGAACGACAGAAATTGGAAGAGGAA
GCGGCCTCTCAGAGAATCGCTAAAGAAGAATACGAACAACGCGCCGCAGC
CGCCGCCGAAGAAGCTGAACGCCGCGCGGTCGAGATCGAAGAGAAGCAAA
GAGAAGCAGAGAGATTACAACAAGAATTGGCTGAATCTCAACGTCGTGAA
GATGAACAGAAACAGGAATTATTGAAGATCATTTCGACACCACCTACCAT
CATGGTACAAACAGATGAGGCTGAAGAAACCTCCAATGAACACGGTGCTG
ATCTGGAAGAAGCTGAAATGGACAATCGTGAATTGGAATACACTTCGGAA
CAAGACAAGAATGAACGGCTCAAGAACCAATTGGCTAGCCTGAGTGACGA
ATTGAATCAAGCTCGTGATTCAGCTCAATTAACACATGAAGATTTGTTGC
ACGAAGGGAACTTGAAAGAAGGTCGTGATAAATACAAAACACTTCGACAA
ATCCGACAAGGAAACACAAGACAACGTATTGATGAATTCGAATCTTTGTA
AatGCCTTCAAAGCCAATCAGTGTTCGCGTCACCACTATGGACGCCGAAC
TGGAGTTTGCCATCCAACCCAGTACCTCTGGTAAACAACTCTTCGATCAA
GTCGTCAAAACTATTGGTTTGAGAGAAATCTGGTTTTTCGGTCTGCAATA
TGTCGATACAAAAGGTGATACAACGTGgttaaaattaaacaaaaaagtga
cgtcacaagaTATCAAAAAGGAAACACCATaccaatttaaattccgctCC
AAATTTTTCCCTGAAGATGTCGCAAATGAATTAATTCAAGAAGTCACACG
AAAACTTATTTATTACCAAGTTAAAGACTCTATACTAACTGAAGAGGTGT
ACTGTCCGCCTGAAACTTCAGTTCTTTTATCCTCGTACGCTATGCAAGTC
AAATATGGAGATTATAAACCTGAAACACACACCCAAGGATTTTTATCGAA
GGATCGTTTATTGCCACAAAGAGTATTGAACCAGCACAAAATGAGCCATT
CTCAATGGGAAGAACGTATTGTCAACTGGTGGGCTGAACACAAAGAAATG
CTCAGGGACGATGCTGTACTTGAATACCTCAAAATCGCACAAGATTTGGA
AATGTACGGAGTCAATTATTTCgaaatcaaaaacaagaaaGGAACCAAAC
TATTCCTTGGCGTTGACGCATTGGGATTGAATATTTACGAACAAAGTGAC
AAATTGACTCCCAAAATTGGTTTCCCATGGAGTGAAATCCGTAACATTTC
TTTCAACGATAAAAAATTCGTTATCAAACCCATTGATAAGAAGGCGCCTg
AATTTGTATTTTACGTCGACCGATTACGAATCAATAAGCGAATCTTGTCG
TTGAGCATGGGTAATCACGAATTATACATGAGACGACGAAAACCCGACAC
CATCGAAGTCCAACAGATGAAAGCACAAGCACGCGAAGAGAAATTGGCTA
AACAACAAGAAAGAGCTCGATTGACGCGCGAGAAACAGGCCCGTGAAGAT
GCCGAACGTGAAAAGCTCGAAATGGCCGATCGTCTGAGAAAATTCGAAGA
GGAAGCTAAAGTCGCTCAACAAGCGCTTGACCAAGCTAAAGAGGACGCCA
TCCGAAAAGAGGGATTAAGAAAAAGAGCTGAGGAAGAGGCTGCCCGTCTT
GAAGAATTGAAGAGACAAGCTGAAATCGAACGACAGAAATTGGAAGAGGA
AGCGGCCTCTCAGAGAATCGCTAAAGAAGAATACGAACAACGCGCCGCAG
CCGCCGCCGAAGAAGCTGAACGCCGCGCGGTCGAGATCGAAGAGAAGCAA
AGAGAAGCAGAGAGATTACAACAAGAATTGGCTGAATCTCAACGTCGTGA
AGATGAACAGAAACAGGAATTATTGAAGATCATTTCGACACCACCTACCA
TCATGGTACAAACAGATGAGGCTGAAGAAACCTCCAATGAACACGGTGCT
GATCTGGAAGAAGCTGAAATGGACAATCGTGAATTGGAATACACTTCGGA
ACAAGACAAGAATGAACGGCTCAAGAACCAATTGGCTAGCCTGAGTGACG
AATTGAATCAAGCTCGTGATTCAGCTCAATTAACACATGAAGATTTGTTG
CACGAAGGGAACTTGAAAGAAGGTCGTGATAAATACAAAACACTTCGACA
AATCCGACAAGGAAACACAAGACAACGTATTGATGAATTCGAATCTTTGT
AAatGCCTTCAAAGCCAATCAGTGTTCGCGTCACCACTATGGACGCCGAA
CTGGAGTTTGCCATCCAACCCAGTACCTCTGGTAAACAACTCTTCGATCA
AGTCGTCAAAACTATTGGTTTGAGAGAAATCTGGTTTTTCGGTCTGCAAT
ATGTCGATACAAAAGGTGATACAACGTGgttaaaattaaacaaaaaagtg
acgtcacaagaTATCAAAAAGGAAACACCATaccaatttaaattccgctC
CAAATTTTTCCCTGAAGATGTCGCAAATGAATTAATTCAAGAAGTCACAC
GAAAACTTATTTATTACCAAGTTAAAGACTCTATACTAACTGAAGAGGTG
TACTGTCCGCCTGAAACTTCAGTTCTTTTATCCTCGTACGCTATGCAAGT
CAAATATGGAGATTATAAACCTGAAACACACACCCAAGGATTTTTATCGA
AGGATCGTTTATTGCCACAAAGAGTATTGAACCAGCACAAAATGAGCCAT
TCTCAATGGGAAGAACGTATTGTCAACTGGTGGGCTGAACACAAAGAAAT
GCTCAGGGACGATGCTGTACTTGAATACCTCAAAATCGCACAAGATTTGG
AAATGTACGGAGTCAATTATTTCgaaatcaaaaacaagaaaGGAACCAAA
CTATTCCTTGGCGTTGACGCATTGGGATTGAATATTTACGAACAAAGTGA
CAAATTGACTCCCAAAATTGGTTTCCCATGGAGTGAAATCCGTAACATTT
CTTTCAACGATAAAAAATTCGTTATCAAACCCATTGATAAGAAGGCGCCT
gAATTTGTATTTTACGTCGACCGATTACGAATCAATAAGCGAATCTTGTC
GTTGAGCATGGGTAATCACGAATTATACATGAGACGACGAAAACCCGACA
CCATCGAAGTCCAACAGATGAAAGCACAAGCACGCGAAGAGAAATTGGCT
AAACAACAAGAAAGAGCTCGATTGACGCGCGAGAAACAGGCCCGTGAAGA
TGCCGAACGTGAAAAGCTCGAAATGGCCGATCGTCTGAGAAAATTCGAAG
AGGAAGCTAAAGTCGCTCAACAAGCGCTTGACCAAGCTAAAGAGGACGCC
ATCCGAAAAGAGGGATTAAGAAAAAGAGCTGAGGAAGAGGCTGCCCGTCT
TGAAGAATTGAAGAGACAAGCTGAAATCGAACGACAGAAATTGGAAGAGG
AAGCGGCCTCTCAGAGAATCGCTAAAGAAGAATACGAACAACGCGCCGCA
GCCGCCGCCGAAGAAGCTGAACGCCGCGCGGTCGAGATCGAAGAGAAGCA
AAGAGAAGCAGAGAGATTACAACAAGAATTGGCTGAATCTCAACGTCGTG
AAGATGAACAGAAACAGGAATTATTGAAGATCATTTCGACACCACCTACC
ATCATGGTACAAACAGATGAGGCTGAAGAAACCTCCAATGAACACGGTGC
TGATCTGGAAGAAGCTGAAATGGACAATCGTGAATTGGAATACACTTCGG
AACAAGACAAGAATGAACGGCTCAAGAACCAATTGGCTAGCCTGAGTGAC
GAATTGAATCAAGCTCGTGATTCAGCTCAATTAACACATGAAGATTTGTT
GCACGAAGGGAACTTGAAAGAAGGTCGTGATAAATACAAAACACTTCGAC
AAATCCGACAAGGAAACACAAGACAACGTATTGATGAATTCGAATCTTTG
TAAatGCCTTCAAAGCCAATCAGTGTTCGCGTCACCACTATGGACGCCGA
ACTGGAGTTTGCCATCCAACCCAGTACCTCTGGTAAACAACTCTTCGATC
AAGTCGTCAAAACTATTGGTTTGAGAGAAATCTGGTTTTTCGGTCTGCAA
TATGTCGATACAAAAGGTGATACAACGTGgttaaaattaaacaaaaaagt
gacgtcacaagaTATCAAAAAGGAAACACCATaccaatttaaattccgct
CCAAATTTTTCCCTGAAGATGTCGCAAATGAATTAATTCAAGAAGTCACA
CGAAAACTTATTTATTACCAAGTTAAAGACTCTATACTAACTGAAGAGGT
GTACTGTCCGCCTGAAACTTCAGTTCTTTTATCCTCGTACGCTATGCAAG
TCAAATATGGAGATTATAAACCTGAAACACACACCCAAGGATTTTTATCG
AAGGATCGTTTATTGCCACAAAGAGTATTGAACCAGCACAAAATGAGCCA
TTCTCAATGGGAAGAACGTATTGTCAACTGGTGGGCTGAACACAAAGAAA
TGCTCAGGGACGATGCTGTACTTGAATACCTCAAAATCGCACAAGATTTG
GAAATGTACGGAGTCAATTATTTCgaaatcaaaaacaagaaaGGAACCAA
ACTATTCCTTGGCGTTGACGCATTGGGATTGAATATTTACGAACAAAGTG
ACAAATTGACTCCCAAAATTGGTTTCCCATGGAGTGAAATCCGTAACATT
TCTTTCAACGATAAAAAATTCGTTATCAAACCCATTGATAAGAAGGCGCC
TgAATTTGTATTTTACGTCGACCGATTACGAATCAATAAGCGAATCTTGT
CGTTGAGCATGGGTAATCACGAATTATACATGAGACGACGAAAACCCGAC
ACCATCGAAGTCCAACAGATGAAAGCACAAGCACGCGAAGAGAAATTGGC
TAAACAACAAGAAAGAGCTCGATTGACGCGCGAGAAACAGGCCCGTGAAG
ATGCCGAACGTGAAAAGCTCGAAATGGCCGATCGTCTGAGAAAATTCGAA
GAGGAAGCTAAAGTCGCTCAACAAGCGCTTGACCAAGCTAAAGAGGACGC
CATCCGAAAAGAGGGATTAAGAAAAAGAGCTGAGGAAGAGGCTGCCCGTC
TTGAAGAATTGAAGAGACAAGCTGAAATCGAACGACAGAAATTGGAAGAG
GAAGCGGCCTCTCAGAGAATCGCTAAAGAAGAATACGAACAACGCGCCGC
AGCCGCCGCCGAAGAAGCTGAACGCCGCGCGGTCGAGATCGAAGAGAAGC
AAAGAGAAGCAGAGAGATTACAACAAGAATTGGCTGAATCTCAACGTCGT
GAAGATGAACAGAAACAGGAATTATTGAAGATCATTTCGACACCACCTAC
CATCATGGTACAAACAGATGAGGCTGAAGAAACCTCCAATGAACACGGTG
CTGATCTGGAAGAAGCTGAAATGGACAATCGTGAATTGGAATACACTTCG
GAACAAGACAAGAATGAACGGCTCAAGAACCAATTGGCTAGCCTGAGTGA
CGAATTGAATCAAGCTCGTGATTCAGCTCAATTAACACATGAAGATTTGT
TGCACGAAGGGAACTTGAAAGAAGGTCGTGATAAATACAAAACACTTCGA
CAAATCCGACAAGGAAACACAAGACAACGTATTGATGAATTCGAATCTTT
GTAAatGCCTTCAAAGCCAATCAGTGTTCGCGTCACCACTATGGACGCCG
AACTGGAGTTTGCCATCCAACCCAGTACCTCTGGTAAACAACTCTTCGAT
CAAGTCGTCAAAACTATTGGTTTGAGAGAAATCTGGTTTTTCGGTCTGCA
ATATGTCGATACAAAAGGTGATACAACGTGgttaaaattaaacaaaaaag
tgacgtcacaagaTATCAAAAAGGAAACACCATaccaatttaaattccgc
tCCAAATTTTTCCCTGAAGATGTCGCAAATGAATTAATTCAAGAAGTCAC
ACGAAAACTTATTTATTACCAAGTTAAAGACTCTATACTAACTGAAGAGG
TGTACTGTCCGCCTGAAACTTCAGTTCTTTTATCCTCGTACGCTATGCAA
GTCAAATATGGAGATTATAAACCTGAAACACACACCCAAGGATTTTTATC
GAAGGATCGTTTATTGCCACAAAGAGTATTGAACCAGCACAAAATGAGCC
ATTCTCAATGGGAAGAACGTATTGTCAACTGGTGGGCTGAACACAAAGAA
ATGCTCAGGGACGATGCTGTACTTGAATACCTCAAAATCGCACAAGATTT
GGAAATGTACGGAGTCAATTATTTCgaaatcaaaaacaagaaaGGAACCA
AACTATTCCTTGGCGTTGACGCATTGGGATTGAATATTTACGAACAAAGT
GACAAATTGACTCCCAAAATTGGTTTCCCATGGAGTGAAATCCGTAACAT
TTCTTTCAACGATAAAAAATTCGTTATCAAACCCATTGATAAGAAGGCGC
CTgAATTTGTATTTTACGTCGACCGATTACGAATCAATAAGCGAATCTTG
TCGTTGAGCATGGGTAATCACGAATTATACATGAGACGACGAAAACCCGA
CACCATCGAAGTCCAACAGATGAAAGCACAAGCACGCGAAGAGAAATTGG
CTAAACAACAAGAAAGAGCTCGATTGACGCGCGAGAAACAGGCCCGTGAA
GATGCCGAACGTGAAAAGCTCGAAATGGCCGATCGTCTGAGAAAATTCGA
AGAGGAAGCTAAAGTCGCTCAACAAGCGCTTGACCAAGCTAAAGAGGACG
CCATCCGAAAAGAGGGATTAAGAAAAAGAGCTGAGGAAGAGGCTGCCCGT
CTTGAAGAATTGAAGAGACAAGCTGAAATCGAACGACAGAAATTGGAAGA
GGAAGCGGCCTCTCAGAGAATCGCTAAAGAAGAATACGAACAACGCGCCG
CAGCCGCCGCCGAAGAAGCTGAACGCCGCGCGGTCGAGATCGAAGAGAAG
CAAAGAGAAGCAGAGAGATTACAACAAGAATTGGCTGAATCTCAACGTCG
TGAAGATGAACAGAAACAGGAATTATTGAAGATCATTTCGACACCACCTA
CCATCATGGTACAAACAGATGAGGCTGAAGAAACCTCCAATGAACACGGT
GCTGATCTGGAAGAAGCTGAAATGGACAATCGTGAATTGGAATACACTTC
GGAACAAGACAAGAATGAACGGCTCAAGAACCAATTGGCTAGCCTGAGTG
ACGAATTGAATCAAGCTCGTGATTCAGCTCAATTAACACATGAAGATTTG
TTGCACGAAGGGAACTTGAAAGAAGGTCGTGATAAATACAAAACACTTCG
ACAAATCCGACAAGGAAACACAAGACAACGTATTGATGAATTCGAATCTT
TGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038631XLOC_038631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061566-exon-scaffold_36-1491911889:579070..579123TCONS_00061566-exon-scaffold_36-1491911889:579070..579123Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1510915933:579070..579123TCONS_00061566-exon-scaffold_36-1510915933:579070..579123Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1575043694:579070..579123TCONS_00061566-exon-scaffold_36-1575043694:579070..579123Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1491911889:586828..587405TCONS_00061566-exon-scaffold_36-1491911889:586828..587405Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1510915933:586828..587405TCONS_00061566-exon-scaffold_36-1510915933:586828..587405Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1575043694:586828..587405TCONS_00061566-exon-scaffold_36-1575043694:586828..587405Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1491911889:587710..587953TCONS_00061566-exon-scaffold_36-1491911889:587710..587953Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1510915933:587710..587953TCONS_00061566-exon-scaffold_36-1510915933:587710..587953Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1575043694:587710..587953TCONS_00061566-exon-scaffold_36-1575043694:587710..587953Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1491911889:588252..588818TCONS_00061566-exon-scaffold_36-1491911889:588252..588818Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1510915933:588252..588818TCONS_00061566-exon-scaffold_36-1510915933:588252..588818Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1575043694:588252..588818TCONS_00061566-exon-scaffold_36-1575043694:588252..588818Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1491911889:589040..589210TCONS_00061566-exon-scaffold_36-1491911889:589040..589210Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1510915933:589040..589210TCONS_00061566-exon-scaffold_36-1510915933:589040..589210Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1575043694:589040..589210TCONS_00061566-exon-scaffold_36-1575043694:589040..589210Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1491911889:589621..590689TCONS_00061566-exon-scaffold_36-1491911889:589621..590689Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1510915933:589621..590689TCONS_00061566-exon-scaffold_36-1510915933:589621..590689Clytia hemisphaericaexon
TCONS_00061566-exon-scaffold_36-1575043694:589621..590689TCONS_00061566-exon-scaffold_36-1575043694:589621..590689Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061566-proteinTCONS_00061566-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:579070..590689 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
190.005	171.329	247.878	253.961	215.644	166.998	246.991	273.696	161.245	176.093	164.245	125.267	154.625	152.434	181.402	201.328	204.777	183.435	123.708	148.72	157.689	159.702	167.227	166.648	164.601	182.612	313.174	284.073	235.577	230.286
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000798Ez/rad/moesin-like
IPR019749Band_41_domain
IPR018980FERM_PH-like_C
IPR011259ERM_C_dom
IPR011993PH_dom-like
IPR019748FERM_central
IPR011174ERM
IPR018979FERM_N
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR019747FERM_CS
IPR000299FERM_domain
IPR008954Moesin_tail
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008092cytoskeletal protein binding
GO:0003779actin binding
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
molecular_function GO:0003779 actin binding
molecular_function GO:0008092 cytoskeletal protein binding
Blast
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BLAST of TCONS_00061566 vs. Swiss-Prot (Human)
Match: RADI (Radixin OS=Homo sapiens GN=RDX PE=1 SV=1)

HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 356/577 (61.70%), Postives = 436/577 (75.56%), Query Frame = 1 
Query:  100 VRVTTMDAELEFAIQPSTSGKQLFDQVVKTIGLREIWFFGLQYVDTKGDTTWLKLNKKVTSQDIKKETPYQFKFRSKFFPEDVANELIQEVTRKLIYYQVKDSILTEEVYCPPETSVLLSSYAMQVKYGDYKPETHTQGFLSKDRLLPQRVLNQHKMSHSQWEERIVNWWAEHKEMLRDDAVLEYLKIAQDLEMYGVNYFEIKNKKGTKLFLGVDALGLNIYEQSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPEFVFYVDRLRINKRILSLSMGNHELYMRRRKPDTIEVQQMKAQAREEKLAKQQERARLTREKQAREDA-------EREKLEMADRLRKFEEEAKVAQQALDQAKEDAIXXXXXXXXXXXXXXXXXXXXXQAEIERQKLEEEAASQRIXXXXXXXXXXXXXXXXXXXXXXXXXKQREAERLQQELAESQRREDEQKQELLKIISTPPTIMV---------QTDEAEETSNEHGADLE-EAEMDNR-ELEYTSEQDKNERLKNQLASLSDELNQARDSAQLTHEDLLHEGNLKEGRDKYKTLRQIRQGNTRQRIDEFESL 1776
            VRVTTMDAELEFAIQP+T+GKQLFDQVVKT+GLRE+WFFGLQYVD+KG +TWLKLNKKVT QD+KKE P QFKFR+KFFPEDV+ ELIQE+T++L + QVK++IL +E+YCPPET+VLL+SYA+Q KYGDY  E H  G+L+ DRLLPQRVL QHK++  QWEERI NW  EH+ MLR+D+++EYLKIAQDLEMYGVNYFEIKNKKGT+L+LGVDALGLNIYE  DKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAP+FVFY  RLRINKRIL+L MGNHELYMRRRKPDTIEVQQMKAQAREEK  KQ ERA+L  EK+ RE A       EREK E+ +RL++ EE+   AQ+ L++    A+  +  RKRA+EEA RLE+ +R AE  +  + ++AA Q   +E+     A    +        ++K+ EA   Q +   +Q   ++ K+EL  ++S PP             + DE +E + E  A+L  E  M++R E E  +E  KNER+K QL +LS EL QARD  + T  D+LH  N+K GRDKYKTLRQIRQGNT+QRIDEFE++
Sbjct:    7 VRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKERRAAEEAKSAIAKQAADQMKNQEQLAAELAEFTAKIALLEEAKKKKEEEATEWQHKAFAAQEDLEKTKEELKTVMSAPPPPPPPPVIPPTENEHDEHDENNAEASAELSNEGVMNHRSEEERVTETQKNERVKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRDKYKTLRQIRQGNTKQRIDEFEAM 583
The following BLAST results are available for this feature:
BLAST of TCONS_00061566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RADI0.000e+061.70Radixin OS=Homo sapiens GN=RDX PE=1 SV=1[more]
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