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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061572 ID=TCONS_00061572|Name=TCONS_00061572|organism=Clytia hemisphaerica|type=transcript|length=3009bp
CTCAAAGTtgtgaatttgatgttttcacGTTGCAGTTGTAGTTGCTGTTG
TGACTGCGGAAACTCTCTACTATCTCCACAGTGCTCCACCGCAGagacgg
taggtaaaaatgcacACTTTAATATTGTGGAAGATTAGAGGAATttaaac
attgtcaattttatTCTTTCTGTTAAAGAgaaatgatttagatatttgaa
catgatatcaatgataaatttttatggattttctcctgaaaatttcacaa
aaattcatcttaAAAGAAGTTCTTTAACTACCATTTCTCTACtgggtttc
cttatgagaaccagatttTTACCTACGGTTTTGTGAAGTTTCCCGCTtcc
gctaaaatcaaaacaatggaaaattgtttggacgcgTGCGCACTGAATGA
TGTAATAATTAAACTAATCAAACggtatttttaatcaaactttgtcaACC
TTAATCGAGCTTTGTTGTTTGATTAAAGAAATCAAGCTTaatcaaacttt
taaaaaaaagaaaccttaataatttgattagtttgattacatTAATCGAA
CATAGNcttaatcaaactttttaaaaaaagaaaccttaataatttgatta
gtttgattacatTAATCGAACATAGTGGAACTTTGTTGAATTCAATTGAA
CAGTTATTTGAGAAAAACCCTTCTCTAGGCCTCTGCGAGCGTGATCTATA
GATTGGCGATCTAAGTTTTGATTGACCCTTGAAAAGAGAATTGTAATCAT
AATCGGCGCCGAAGTCTCTCCACCTGAAAGTGGAAAATAAAGGCCACTAT
TTTCAGAACGCTCTTGGAGGTCTTATCTAATAAAGTATAAGCTCGAAGGG
CTAAAAaggaatctttaacctttctcaggcaagaaaaactGAAGCCTTAG
AGCATATTTGTCATcacaagcgatttgaagtataAATAAAACCTATTGTT
TGATTTGCGATAGGGCGAAAAGAAATAagcgatgaaaaatgaaaaccttT
TCATTCTACATCgttaattattttttacttcgtcgtaaaaaagaacaata
tatttttaattCCAGACATATGTCTAGATTTATTTTTTGCGACAGGTTTT
TgcgacaaactttttttttcagtggacacCCAGCTTTAATGTTGAATTGG
TTATGTGCATATTTTGCTTGTCTGAAAAAAAACCTCACTCGACTGGccgc
aaaaaactttttaaaagacTAAAATGATACCGCGAAAAATATCCTATTGA
AAAGTACATATTTTTCATAAGCAACCAGGTTTTCAAGGTTTGAACCTTCA
AATTAGCTGACTTCTTTGGCagcacaaaaattttttttttttgtggtAGG
GTAACTCTCAAAAAAAACCTTCACCAGCCTATTTCTGGAAGCAAGGCATT
CTTTTATTTGGCCTGATTGTCTGACTTCTGATTATTAAGAAGACTTTCTA
CTTCTTAATCTTGTAAGGATTTGCTTTTGACTATCTTATTTACCGGCGAA
GGTACAGATAAAACCTTACTTCGACTGACAGTAAATAATTCCTTTTTGAA
ATTGCACAAGAAAATGACAACATGTTGCAAATGAAAACATTGATCTCAAA
CCCCTGATTCATTGATgaaaacatttgtttttttaCTAATGTGTTGCAAa
tgaattataaaaaaatagaaaatacttatatttttagatagtataaataa
aaataatttatgtgATGTTGTCCCTAATATCAATTAGAAACTTGCAAAAA
AGTAATACTTGGAGCCGAGCTTTTTCTCAGTTGATGCCAGTGTCTACAGC
TGTTTTGCAACACCAAAATGCAGAAGGAAAGACAATTATGCAAAACATAT
CTGAAATATGGAGTGGTTTCTTACTTGCTGTACCAAAGAAAAGACGGTCA
ATTGCTAAAAGAAGATGGCTGAGAAAATTTAAAGCCTTAAAGCCAAGAGA
TGATATTGAGGACTGTGTTGTTTGCGGTGGTAAAAAACTACGTGGAAAAC
TTTGCCATCATTGTTATCAATGGACAATGTCCTTAACAGAAAAAGTCtgg
caaaaacaaaaagatgaagGTACACTTAGGAAGGATCGATTtgtcaaata
ataaaaaaatcgatTTGAATATTGATTAAATTTTAGAACATGTTTTTATA
TTGTGACTGTGTATTTCTATGTATAATTTTGTGAGAAACATATATATAAA
GTGTCCAAATCAATTTATCTTTTATCAATTCCTTGATGGGTTCTGTGAAA
CTTTGAGAAGTCCTTTCTATGTGTTTTACTTTGTCTTATTATATATTATG
ATTCCTTTTAAATCTCCGAATTCATGTTTTCTGGGCATAGTTTTTAGTGA
TGCTGCCACCTCATTCTCATGTGATATCAGGTGTTCTGTTAAAGAGAATC
CAAATCATATTGGTAAAAAGTCTTCTTACAAttgcaacattttttgaatg
caaaattattactttttattctttaacTTTACAATATGGAAGACATGAAC
GAGAAAACTCAACATGGTTTAAGGAATTACCTCCAAAAATTTAAGgaaat
tgactttgaagaAGTTAAATCTATTGAATTGATTGTTGGCAATGAATCAG
CAGATCTTGATAGCATTGTTTGTCCTCTTGTTTTGGCGTATTACCGATCA
TGCAAAATTAATATTCAGaTTGATGAATCAAATTCAATATGTTTACCTGT
TGTTTGGTGCCACAAAGATGACGTCGAATTAACCACTGAAGCAGTTGCAT
TATTCAAGGACACCTGCTTGCCTATAAAAGATCTGTTATTCCAAAATGAT
TGGGAAGCTTTAAAGGAAAAGTTTTCACACAAGGATTTGAAGGTGACTTT
AGTTGATCATAATCACGCAAGGGAGCACCCTGACTTAAATgaatttgttg
ttgaaattattGATCATCGCATTGATACAAATGACTTCATAAACATATCC
AAGAAGATTCAACTCTTGGGTTCCTGTTCCTCaataatcgcacaatggct
tcaTCAAAC Run BLAST on NCBI transcript from alignment at scaffold_36:669228..672879+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061572 ID=TCONS_00061572|Name=TCONS_00061572|organism=Clytia hemisphaerica|type=transcript|length=3652bp|location=Sequence derived from alignment at scaffold_36:669228..672879+ (Clytia hemisphaerica)
CTCAAAGTtgtgaatttgatgttttcacGTTGCAGTTGTAGTTGCTGTTG
TGACTGCGGAAACTCTCTACTATCTCCACAGTGCTCCACCGCAGagacgg
taggtaaaaatgcacACTTTAATATTGTGGAAGATTAGAGGAATttaaac
attgtcaattttatTCTTTCTGTTAAAGAgaaatgatttagatatttgaa
catgatatcaatgataaatttttatggattttctcctgaaaatttcacaa
aaattcatcttaAAAGAAGTTCTTTAACTACCATTTCTCTACtgggtttc
cttatgagaaccagatttTTACCTACGGTTTTGTGAAGTTTCCCGCTtcc
gctaaaatcaaaacaatggaaaattgtttggacgcgTGCGCACTGAATGA
TGTAATAATTAAACTAATCAAACggtatttttaatcaaactttgtcaACC
TTAATCGAGCTTTGTTGTTTGATTAAAGAAATCAAGCTTaatcaaacttt
taaaaaaaagaaaccttaataatttgattagtttgattacatTAATCGAA
CATAGNcttaatcaaactttttaaaaaaagaaaccttaataatttgatta
gtttgattacatTAATCGAACATAGTGGAACTTTGTTGAATTCAATTGAA
CAGTTATTTGAGAAAAACCCTTCTCTAGGCCTCTGCGAGCGTGATCTATA
GATTGGCGATCTAAGTTTTGATTGACCCTTGAAAAGAGAATTGTAATCAT
AATCGGCGCCGAAGTCTCTCCACCTGAAAGTGGAAAATAAAGGCCACTAT
TTTCAGAACGCTCTTGGAGGTCTTATCTAATAAAGTATAAGCTCGAAGGG
CTAAAAaggaatctttaacctttctcaggcaagaaaaactGAAGCCTTAG
AGCATATTTGTCATcacaagcgatttgaagtataAATAAAACCTATTGTT
TGATTTGCGATAGGGCGAAAAGAAATAagcgatgaaaaatgaaaaccttT
TCATTCTACATCgttaattattttttacttcgtcgtaaaaaagaacaata
tatttttaattCCAGACATATGTCTAGATTTATTTTTTGCGACAGGTTTT
TgcgacaaactttttttttcagtggacacCCAGCTTTAATGTTGAATTGG
TTATGTGCATATTTTGCTTGTCTGAAAAAAAACCTCACTCGACTGGccgc
aaaaaactttttaaaagacTAAAATGATACCGCGAAAAATATCCTATTGA
AAAGTACATATTTTTCATAAGCAACCAGGTTTTCAAGGTTTGAACCTTCA
AATTAGCTGACTTCTTTGGCagcacaaaaattttttttttttgtggtAGG
GTAACTCTCAAAAAAAACCTTCACCAGCCTATTTCTGGAAGCAAGGCATT
CTTTTATTTGGCCTGATTGTCTGACTTCTGATTATTAAGAAGACTTTCTA
CTTCTTAATCTTGTAAGGATTTGCTTTTGACTATCTTATTTACCGGCGAA
GGTACAGATAAAACCTTACTTCGACTGACAGTAAATAATTCCTTTTTGAA
ATTGCACAAGAAAATGACAACATGTTGCAAATGAAAACATTGATCTCAAA
CCCCTGATTCATTGATgaaaacatttgtttttttaCTAATGTGTTGCAAa
tgaattataaaaaaatagaaaatacttatatttttagatagtataaataa
aaataatttatgtgATGTTGTCCCTAATATCAATTAGAAACTTGCAAAAA
AGTAATACTTGGAGCCGAGCTTTTTCTCAGTTGATGCCAGTGTCTACAGC
TGTTTTGCAACACCAAAATGCAGAAGGAAAGACAATTATGCAAAACATAT
CTGAAATATGGAGTGGTTTCTTACTTGCTGTACCAAAGAAAAGACGGTCA
ATTGCTAAAAGAAGATGGCTGAGAAAATTTAAAGCCTTAAAGCCAAGAGA
TGATATTGAGGACTGTGTTGTTTGCGGTGGTAAAAAACTACGTGGAAAAC
TTTGCCATCATTGTTATCAATGGACAATGTCCTTAACAGAAAAAGTCtgg
caaaaacaaaaagatgaagGTACACTTAGGAAGGATCGATTtgtcaaata
ataaaaaaatcgatTTGAATATTGATTAAATTTTAGAACATGTTTTTATA
TTGTGACTGTGTATTTCTATGTATAATTTTGTGAGAAACATATATATAAA
GTGTCCAAATCAATTTATCTTTTATCAATTCCTTGATGGGTTCTGTGAAA
CTTTGAGAAGTCCTTTCTATGTGTTTTACTTTGTCTTATTATATATTATG
ATTCCTTTTAAATCTCCGAATTCATGTTTTCTGGGCATAGTTTTTAGTGA
TGCTGCCACCTCATTCTCATGTGATATCAGGTGTTCTGTTAAAGAGAATC
CAAATCATATTGGTAAAAAGTCTTCTTACAAttgcaacattttttgaatg
caaaattattactttttattctttaacTTTACAATATGGAAGACATGAAC
GAGAAAACTCAACATGGTTTAAGGAATTACCTCCAAAAATTTAAGGTGAG
ACAATTTTTATTGCAAACCAAAGAAAGTGAGAAGATTATTgtccaaatag
aaaaaaactttaattagTTCCCATGTTGGTAAAGATCAGCTCCCACAAAA
AGTTACTTTATTTACTATGAGGTAATGAAAACAGGATTCCTCTGGGAAAA
ATTGCCATTTTAATGAAATGCCAAGAATCATATAGCTTAGTGTTATACAC
TCTTTGTCTTGAGACCATTTtaacttctttttcaaaagaatgttGACATG
GTCCAAATACAACAATGGTTTTGTATTTCCCTTttaggaaattgactttg
aagaAGTTAAATCTATTGAATTGATTGTTGGCAATGAATCAGCAGATCTT
GATAGCATTGTTTGTCCTCTTGTTTTGGCGTATTACCGATCATGCAAAAT
TAATATTCAGGTTTCAAGCATtatatattttcttcattttgttaTCTCAT
GATGAGACGACCTTTTCGATACAAGTTCTTGATACCTGAATGTATGTTTC
CAGGATCCTTGTCACAAAAGCCTTGtcctttgaaaaaaagtatgggtata
taaatcaaaagaaatgatATTCATCCAAGTTAGTAAAGTTTCTTGtgatg
tttttctcaaagaTTGATGAATCAAATTCAATATGTTTACCTGTTGTTTG
GTGCCACAAAGATGACGTCGAATTAACCACTGAAGCAGTTGCATTATTCA
AGGACACCTGCTTGCCTATAAAAGATCTGTTATTCCAAAATGATTGGGAA
GCTTTAAAGGAAAAGTTTTCACACAAGGATTTGAAGGTGACTTTAGTTGA
TCATAATCACGCAAGGGAGCACCCTGACTTAAATgaatttgttgttgaaa
ttattGGTAAGCTAATATTTTGaattaaatgtttttaatgTGTGTTTAGA
AAGTACTAAGTGAAAACCTTCTTTCCAATTCTGGACATTATATGATTCAA
ATGATTCATTCACTACCTCCTAGATTTTATAAGCACTTCTATTTGCTAAT
TTCAGATCATCGCATTGATACAAATGACTTCATAAACATATCCAAGAAGA
TTCAACTCTTGGGTTCCTGTTCCTCaataatcgcacaatggcttcaTCAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061572-exon-scaffold_36-1491911889:669228..671772 | TCONS_00061572-exon-scaffold_36-1491911889:669228..671772 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1510915933:669228..671772 | TCONS_00061572-exon-scaffold_36-1510915933:669228..671772 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1575043694:669228..671772 | TCONS_00061572-exon-scaffold_36-1575043694:669228..671772 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1491911889:672065..672187 | TCONS_00061572-exon-scaffold_36-1491911889:672065..672187 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1510915933:672065..672187 | TCONS_00061572-exon-scaffold_36-1510915933:672065..672187 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1575043694:672065..672187 | TCONS_00061572-exon-scaffold_36-1575043694:672065..672187 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1491911889:672390..672633 | TCONS_00061572-exon-scaffold_36-1491911889:672390..672633 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1510915933:672390..672633 | TCONS_00061572-exon-scaffold_36-1510915933:672390..672633 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1575043694:672390..672633 | TCONS_00061572-exon-scaffold_36-1575043694:672390..672633 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1491911889:672783..672879 | TCONS_00061572-exon-scaffold_36-1491911889:672783..672879 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1510915933:672783..672879 | TCONS_00061572-exon-scaffold_36-1510915933:672783..672879 | Clytia hemisphaerica | exon |
| TCONS_00061572-exon-scaffold_36-1575043694:672783..672879 | TCONS_00061572-exon-scaffold_36-1575043694:672783..672879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:669228..672879 + |
Blast
The following BLAST results are available for this feature:
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