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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061593 ID=TCONS_00061593|Name=TCONS_00061593|organism=Clytia hemisphaerica|type=transcript|length=2758bpRun BLAST on NCBI protein sequence of TCONS_00061593-protein >TCONS_00061593-protein ID=TCONS_00061593-protein|Name=TCONS_00061593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp MYPRRRRMVHLIIICVLILSAIPLLLLYMEDVEVTLSIKHKALGRDTRANRun BLAST on NCBI transcript from alignment at scaffold_36:901481..916990+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061593 ID=TCONS_00061593|Name=TCONS_00061593|organism=Clytia hemisphaerica|type=transcript|length=15510bp|location=Sequence derived from alignment at scaffold_36:901481..916990+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:901481..916990+ >TCONS_00061593 ID=TCONS_00061593|Name=TCONS_00061593|organism=Clytia hemisphaerica|type=CDS|length=17064bp|location=Sequence derived from alignment at scaffold_36:901481..916990+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061593 vs. Swiss-Prot (Human)
Match: GLT13 (Polypeptide N-acetylgalactosaminyltransferase 13 OS=Homo sapiens GN=GALNT13 PE=2 SV=2) HSP 1 Score: 493.426 bits (1269), Expect = 2.049e-163 Identity = 254/508 (50.00%), Postives = 339/508 (66.73%), Query Frame = 1
Query: 1045 NRDPRSPGERGNGYMISSASKLDKELEKRGYEKHAFNQLVSDRISLYRSLKDYRNPACRSKKYPTKLPSTSVIICFHNEAWSTLLRTVHSVINRTPPDYLKEIVLVDDASTRDDLKQALEDYIINLP-KVNIVRLKKREGLIRARLEGAKVSKGEVLTFLDAHCECTLGWIEPLLAKIKEKKSNVVMPVIDEISETDFHYNAVPEPFQRGVFKWRLEFTWRPIPQYEETRRV-DAADGIRTPVMAGGLFSMDRDYFYKLGSYDTGMDIWGGENIEISFRIWMCGGSIEMLPCSRVGHVFRPKFPYSFPSSRKGDNDVVSRNLMRVADVWMDDYKKHFYNIRFDLKKKEPEDTTERKQLRQNLQCKSFSWYLENIYPELEIPDDNFVQAGEIKNPDTTVCLDTLGKGEASVVGLYECHGQGGNQYFTLNKKGEIKNEDNCLTI---NGPNLVLRECEERSRKGQRWAFKGNQ--IKSITQNSCL---QVRNKMNLIVGPCTSGQTQKWL 2538
+R+ PGE G +I K D+E K ++ + FN + SD I+L RSL D R C++K YP +LP+TSV+I FHNEAWSTLLRTV+SVINR+P L E++LVDDAS RD LK LE+Y+ NL V I+R+++R GLIRARL GA SKG+V+TFLDAHCECTLGW+EPLLA+IKE + VV P+ID IS+ F Y A + G F W+L F W P+PQ E RR D +RTP MAGGLFS+DR+YF ++G+YD GMDIWGGEN+E+SFRIW CGGS+E++ CS VGHVFR PY+FP G V+++N R+A+VWMD++K FY I + K + D + RK LR+NL+CK FSWYLENIYP+ +IP + GEI+N +T CLD +G+ E VG++ CHG GGNQ F+ EI+ +D CL + NGP ++L+ C R Q W + + ++ + N CL +KM + C+ ++Q+WL
Sbjct: 51 SRNQEGPGEMGKAVLIP---KDDQEKMKELFKINQFNLMASDLIALNRSLPDVRLEGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERDFLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSD-MTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKATPYTFPG---GTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRENLKCKPFSWYLENIYPDSQIP-RRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLNGPVIMLK-CHH-MRGNQLWEYDAERLTLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWL 548 The following BLAST results are available for this feature:
BLAST of TCONS_00061593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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