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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061992 ID=TCONS_00061992|Name=TCONS_00061992|organism=Clytia hemisphaerica|type=transcript|length=2579bpRun BLAST on NCBI protein sequence of TCONS_00061992-protein >TCONS_00061992-protein ID=TCONS_00061992-protein|Name=TCONS_00061992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MAEKEIDQSTVLHIFVIGFHHQKGTQVEFCYPPIDFKDPLADVKEGEIFIRun BLAST on NCBI transcript from alignment at scaffold_361:517900..565778- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061992 ID=TCONS_00061992|Name=TCONS_00061992|organism=Clytia hemisphaerica|type=transcript|length=47879bp|location=Sequence derived from alignment at scaffold_361:517900..565778- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:517900..565778- >TCONS_00061992 ID=TCONS_00061992|Name=TCONS_00061992|organism=Clytia hemisphaerica|type=CDS|length=26352bp|location=Sequence derived from alignment at scaffold_361:517900..565778- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061992 vs. Swiss-Prot (Human)
Match: AVL9 (Late secretory pathway protein AVL9 homolog OS=Homo sapiens GN=AVL9 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.335e-48 Identity = 106/232 (45.69%), Postives = 153/232 (65.95%), Query Frame = 1
Query: 130 IDQSTVLHIFVIGFHHQKGTQVEFCYPPIDFKDPLADVKEGEIFIPRQWSALPYLAMPDGAHNYEDDHSFFHLPALTKGSKVSTDTIYGVACFRQIDSKKLINKDENVTRTTVQKSVCILMKTPLYSFVLSKLELVTHAYFNELDFSKTDILVECFDRMTHQLSTMAIGESLFHMGLNIADIVAXXXXXXXXXXXXXXXXXXXXXWGNPVKDVCKFLLSFISLFPRLLHKGL 825
+ + VLHI V+GFHH+KG QVEF YPP+ D +P +W LP+LA+PDGAHNY++D FFHLP T++G++C+RQI++K L + ++TR TVQKSVC+L K PLY + +KL+L+THAYF E DFS+ IL E ++ M L ++ S ++GL+ D+V F+ KVL+LFKL+LLEKKV+F+ +PV + L++ +SLFP ++ GL
Sbjct: 11 VPRGPVLHIVVVGFHHKKGCQVEFSYPPLIPGD-----GHDSHTLPEEWKYLPFLALPDGAHNYQEDTVFFHLPPRNGNGA----TVFGISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQISILKELYEHMNSSLGGASLEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYISPVNKLVGALMTVLSLFPGMIEHGL 233 HSP 2 Score: 159.844 bits (403), Expect = 7.737e-41 Identity = 87/237 (36.71%), Postives = 132/237 (55.70%), Query Frame = 1
Query: 883 DQHGLPLDIFEEGCLFQPYISLHNMTLLRKSRVTSFIVGCSNVLFKQQMHCPYDVLVDLETSTVNITDPELAQLLELSTEDLRFCDYITA-VVENSTETL----GWEGSDDWLRLQFKAYLLCLLSTVENTPAEELNELHPFNGPFCYVWASSNSFNLWSQRDHPGMDHFHTGHPFQGDITVSDLRLRLNHISQAFANEETRKKFNQAFTKTQDV----------VGGALNSAKIAL 1548
DQ+G+PL IF +G L PY++L LL V F+ G +N+LF+QQ H D +V++E + + I DPEL +LL +T DLRF DY+ V EN + GWEG D+W+R QF Y+ LL+ E++ L + F W +++++ +W+ HP + + HPFQG +VSD++LR +H Q +E +K N T +++V VGGA +SAK A+
Sbjct: 394 DQYGMPLAIFTKGYLCLPYMALQQHHLLSDVTVRGFVAGATNILFRQQKHLS-DAIVEVEEALIQIHDPELRKLLNPTTADLRFADYLVRHVTENRDDVFLDGTGWEGGDEWIRAQFAVYIHALLAATLQLDNEKI--LSDYGTTFVTAWKNTHNYRVWNSNKHPALAEINPNHPFQGQYSVSDMKLRFSHSVQ--NSERGKKIGNVMVTTSRNVVQTGKAVGQSVGGAFSSAKTAM 625 The following BLAST results are available for this feature:
BLAST of TCONS_00061992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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