|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061599 ID=TCONS_00061599|Name=TCONS_00061599|organism=Clytia hemisphaerica|type=transcript|length=969bp
GTTGCTTTGGCGACGATCCAAGTGCAAGCTAGTGCTGATAATCCTTTCAC
ATACGAAGACAATTTGAAAGCTGTCGATGCATACTTTTGTAGGGGAAAAT
CTGGCAATTATCGCCATCCAAATGGAGCCTGCGATCACTACATAGCCTGC
GGTGTTGGATGTAAAAATGCTAGAAGCAGACGATCATACAGACACCTTTG
TACACAAAACATCATGCCGTGCCCAGGTGGTCTTTTCTACGATGAGAAAG
CTTATGGAGGATATGGAGCTTGTATTTATAAAGCTGAATCTAACTGTCTT
CAATTCCAAGGAGAAGTTTGCTACGGATCCACTCAAGAGTCATATGGCAC
TTACACTCATCAATGTACTGGACAAGTCACCTTATTGAAACTCGTCTCCA
AATCTGGAAGTGTTGGATGTTACAAAGGTGTCACGCCTGGTTACTGGGGT
GGATGTCCACACGCCCCACCAATCAACGTCTGGATCACCGAGCACAGAGG
TGACAACTtcaaatacgtcaaaaaatcaTACTACGACATTAAACATGACG
TTAAATTTCCCGAACCATTCACTGCTTACGACGCCAATAAATACGGATTC
TATTATTTGAACGGATTCCATGACAAATCATCCTTCATCTATTTCACTGC
AGAACATAATGATTATTATACCTACTTCATCAAAGGAAAGAAATACCGTG
TCTATTATGGTGAAGATTTGTTTGATCAAGGAGTCGGAAACAATGTAGGC
AAACATTGCGTTTACGTCTACGCATCGTTCTACAAATACTACAAACctaa
tcaagttatcaaattttaagtttaataattgatttactgaaattttttaa
caaaaccGATATTTTTTTTAACCCAAATACTTTCTaaaactttgtatgtt
ttattttgaatcttttagatttttttaaaatctttaaaatcttttatatt
tctattgtcataatacaaa Run BLAST on NCBI transcript from alignment at scaffold_36:926043..934881+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061599 ID=TCONS_00061599|Name=TCONS_00061599|organism=Clytia hemisphaerica|type=transcript|length=8839bp|location=Sequence derived from alignment at scaffold_36:926043..934881+ (Clytia hemisphaerica)
GTTGCTTTGGGTAAGTGCTTTATCAAGCCTTAAACAGAACATCTTTATCT
TTAgtgacaatagaatttctattccttTGAGATTTGCCACTGTGGGAAAA
TTCTCACCGGGGCTGTAAGACAAAGATGCTCTGTGGCATAAAGCTTAGAC
AATGCCGGGAAACGTCAAATGTTAGATAGATGTGGATTTTTAATtctatt
ttttacattttacactGGATTTTTTTGagtgaaacaaaaatttctttgcA
TCCGAAAAAACTTCCTAGATTCTTGTGGATACGGCCGAAATTTTGCCGTT
TTGTATatctaattctttttttatgttaTAGCGACGATCCAAGTGCAAGC
TAGTGCTGATAATCCTTTCACATACGAAGACAATTTGAAAGCTGGTAAGT
AGGAATTCATTTAAAATGGATTGAGCGAGGACAATAACACCTAAGTCTTA
AAGAGAGCATATAAAGTGTCAAAGCTGTGTAGtttgagtgtttttttttt
tgcttaaatgggataaattttcgggaattaaatttcgtggatggtgctca
cagatatctgtaaagcccgaagggctagataggcaactttaagctttctt
cagcaaaaaaaagtgaatatcggaaaaattattgttgctattgttttcca
aaacccgggaagcttctgattggtccatcgctgaaattctattgtataat
gtcacgtgactctggtaggaaatccttccaaagatgagttTCACTCTTTG
ACCAAGGCcgcttatctagcccttcgggctataCTATATCATTGATGGTG
CTACGTATAGACTGAAAATATCTTGATGATTTTGTGCCTTTTAACACTAA
TTATGCATATCGGTTGtcgaaatacgcattattagcgcttctttgataaC
ATTAAACATTCAAATCGTTATTCGACATTTATGGAGTTTTTCTCAAAACG
ATTTCGTGGTTGGGGCTAATTCCGCGTAAATAGCCGAAGAATCCGTATAC
ACCTTCTTTATTTTGAGTTATTGAGAAATTTATCATTACTATAATTTCCT
TCTTTTACATTTTAGTCGATGCATACTTTTGTAGGGGAAAATCTGGCAAT
TATCGCCATCCAAATGGAGCCTGCGATCACTACATAGCCTGCGGTGTTGG
ATGTAAAAATGCTAGAAGCAGACGATCATACAGACACCTTTGTACACAAA
ACATCATGCCGTGCCCAGGTGGTCTTTTCTACGATGAGAAAGCTTATGGA
GGATATGGAGCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTCCA
AGGAGAAGTTTGCTACGGATCCACTCAAGAGTCATAGTAAGTACTTGTTT
CCGTCACAACTGGCGGCCATCTTAAAATCATagccaaattttaagaaaac
gagAATATTTATACAGGTTTAGGGAAATATTTCTTGCCCATCCTTTGCAA
GAGAACAAGAACAAAATATCTTTAATGATGTGATAATACAATATCTAGAA
ATTCTGGTATTATTCGCTCATCACTTAACTTTCATTCTTTAAGAAGCTTT
CCcttaaaacaatttaatttaCCTTTACAGTGGCACTTACACTCATCAAT
GTACTGGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTT
GGATGCTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGCCCACACGC
CCCACCAATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTTCAAAT
ACGTCAAAAAGTCATACTACGACATTAAACACGACGTCAAATTTCCCGAA
CCGTTTACCGCTTACGACGCCAACAAATACGGATTCTATTATTTGAATGA
ATTCCATGACAAATCATCCTTCATCTACTTTACTGCAGGGCATAATGATT
ATTACACCTACTTTGTCAAAGGAAAGAAATACCGTGTCTATTATGGTGAA
GATTTGTTTGATCAAGGAGTCGGAAACAATGTAGGCAAACATTGCGTTTA
CGTCTACGCATCGTTCTACAAATACTACAAAccaaatcaagttatcaaat
tttaatttttatatttgattcactcaatttttttaacaaaaccgATATTT
TCTTTTAACTTAAATACTTTCTAAAACtttgcacgttttattttgaatct
tttaaattttttcaaatcgtTCAAATCTTTTATATTTCTATTGTCATaat
acaaaacttttaaataattttaccTTAACCAGAACTACCCATTTTCTTCC
ATACTGAATTTTGAGTGATCCGTCATCTGTCTAAGTTTGTGGCATTTAAG
AAAATTGCCTCTTTTCCTTATGTTGTGGAAGACTATTTTGAAATTAGACT
TTATTGGTGACTGAACCTTAGAATCACCTACGAATCCATGGCTAATCTGA
CCTCCTGCTTACActattgatgattttgatggaaGCATTGACGGGGATAT
ATTCCTCTAATGTTACAGCGCTGGTCTATTTATGTTGCAAAATTATTTAA
TGCGTCACTGGCTTGCGAGGTTGATAAAATTGTATTCATAAAAAACCAGT
GACATACTTGAAACTTAGACCCAGAAGATATCATTCCAAAAAAACGTAGT
ATAAAAAAGCCATAGTATGATATGATGAAAATAATTTCATGAACACAGCT
TTGGTCGGCCTGAAAATTATCCCGGTGATAAAAATACCCCTGAGTTTTGT
TCTCATTCTGCAAAACACTGGTATTTTATTCATTACTATATATATGTTGT
GATCTCTAATCTACCTCAATATCAGTATACATCAGCGGACACTTGGTGCA
AAGTTGCCCAAAATTTTCctatattattttatatttatttgatGAACCTT
GAGAGCCGCTTTATAACTGACAGTAAGCTAGTAAATATTTAGTTAATTAA
GAATGCTATACAGTATTCTACAAATTGCTTATTAAACTGGCGACTAATAG
AAACAATTAGTCAACGTAAAGCAGgtaatttcattaatttgaatAATGCT
TAGAAACACATCATGTGTTGAGTTAAGTAAACAATCAACAAAGTAATAAA
ATCGCCAAATTTCCTATCAGCTAAGAAactgcaaaaattcaaaatcgaaa
atcaaaTAGAAAACGAGAGGTTTAACCCTGTGATGATACACGTTTTTCAT
GAGAACCTCCAAAATTTTTGACGCCTCTGGATGTCctttaattttgtttt
aagcctaaaaaaatgCTCTTATCatcttttgagattttttgtctATTTCT
TCGAATTCAGGTGTTTTAGTGtctcttttctttttggtcatcgaagcctt
attctCTTATCTAGTCTGTTTTTAATAATAGATTTcataataaaaagtta
aaagctaAAAGTGTGAAAGCAGCAAGAGCCAAAACACGCAAATTCtcagg
aaaatgggcaaaagaCACTTTTTgttacttgcttttatttaaTTTACTTA
TTTTGCCTTTTATcgattaaataaataaaatgatcTTGTACACAAAAGCA
TCGCCTAGATTCCAATGTTATTGTGCTATTGATCTTTACTTTTGATAAAc
ttaatcgtcagccgtgcaaaattactcgaatctgattggtttagaggagt
gcgattaatcgttaattgcactattaccactttttgcactcttcggcggg
gggacacttttgtccccttattcttttctctcccaagttcTGTGTCAGAT
ACTTTTTTTtgctatacagggtgtccctaattaaagtatcgagtttgaac
atgcgattgagtagaaagttttatgtgcgtgttcacaaaattgtatttca
agttctccctcttttttctttgtcattacgattaatttatacgttgtaaa
taccttttgtaataagcctgtgtgatggagaacgttcttatattttagcg
ataacacacacaaactcttctactcaatcgcatgttcaaactcgatactt
taattagggacaccctgtataataaaaaactcgtaacaaaggagaaaata
ccgtaatttgcattcgtccttcggactcgtgcaaattactattttctcct
ttgttactcgtgattaatctttaattgcactccaaaccatacgattacta
gtacaaattcaaaaagtaaatAGACCATGAAGTTTTCAAGCAAAACCNTT
TCATTCGTATTGATAAACTAAATTCAAAAAGTAAATAGACCATGAAGTTT
TCAAGCAAAACCCCCTGGTTTGTGACTTGATCTTTATGCTGCTTCAAGTT
TGGATCTGCTTTAATTTTGGCTTCTAACACGGGTGAAAGAAGGCAGGAAA
ACATTATACGCGCAAAGTTTACAGTCGTTATGGGGGTATACGGGTAAAAA
TCAGCGGTAGAGCTTCGAAGAAACTTGCAAACTCTACCGGctgtaaaatc
ttttaaacaaaaaaaaaataacagttTGTGAATTTTCTTCCTTGTTTTCT
TCACACCACTGTCTCTGTGCCCCAGTGGGTGTCGAGCATCCAGTGGGGTA
GGCtgtgaaaaatctgaaattcacTGCGGTGCaagatattttctaaaaat
tgagtggGTTGACCAATTTAACTTTGATTTTCACTGGGGCGAGGGAAATT
TTTAGACAATTCTTTGTATGCGCAGAATAGCTAGACGTAGAATAGCTAGT
TATTCTTGGTGCTATTCATTATGTAAAATGTCCCAATAAAAAGGTatcaa
atacacctttcccgttaTTCAGATTTCGCCCAGAAAAACTTGTTCTCCAT
CGTTGTGTTAAAAATTCACGAGACAAACTCGATTTTGACTGCGTTTGCTT
AGGGGAAAGTAATTTTTGTCTTCTATCTTTTGATGACCAAATtagtttga
aaagaaatttggaGGGTGATATTATATATGGATACGATAGAAGTTGagaa
aagtccaaaaaaccacCTTTTCCTAAGCAATCGCAAGCAAAAATGGATTT
GTTTACCTCCTGTCCAAAGAACGATGGAGAaatacgggaaaggtgtattc
caAAATGCAGTCCAAAAGTCTAAACTATCACGGAGATACTGAGGCTACTG
ACAGggaatatatttttcaactgtttttttttaagacgaTGTAGGTTGAC
TCAATAACGTTACATGGATAAAAAAAGTGGAGTATCTAAGGAAGTTCCTT
TGGAAGTAAGGAGACATATAAacttaactttaaaaaaaggaaaaggaaat
atatagtgactaaggaggcgcaaccatggtttgcgccgacagaagaaatt
ttgattttcgactttcTCGTTTGGCTAAAATCACTCCCTTTTCTCCTCAA
ATTTTGTAACTTTGAagaatttaaatgaaaataaaaccaatttcaaagtt
tttatgcTTCTTTTTTATATTACAGATACAACCATTCATATCAATCAATt
ttatcttcaattttttcCCGATTACGAATCATTTTCGCACTTGCCTTATT
CAAAAAGAGGGACTTTCATGCACattgaatatattttacacCATATGTTT
AGATCATGACTTCGACAATTTCAGCATGCTCAGCTATCCAGTTTTGATTA
CTATTGactgcgagcgaagcgagcaaaaaattttgagctttttttgTGTA
TTTCACTTTCAAAGCATGGGTTTAATAAGAGAAGGGAAGTTTCGAGTGGG
GTGACCCTTTTCATGTGAAATTTCTACTGGGGTACATCAAAAGCAGAACA
TTTTGAGTGGGGTATGTTTGGATTCTTCGCTATTTTCAGTTGGGTCATTT
TCAGCTACAAGattccagtggggtgagtgatttCTCTAGTGGGGTGAAAA
AATGggccatttttggaaaaattttccactggggtgaccagtggggtgga
tcccactgggtcacagacacaggggtgtttctTCGGCTATGAGCTTTCTT
TTTacatagtgattcgtcttagaatATAGAGTAGTCTACAAGCGAACCAC
TAAACTGAAAATCAGAGTCGCATCCATAGTACCATTGTTCTAATGATCGA
GCTATCCTTGAGATCTAACAGAAATGGTCCCTCAGCCAATCCTCTAATGT
TTTCGTGTCCTGTCTCTTCAAATTCCTCGCCTCTAGCTCACCATAAAGTA
ACATTCAACAAACCGCAAACTTTTGTATTATTTCTGTTTATTGTTTGTAA
ACAGAAAATGGCAAAATCTATATTCAGACTTCCTACGCACAGAAAATGTA
ATCAATATAGAACAAACATAAAGCTAATTAACAATCTGCCCGGATGGCTA
ATTGAATATccgtgaaaaagaaaaacagaaagtttGTAAAAGACTGAACG
AAAAGGATAGACTAAGGGAAAACAATATTCATGATTTCCGGAAGTCGTAA
ATTTTGCAACAAAATGATTAATTTCCTTGGTTCTCACAACAATTTGGTGT
ATAAAAGGGGGAAGTTTTGGAGGAATGTACATCATCACACAGCTCAACAC
AGCTTGTGAAGAAGAGCAACTAACAGAAGAAAATAAATTCACAAGCATCA
TGTTGGCAATCTATATTCTAGCCGTTGCTTTGGGTAAGTGCTTTATCAAG
CCTTAAACAGGACATCTTTATCTCAGTACTCTGATAAAGTTTTTAAAGAC
ACTTCTTCCCACGTCCTTACTGGAAAGTTCTCTCAACATTTtatccccgg
tgggaaaattaCTCCACAATTTCAGCCCATTCTCATAcccatttgaaaaa
aaattccaatccCAAACCACCCTCACTAAGATTTttaatttaagaacaat
agaatttccccattgagattttctACTGCGGGAAAAATTCTCACCGGGGC
TGTATGACAAAGGTTTTCTGTGGCATAAAGCTTAGACAATGCCGGGTGTA
AAAATGTTATNAATTCTCACCGGGGCTGTATGACAAAGGTTTTCTGTGGC
ATAAAGCTTAGACAATTCCGGGTGTAAAAATGTTATAAATCTTAAGTATA
TTTAGATTTTAGGTTTTAAATTCTATTTTCTACATTTTACATTGGATTTT
TTTGagtgaaacaaaaatttctttgcAACCGAAAAAAACTTCCTATATTC
TTGTGGATACGGTTGAATATTTGCCGTTTTGTATATCTAATTCCTTCTCT
ATGGTTGTAGTGACGATCCAAGTGCAAGCCAGTGCTAATAATCCTTTCAC
CtatgaagaaaatttgaaagctGGTAAGTAggaatttatttaatttgaat
taAGTGAGGACAACAATGTTTAAGTTGTAGTCTCAAGGAGAGTCTATGAA
GTGTCAATTTGAGTGTTATTTGCTTTaatgggatatatttttgggaatta
aatttcgcagatGGCTCGAACGTAGTAGCGtaggttgaaaatatttgaag
atcTTGTGCCTTTTTACACCAAATCATGCATCAGTTGtcgaaatacgcat
tattagcgcttctttgataacagtaaacattcaaattgTTATTCGGGACT
TTCATCAAAACGATTTCGTGTTTGGGGTCAATTTCACGTAAATAGCCGAC
GAAGTCGTATACTccttcttttattttgagttATTGAGAAATTCATCATC
ACTATAATTCCcttctttttatattttagttGATGCATACTTTTGTAAGG
GAAAATCTGGCAATTATCGTCATCCAAATGGAGCCTGTGATCACTACATT
GCCTGCGGTGTTGGAtgtaaaaatgctaaaaacagACGATCCTACAAACG
TCTTTGTACACAAAACATCATGCCGTGTCCTGGTGGTCTTTTCTACGATG
AGAAAGCTTATGGAGGATATGGAGCTTGTATTTATAAAGCTGAATCTAAC
TGTCTTCAATTTCAAGGAGAAGTTTGCTATGGATCCACTCAAGAGTCATA
GTAAGTACTTGTTTCCGTCACAACTGGTGGCCATCTTAAAATCATagcca
aattttaagaaaataagaatatctATGCAGGtttagggaaatatttaatg
cCCATCCTTTGCAAGAGAACaagaacaaaatgtttttaatgaTGTGATAA
TACAATATCTAGAAATTCTGCTATTATTCGCTTATCACTTAATTATCATT
CTTTAAGAAGTNTATGTTTTGTCGACAAGCCTTCCATTGAAACATTATTT
TGTATTAACTTGAGGCTTATTAATTTCTGAATCTTCAAAAGATTTCGTTT
TCACCACCTTGGCGATGGCATTCAccagaaataaaagttgataTAAGTTT
TGTTATTCTTACAGTGGCACTTACACTCATCAATGTACTGGACAAGTCAC
CTTATTGAAACTCGTCTCCAAATCTGGAAGTGTTGGATGTTACAAAGGTG
TCACGCCTGGTTACTGGGGTGGATGTCCACACGCCCCACCAATCAACGTC
TGGATCACCGAGCACAGAGGTGACAACTtcaaatacgtcaaaaaatcaTA
CTACGACATTAAACATGACGTTAAATTTCCCGAACCATTCACTGCTTACG
ACGCCAATAAATACGGATTCTATTATTTGAACGGATTCCATGACAAATCA
TCCTTCATCTATTTCACTGCAGAACATAATGATTATTATACCTACTTCAT
CAAAGGAAAGAAATACCGTGTCTATTATGGTGAAGATTTGTTTGATCAAG
GAGTCGGAAACAATGTAGGCAAACATTGCGTTTACGTCTACGCATCGTTC
TACAAATACTACAAACctaatcaagttatcaaattttaagtttaataatt
gatttactgaaattttttaacaaaaccGATATTTTTTTTAACCCAAATAC
TTTCTaaaactttgtatgttttattttgaatcttttagatttttttaaaa
tctttaaaatcttttatatttctattgtcataatacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061599-exon-scaffold_36-1491911889:926043..926052 | TCONS_00061599-exon-scaffold_36-1491911889:926043..926052 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1510915933:926043..926052 | TCONS_00061599-exon-scaffold_36-1510915933:926043..926052 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1575043694:926043..926052 | TCONS_00061599-exon-scaffold_36-1575043694:926043..926052 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1491911889:926374..926436 | TCONS_00061599-exon-scaffold_36-1491911889:926374..926436 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1510915933:926374..926436 | TCONS_00061599-exon-scaffold_36-1510915933:926374..926436 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1575043694:926374..926436 | TCONS_00061599-exon-scaffold_36-1575043694:926374..926436 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1491911889:927108..927378 | TCONS_00061599-exon-scaffold_36-1491911889:927108..927378 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1510915933:927108..927378 | TCONS_00061599-exon-scaffold_36-1510915933:927108..927378 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1575043694:927108..927378 | TCONS_00061599-exon-scaffold_36-1575043694:927108..927378 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1491911889:934257..934881 | TCONS_00061599-exon-scaffold_36-1491911889:934257..934881 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1510915933:934257..934881 | TCONS_00061599-exon-scaffold_36-1510915933:934257..934881 | Clytia hemisphaerica | exon |
| TCONS_00061599-exon-scaffold_36-1575043694:934257..934881 | TCONS_00061599-exon-scaffold_36-1575043694:934257..934881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:926043..934881 + |
Blast
The following BLAST results are available for this feature:
|
