TCONS_00062021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062021
Unique NameTCONS_00062021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062021 ID=TCONS_00062021|Name=TCONS_00062021|organism=Clytia hemisphaerica|type=transcript|length=5648bp
ATTTAGAGAAGTTCATTTCATGCCAAATGTTGCTTTTCCATGTCTCTTTT
TGATTGCTTCACTGTTGAAAAGCAAAGCAAGTGGTCTGGCGACGAGAAAG
GTTTATTTCTCaggtttttctttctttggtggtCCGCACATCCcttgaat
ttttataaaaaggggGTTTTTTCTGCTGCATGTATGTTAAGGAGATAATT
AATCATGGGAATCTTTCATTGTTGTTACTTATTTTTATTATGAATGTAAT
GCGTGCTGGAGCCGAAGGTAAAGATGGCCTTAAGGATCGAATTATCTCAT
TGTTTTGCAATTTGCAATGAATTTTTGGATTACCTACAAGctagaaattg
aaaattgatccttTTCCggatgcaaaatcatgcttaCCAAAAAATTGTGA
TGTACTTTCTATCCCTAATTTTGATGCCTGTGGCCTACAAAACAGAGATG
AAGGTTGAACATCTTGAGTTTTttatcttaaaggttttatggCAACGTCG
TCAATTTAGGAAGGGGGGTCATGGGTTcataaacaaaacattttctgtga
caagtTTGAGTTTGAATGGCTCCCATTATTTATAAAAGGCAATCACAAAT
CTTCAATTAGGAAAAAGACTCTTGAAATGAATTTACATACAAGGGCATGA
ACAAaagtaaaaatgaataaatttattCAGATCCTGGTACattatacttt
aggcgtacaaacttttgcgagcagaaacttttgctatttttgtattttgg
tcttttacgcgaaagtaaatgtccttgaaaattcttaacagggcaaTTCG
CAAAAGTTATAATGCTcacgaaaaattctcaaaaaaattggaaatctaca
aaaccttgaaattgtaataaatattaaatattcGGCATATTATTATCCTT
TAGTGCCTTTTTAAAGTTGCAGAGCAACCGTCTTTAGCAAATTTtaaagg
aatatttttcactttcaagttaatttttattcgaaaattctaatttttat
ccaacgattcgcaaaagtttatgtttgcgaaatatattttttcctcTAAT
TCGTGAAACTAAATATCtcaaatttcgtgatttttcgacctcgcaaaagt
ttctgctcgcaaaagtttgtacgcctaaagtaaacTATGAAAGTCTGGCG
TGCATGTTCAGCATGCCAATGATGCAGGCGCTGTGTTTGCCTAAACTTGT
GCTGCACTTGACTTTGGACAAGTGCCGCACCCAAGATCTGGGGCTACTGT
GTCATGAATATAAGCAAGGGTTTTTGCAAGAAAATTTCCCTAGTTTTCTA
ATTGGAAAAAGAGTGTGCCTAATTTTCCCATTCTTGGAAAAACATTTCCC
TGATTTGTGatttttggaagaaagtttACCTTAGTtgccaattttttgaa
aagatttctgATTCCACTTAAAAGTAataataatctacaatatatatgta
agcccTCCTTCAAACTATCCCCCCTTCCTTGCTATTCCCCtccctttttc
atgaaaatttctgaccgCCCCCCTTTTCGGAACTTTTCGGAAGGTGTTAA
GGGGATGCTTTGGAAATGTACAGGTAGACAACATTTGCATTTCTGCCTTT
ATTCAATTGGAAAGAATTTCATCATAATGTTATGACATTGAAACATAGCT
GGTTTGGTTTGAAACAGCATTTTTTTCAATACACTTGGTTTTCAtaggat
ttttttcagattttcaccaGATGGGAGGTGAGAGCTACCGGGTGATATCT
TTCATGTTGAGCTTGATTTCTTCCTTTGCGGATAAAGGATGAGGGATCTT
TTTAGGGTTCCAGGTGGATTTATCCGGTATCCAAGCATTTTCCCCAAGAA
AAGGTCTGGATATAGCAGGAGATCTGTTTTAGgacaagaaagattttttt
tagttAATTGGAAACAATCTTACTATTATCAGCCCTCAATAGATTTTTTT
GGATGAATTGAAATGTTATTTTGCaaataaattagaaaaaaaagctctct
aattttcaactttttcttccGGTTTTGTCATTTGTTTATAGATGTGTGTA
GATTTGTTCAAGAATTGTGTTGgacatttttaataatttatacACTTTTT
GATTCAGTCCTCTTAAAATATTCATCATGTGATTTGTTAAGGTTATTCAT
ATCTTGAATCATAGAATGGGTTTAAGTAACATATTAATcagaaaatttga
catttttctgTCTGTCTAGTTTTCAAGTAGGTCAAAATCACAGTTTGAAT
TTGAAGATTAAAGAAATAACATGCAGTCAAGATGCAGCATGAGAGCGTTA
TCCTTATACTTTTCACGATAACATCACTGAAAGCATGTCCATTTTTGTGT
AACTGCATACTTACTTGGAACCAGAACAACCAGCTTCAAAATGTTTGGCA
TTGTGGCCAACAAGGATTGACAGCAGACAAATTAAACTTGATAACAAGAG
ACCATAACACAACAGATGTTGATGTGCTTTATTTAACAAGcaataaattg
aaagatttCAATGGGAATAAACTGAAAGGGTTTACAACTTTGAAAACTCT
TCATTTGGGTGAAAATCAGTTGAGTATCATCCCTACGTCAATCTGTCAAG
CTTTGCCACAACTGGAAGTTCTAGGTCTGGAGAATAACACCATTAGTGCA
ATAACACCAGAGTCGTTTTCGGACTGTAATAAACTACGTCATTTGAAACT
GTCTGGAAATGAAGTCCATTTGCTACTTGAATCTACTTTCTCTGATACAA
AGAACCTGGAAGACTTGGACTTGAGTCAAAATGCAATACACTCAATCTAT
TCCGACAGTTTGAAGGGTTTATTAAAATTAACCAGGATTGATTTGTCAGG
AAACAATATTCAGAAAATTCCTGATAATCTGTTTTCTAGTTCTCATGATG
TCCAATGGGTTGATTTATCACACAATCAATTAACCTCTTTCAGCAGAGAA
TTGACAAAACATTTATTACACGTGGAAGAGCTATTTCTTGCAAATAATGC
TTTGGATACTTTAGGAAATGGTGTTTTTGATGGTATGAAACTAAAAGTTT
TGGATCTTTCGAACAATGAGATTGTATCTCTTGTTCCAAGTATGTTTGGT
GAATCAGTCATTGAAGATTTGCTTCTTGATGGCAATCCTTTACAATGTAA
TTGCAATCTTAAGAACATTCTTTCTGATGGAGGAATGAATCCAATAAAAG
CCAGTGGCTTATGCACTTTTCCAAAGACTGTATTATCTGACAATACAGAA
AGAGTGTTGAAAATTGCAAATCTAACAAAGAAATTAAATTGTGATAATGa
ttgtttcaaaaatacttCTTGCCAAAATGATGGTCAATGTATGCttgata
ttgataaaaatactGAAATTTACTCATATCAATGTCGTTGTAGCTCTGGT
TATCATGGGAACTATTGTGAGTTAAAGAAGAAAACATCTAAAACTCTCTT
GGTCATTGTCGTTATTGTGGTAATTCCAGTTCTGGTTCTTATTGTCGGTT
TGATTTTGTTTCGCAGACAGTGTCGGAGGAAAAGAAGACATAGAGGGGAT
ATGCTACCATTAACTGATGACGATTTTGCGCTGTAAATTCTCGAACTGAA
TTTGTCTCCTATTCTCTTAATCTAATCAGATTagaaataatttcaaatct
tAATCGCTAGAAAATTTGTCAGCAAAAAATTTGTCACTTTTTACCGTCGG
CAATTAGTTTTTGTCAacgattttttttcacattttgactCAGTGTGTCA
CAATCAAATAATTGATAATGTATATTcatattataattttttgtatcaat
attatattattttctaATCTTATTTATATTGAATTGTTCTATTATTAATT
TGATAATGTTTGTGATATTTATTAATTTGCATTAAATGTATTTGTTTATA
TAACCCTTTTTtctatttgaaaatttgttacTCCATGTTTTGAAATGGCA
TTTACTTCTAGGCTTTCTTTGTGACAATAGTGATTTGCATCCCTCTAATA
GTGAACCATTTAAATTTTATAAGTCTTAAAAATGGCAACATAATCATCAC
AGCTCTTTCgatattattaaaaaataataaattttgttaaaatatatgaa
tatatttatttgtaAACAGTTTGTAGTTGGTGATAAGAATTTTGTGTAAA
GTTAACGAAATGCTTTTCTTTCATCATCTATACATTCTTCTAGTCCAAAT
ATAAGCTAGTCTAGTCGACCTTTTATACTTTTTCTCTTGCTCGCTGTTAG
TGAAACAAAATTTCCTTTCCATTTTTTCTCAACAGAATTAGTGAACAATT
AGAACATAAGAACATTGTTTTATTATGAATAATCTTTTACGGAATGTATT
ACCTGTTCTTCTCGAAAATGCTTTCTTGCAAGATGAATCAGATACCAACG
ATGATGAAGACCTCCCTCCTCTTGTGAGAAAGGAACCAGTCACTGAAGCT
TCAGCTAATAGGGCTCCCCTACCGCCAGAACCAGTTTTGGAGGCCAAACC
AAGAGTGTCTCCCTTGTATCCTGTTTGCCACATGGATTTTGATGTGAACC
ATGATGATGTACCACCACTTCTTATTAGCAAAACCACTGGCAAGGTAGTG
ATATCAGAAACAAAGAATGAAAAAGGTAAACACGTTTCGGAAGATAGTGA
TAGCGAGAGTGAAAAAGAGGATATTGTttacaagaaattgaaaactcaAG
GCAAAGTTGTGGAAATCCCTGAAAAACTTGTCAAAGAAATACCTTATATT
GATACCCTTTTATCTGGAAGGTTCGCGATATCAGAGGAAGACGGTATTGT
CACATCTGATGAAATTGAtccaaaattattgaaaatattaatcagatatt
tgaatcaaaataaattATATACATTGCTAGCCTGTTTACCAGCTGATTGT
GATGCTTTTCAATTGTTTGAGTTGCTCAGTTTCCTAGCTATAAAACCACC
AATATCAATAACAAAGGAAAGCATCAAAGAACGTTTAATGGAAACACCAG
AGGCATCTGTCAGTTCCCAAGGTGAACTTGTTGAGTTTGCATTAGCTATT
TTTTACGCATACAACCTATTTGATTATCGTAAAGAAAAGAAACTACGAAA
CAAAATCTACGATACGTTTATGTACATTTTCAAAAGTGATGATTCAAGTT
TCAAACCCAGAGCCAAACACCATTTACTGGAATTAGTTAAAAAGTGTGTT
TTGTTGACAATAAAACAGTTTTAtaacattaaaaaattaaaggttTCGGA
TACTCTGGATAAATCAGATGAAGAGTCAGTAGGATCTTTGGAAGATGATG
ATTGGTTCGATGATTGTTGTGATTATATGTGTTATGATTCAGATGATGAC
ATGGCATATATGTTTGGGCACCATTTTGGTTTGGAAGATGTTTACGATAA
TTTCTATTATTGTGATTCTGATGATTTCTATGACAGTGATGACgacatgt
tttaattttcagaacAGCAAAGCAAAGCTACTGTTTACCTACTTTTGAAA
TAAGAAGTTCGTTTTGCAAAgagttttaatttatttcagataaaattata
ttttagcatTCTTGATATCAGTTTAAGAGCTGGAATTATGATTTTCTTAA
ACAAGGCTGATAAAATTCTGGATATTATTCTCATCTTTATAAATGCAG
Run BLAST on NCBI

protein sequence of TCONS_00062021-protein

>TCONS_00062021-protein ID=TCONS_00062021-protein|Name=TCONS_00062021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MQHESVILILFTITSLKACPFLCNCILTWNQNNQLQNVWHCGQQGLTADK
LNLITRDHNTTDVDVLYLTSNKLKDFNGNKLKGFTTLKTLHLGENQLSII
PTSICQALPQLEVLGLENNTISAITPESFSDCNKLRHLKLSGNEVHLLLE
STFSDTKNLEDLDLSQNAIHSIYSDSLKGLLKLTRIDLSGNNIQKIPDNL
FSSSHDVQWVDLSHNQLTSFSRELTKHLLHVEELFLANNALDTLGNGVFD
GMKLKVLDLSNNEIVSLVPSMFGESVIEDLLLDGNPLQCNCNLKNILSDG
GMNPIKASGLCTFPKTVLSDNTERVLKIANLTKKLNCDNDCFKNTSCQND
GQCMLDIDKNTEIYSYQCRCSSGYHGNYCELKKKTSKTLLVIVVIVVIPV
LVLIVGLILFRRQCRRKRRHRGDMLPLTDDDFAL
Run BLAST on NCBI

transcript from alignment at scaffold_361:824599..830443-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062021 ID=TCONS_00062021|Name=TCONS_00062021|organism=Clytia hemisphaerica|type=transcript|length=5845bp|location=Sequence derived from alignment at scaffold_361:824599..830443- (Clytia hemisphaerica)
ATTTAGAGAAGTTCATTTCATGCCAAATGTTGCTTTTCCATGTCTCTTTT
TGATTGCTTCACTGTTGAAAAGCAAAGCAAGTGGTCTGGCGACGAGAAAG
GTTTATTTCTCAGGTTTTTCTTTCTTTGGTGGTCCGCACATCCCTTGAAT
TTTTATAAAAAGGGGGTTTTTTCTGCTGCATGTATGTTAAGGAGATAATT
AATCATGGGAATCTTTCATTGTTGTTACTTATTTTTATTATGAATGTAAT
GCGTGCTGGAGCCGAAGGTAAAGATGGCCTTAAGGATCGAATTATCTCAT
TGTTTTGCAATTTGCAATGAATTTTTGGATTACCTACAAGCTAGAAATTG
AAAATTGATCCTTTTCCGGATGCAAAATCATGCTTACCAAAAAATTGTGA
TGTACTTTCTATCCCTAATTTTGATGCCTGTGGCCTACAAAACAGAGATG
AAGGTTGAACATCTTGAGTTTTTTATCTTAAAGGTTTTATGGCAACGTCG
TCAATTTAGGAAGGGGGGTCATGGGTTCATAAACAAAACATTTTCTGTGA
CAAGTTTGAGTTTGAATGGCTCCCATTATTTATAAAAGGCAATCACAAAT
CTTCAATTAGGAAAAAGACTCTTGAAATGAATTTACATACAAGGGCATGA
ACAAAAGTAAAAATGAATAAATTTATTCAGATCCTGGTACATTATACTTT
AGGCGTACAAACTTTTGCGAGCAGAAACTTTTGCTATTTTTGTATTTTGG
TCTTTTACGCGAAAGTAAATGTCCTTGAAAATTCTTAACAGGGCAATTCG
CAAAAGTTATAATGCTCACGAAAAATTCTCAAAAAAATTGGAAATCTACA
AAACCTTGAAATTGTAATAAATATTAAATATTCGGCATATTATTATCCTT
TAGTGCCTTTTTAAAGTTGCAGAGCAACCGTCTTTAGCAAATTTTAAAGG
AATATTTTTCACTTTCAAGTTAATTTTTATTCGAAAATTCTAATTTTTAT
CCAACGATTCGCAAAAGTTTATGTTTGCGAAATATATTTTTTCCTCTAAT
TCGTGAAACTAAATATCTCAAATTTCGTGATTTTTCGACCTCGCAAAAGT
TTCTGCTCGCAAAAGTTTGTACGCCTAAAGTAAACTATGAAAGTCTGGCG
TGCATGTTCAGCATGCCAATGATGCAGGCGCTGTGTTTGCCTAAACTTGT
GCTGCACTTGACTTTGGACAAGTGCCGCACCCAAGATCTGGGGCTACTGT
GTCATGAATATAAGCAAGGGTTTTTGCAAGAAAATTTCCCTAGTTTTCTA
ATTGGAAAAAGAGTGTGCCTAATTTTCCCATTCTTGGAAAAACATTTCCC
TGATTTGTGATTTTTGGAAGAAAGTTTACCTTAGTTGCCAATTTTTTGAA
AAGATTTCTGATTCCACTTAAAAGTAATAATAATCTACAATATATATGTA
AGCCCTCCTTCAAACTATCCCCCCTTCCTTGCTATTCCCCTCCCTTTTTC
ATGAAAATTTCTGACCGCCCCCCTTTTCGGAACTTTTCGGAAGGTGTTAA
GGGGATGCTTTGGAAATGTACAGGTAGACAACATTTGCATTTCTGCCTTT
ATTCAATTGGAAAGAATTTCATCATAATGTTATGACATTGAAACATAGCT
GGTTTGGTTTGAAACAGCATTTTTTTCAATACACTTGGTTTTCATAGGAT
TTTTTTCAGATTTTCACCAGATGGGAGGTGAGAGCTACCGGGTGATATCT
TTCATGTTGAGCTTGATTTCTTCCTTTGCGGATAAAGGATGAGGGATCTT
TTTAGGGTTCCAGGTGGATTTATCCGGTATCCAAGCATTTTCCCCAAGAA
AAGGTCTGGATATAGCAGGAGATCTGTTTTAGGACAAGAAAGATTTTTTT
TAGTTAATTGGAAACAATCTTACTATTATCAGCCCTCAATAGATTTTTTT
GGATGAATTGAAATGTTATTTTGCAAATAAATTAGAAAAAAAAGCTCTCT
AATTTTCAACTTTTTCTTCCGGTTTTGTCATTTGTTTATAGATGTGTGTA
GATTTGTTCAAGAATTGTGTTGGACATTTTTAATAATTTATACACTTTTT
GATTCAGTCCTCTTAAAATATTCATCATGTGATTTGTTAAGGTTATTCAT
ATCTTGAATCATAGAATGGGTTTAAGTAACATATTAATCAGAAAATTTGA
CATTTTTCTGTCTGTCTAGTTTTCAAGTAGGTCAAAATCACAGTTTGAAT
TTGAAGATTAAAGAAATAACATGCAGTCAAGATGCAGCATGAGAGCGTTA
TCCTTATACTTTTCACGATAACATCACTGAAAGCATGTCCATTTTTGTGT
AACTGCATACTTACTTGGAACCAGAACAACCAGCTTCAAAATGTTTGGCA
TTGTGGCCAACAAGGATTGACAGCAGACAAATTAAACTTGATAACAAGAG
ACCATAACACAACAGATGTTGATGTGCTTTATTTAACAAGCAATAAATTG
AAAGATTTCAATGGGAATAAACTGAAAGGGTTTACAACTTTGAAAACTCT
TCATTTGGGTGAAAATCAGTTGAGTATCATCCCTACGTCAATCTGTCAAG
CTTTGCCACAACTGGAAGTTCTAGGTCTGGAGAATAACACCATTAGTGCA
ATAACACCAGAGTCGTTTTCGGACTGTAATAAACTACGTCATTTGAAACT
GTCTGGAAATGAAGTCCATTTGCTACTTGAATCTACTTTCTCTGATACAA
AGAACCTGGAAGACTTGGACTTGAGTCAAAATGCAATACACTCAATCTAT
TCCGACAGTTTGAAGGGTTTATTAAAATTAACCAGGATTGATTTGTCAGG
AAACAATATTCAGAAAATTCCTGATAATCTGTTTTCTAGTTCTCATGATG
TCCAATGGGTTGATTTATCACACAATCAATTAACCTCTTTCAGCAGAGAA
TTGACAAAACATTTATTACACGTGGAAGAGCTATTTCTTGCAAATAATGC
TTTGGATACTTTAGGAAATGGTGTTTTTGATGGTATGAAACTAAAAGTTT
TGGATCTTTCGAACAATGAGATTGTATCTCTTGTTCCAAGTATGTTTGGT
GAATCAGTCATTGAAGATTTGCTTCTTGATGGCAATCCTTTACAATGTAA
TTGCAATCTTAAGAACATTCTTTCTGATGGAGGAATGAATCCAATAAAAG
CCAGTGGCTTATGCACTTTTCCAAAGACTGTATTATCTGACAATACAGAA
AGAGTGTTGAAAATTGCAAATCTAACAAAGAAATTAAATTGTGATAATGA
TTGTTTCAAAAATACTTCTTGCCAAAATGATGGTCAATGTATGCTTGATA
TTGATAAAAATACTGAAATTTACTCATATCAATGTCGTTGTAGCTCTGGT
TATCATGGGAACTATTGTGAGTTAAAGAAGAAAACATCTAAAACTCTCTT
GGTCATTGTCGTTATTGTGGTAATTCCAGTTCTGGTTCTTATTGTCGGTT
TGATTTTGTTTCGCAGACAGTGTCGGAGGAAAAGAAGACATAGAGGGGAT
ATGCTACCATTAACTGATGACGATTTTGCGCTGTAAATTCTCGAACTGAA
TTTGTCTCCTATTCTCTTAATCTAATCAGATTAGAAATAATTTCAAATCT
TAATCGCTAGAAAATTTGTCAGCAAAAAATTTGTCACTTTTTACCGTCGG
CAATTAGTTTTTGTCAACGATTTTTTTTCACATTTTGACTCAGTGTGTCA
CAATCAAATAATTGATAATGTATATTCATATTATAATTTTTTGTATCAAT
ATTATATTATTTTCTAATCTTATTTATATTGAATTGTTCTATTATTAATT
TGATAATGTTTGTGATATTTATTAATTTGCATTAAATGTATTTGTTTATA
TAACCCTTTTTTCTATTTGAAAATTTGTTACTCCATGTTTTGAAATGGCA
TTTACTTCTAGGCTTTCTTTGTGACAATAGTGATTTGCATCCCTCTAATA
GTGAACCATTTAAATTTTATAAGTCTTAAAAATGGCAACATAATCATCAC
AGCTCTTTCGATATTATTAAAAAATAATAAATTTTGTTAAAATATATGAA
TATATTTATTTGTAAACAGTTTGTAGTTGGTGATAAGAATTTTGTGTAAA
GTTAACGAAATGCTTTTCTTTCATCATCTATACATTCTTCTAGTCCAAAT
ATAAGCTAGTCTAGTCGACCTTTTATACTTTTTCTCTTGCTCGCTGTTAG
TGAAACAAAATTTCCTTTCCATTTTTTCTCAACAGAATTAGTGAACAATT
AGAACATAAGAACATTGTTTTATTATGAATAATCTTTTACGGAATGTATT
ACCTGTTCTTCTCGAAAATGCTTTCTTGCAAGATGAATCAGATACCAACG
ATGATGAAGACCTCCCTCCTCTTGTGAGAAAGGAACCAGTCACTGAAGCT
TCAGCTAATAGGGCTCCCCTACCGCCAGAACCAGTTTTGGAGGCCAAACC
AAGAGTGTCTCCCTTGTATCCTGTTTGCCACATGGATTTTGATGTGAACC
ATGATGATGTACCACCACTTCTTATTAGCAAAACCACTGGCAAGGTAGTG
ATATCAGAAACAAAGGTATTAATTATAATACTTTTTTTGTTGTTGTTGTT
TTCTTTACAGTTCATTGGCTAAGGTTTACACACTATTCCTTTCTTTGCTT
TACAATTTGTTGGTTATGAATATGTTAGCCAGGGTTTTTTTAAATCTAAG
TGCCTTTTAATTTGAAATTAACTAAACTCAATTTTTATGTTTTTTTGTTT
TCTTCTTGACAGAATGAAAAAGGTAAACACGTTTCGGAAGATAGTGATAG
CGAGAGTGAAAAAGAGGATATTGTTTACAAGAAATTGAAAACTCAAGGCA
AAGTTGTGGAAATCCCTGAAAAACTTGTCAAAGAAATACCTTATATTGAT
ACCCTTTTATCTGGAAGGTTCGCGATATCAGAGGAAGACGGTATTGTCAC
ATCTGATGAAATTGATCCAAAATTATTGAAAATATTAATCAGATATTTGA
ATCAAAATAAATTATATACATTGCTAGCCTGTTTACCAGCTGATTGTGAT
GCTTTTCAATTGTTTGAGTTGCTCAGTTTCCTAGCTATAAAACCACCAAT
ATCAATAACAAAGGAAAGCATCAAAGAACGTTTAATGGAAACACCAGAGG
CATCTGTCAGTTCCCAAGGTGAACTTGTTGAGTTTGCATTAGCTATTTTT
TACGCATACAACCTATTTGATTATCGTAAAGAAAAGAAACTACGAAACAA
AATCTACGATACGTTTATGTACATTTTCAAAAGTGATGATTCAAGTTTCA
AACCCAGAGCCAAACACCATTTACTGGAATTAGTTAAAAAGTGTGTTTTG
TTGACAATAAAACAGTTTTATAACATTAAAAAATTAAAGGTTTCGGATAC
TCTGGATAAATCAGATGAAGAGTCAGTAGGATCTTTGGAAGATGATGATT
GGTTCGATGATTGTTGTGATTATATGTGTTATGATTCAGATGATGACATG
GCATATATGTTTGGGCACCATTTTGGTTTGGAAGATGTTTACGATAATTT
CTATTATTGTGATTCTGATGATTTCTATGACAGTGATGACGACATGTTTT
AATTTTCAGAACAGCAAAGCAAAGCTACTGTTTACCTACTTTTGAAATAA
GAAGTTCGTTTTGCAAAGAGTTTTAATTTATTTCAGATAAAATTATATTT
TAGCATTCTTGATATCAGTTTAAGAGCTGGAATTATGATTTTCTTAAACA
AGGCTGATAAAATTCTGGATATTATTCTCATCTTTATAAATGCAG

Coding sequence (CDS) from alignment at scaffold_361:824599..830443-

>TCONS_00062021 ID=TCONS_00062021|Name=TCONS_00062021|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_361:824599..830443- (Clytia hemisphaerica)
ATGCAGCATGAGAGCGTTATCCTTATACTTTTCACGATAACATCACTGAA
AGCATGTCCATTTTTGTGTAACTGCATACTTACTTGGAACCAGAACAACC
AGCTTCAAAATGTTTGGCATTGTGGCCAACAAGGATTGACAGCAGACAAA
TTAAACTTGATAACAAGAGACCATAACACAACAGATGTTGATGTGCTTTA
TTTAACAAGCAATAAATTGAAAGATTTCAATGGGAATAAACTGAAAGGGT
TTACAACTTTGAAAACTCTTCATTTGGGTGAAAATCAGTTGAGTATCATC
CCTACGTCAATCTGTCAAGCTTTGCCACAACTGGAAGTTCTAGGTCTGGA
GAATAACACCATTAGTGCAATAACACCAGAGTCGTTTTCGGACTGTAATA
AACTACGTCATTTGAAACTGTCTGGAAATGAAGTCCATTTGCTACTTGAA
TCTACTTTCTCTGATACAAAGAACCTGGAAGACTTGGACTTGAGTCAAAA
TGCAATACACTCAATCTATTCCGACAGTTTGAAGGGTTTATTAAAATTAA
CCAGGATTGATTTGTCAGGAAACAATATTCAGAAAATTCCTGATAATCTG
TTTTCTAGTTCTCATGATGTCCAATGGGTTGATTTATCACACAATCAATT
AACCTCTTTCAGCAGAGAATTGACAAAACATTTATTACACGTGGAAGAGC
TATTTCTTGCAAATAATGCTTTGGATACTTTAGGAAATGGTGTTTTTGAT
GGTATGAAACTAAAAGTTTTGGATCTTTCGAACAATGAGATTGTATCTCT
TGTTCCAAGTATGTTTGGTGAATCAGTCATTGAAGATTTGCTTCTTGATG
GCAATCCTTTACAATGTAATTGCAATCTTAAGAACATTCTTTCTGATGGA
GGAATGAATCCAATAAAAGCCAGTGGCTTATGCACTTTTCCAAAGACTGT
ATTATCTGACAATACAGAAAGAGTGTTGAAAATTGCAAATCTAACAAAGA
AATTAAATTGTGATAATGATTGTTTCAAAAATACTTCTTGCCAAAATGAT
GGTCAATGTATGCTTGATATTGATAAAAATACTGAAATTTACTCATATCA
ATGTCGTTGTAGCTCTGGTTATCATGGGAACTATTGTGAGTTAAAGAAGA
AAACATCTAAAACTCTCTTGGTCATTGTCGTTATTGTGGTAATTCCAGTT
CTGGTTCTTATTGTCGGTTTGATTTTGTTTCGCAGACAGTGTCGGAGGAA
AAGAAGACATAGAGGGGATATGCTACCATTAACTGATGACGATTTTGCGC
TGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038875XLOC_038875Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062021-proteinTCONS_00062021-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062021-exon-scaffold_361-1575043694:825829..830443TCONS_00062021-exon-scaffold_361-1575043694:825829..830443Clytia hemisphaericaexon
TCONS_00062021-exon-scaffold_361-1575043694:824599..825631TCONS_00062021-exon-scaffold_361-1575043694:824599..825631Clytia hemisphaericaexon
TCONS_00062021-exon-scaffold_361-1510915933:825829..830443TCONS_00062021-exon-scaffold_361-1510915933:825829..830443Clytia hemisphaericaexon
TCONS_00062021-exon-scaffold_361-1510915933:824599..825631TCONS_00062021-exon-scaffold_361-1510915933:824599..825631Clytia hemisphaericaexon
TCONS_00062021-exon-scaffold_361-1491911889:825829..830443TCONS_00062021-exon-scaffold_361-1491911889:825829..830443Clytia hemisphaericaexon
TCONS_00062021-exon-scaffold_361-1491911889:824599..825631TCONS_00062021-exon-scaffold_361-1491911889:824599..825631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:824599..830443 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.8204	30.2647	12.2428	8.94349	6.72926	4.22041	4.60399	4.67135	3.66628	3.21362	3.78668	2.84868	2.67229	2.50039	2.36308	1.85027	4.39232	4.55217	2.96079	3.19258	6.17421	5.90624	15.6834	15.9855	7.12234	6.9378	4.12324	2.59635	6.35659	6.87467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00062021 vs. Swiss-Prot (Human)
Match: CPN2 (Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 7.286e-20
Identity = 75/261 (28.74%), Postives = 121/261 (46.36%), Query Frame = 2 
Query: 2468 VDVLYLTSNKLKDFNGNKLKGFTTLKTLHLGENQLSIIPTSICQALPQLEVLGLENNTISAITPESFSDCNKLRHLKLSGNEVHLLLESTFSDTKNLEDLDLSQNAIHSIYSDSLKGLLKLTRIDLSGNNIQKIPDNLFSSSHDVQWVDLSHNQLTSFSRELTKHLLHVEELFLANNALDTLGNGVF-DGMKLKVLDLSNNEIVSLVPSMF-------------------GESVIE------DLLLDGNPLQCNCNLKNIL 3172
            ++ L+L  N+L+       +  T LKTL+L +N L+ +P  +   L  L+ L L NN +S +    F     L+ L L  N +  L    FS    LE L L +NAI  +       L  LT + L  N ++ +P  LF+ +  +  + L+HNQL + +     HL ++  L L+ NA+  L  G+F D  +L  L L +N + +L P++F                    E + +      +L L GNP QC+C+L  + 
Sbjct:  147 LESLHLQGNQLQALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNISELPPQVFSQLFCLERLWLQRNAITHLPLSIFASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLALHGNPWQCDCHLAYLF 407
The following BLAST results are available for this feature:
BLAST of TCONS_00062021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPN27.286e-2028.74Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CP... [more]
back to top