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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062179 ID=TCONS_00062179|Name=TCONS_00062179|organism=Clytia hemisphaerica|type=transcript|length=1605bp
AACTATTTTTATGAGTATTGagcttttgtgattttttgaaagtgtaGTAG
TGAAATTTTGTGTGTTTTTGGGCTTAAAAATGATCATTGAAGACATTAAT
CTTGCTAGACAGCGTATCGCACAAGACATTGTTAcaagtttcaaaaagtt
tttactATATGGTCTCATTCTAACCATTATTGTTGTTTCTGGTGCGATAG
TTTTCTTTTATACCGAACAATGTTGGTCTAACGTACCACAAGAATATAGC
CAAGAATCTTCAACTCAAAAACTCTGTAATGATATTCTCAAAATCAACGA
AACACACTCAGATGATCAAAATGTCATTGCAGCCATATCGAATATTACTG
TATCTTGTTTGAAGCATAAAAACTACAAGCAACGACAAAAGTTATCTGAT
TTAGGTACAAGAAAGACTTGCACATTAGATAGTATTGGTTTTGCATACTG
GATGGGTTATGTCTTCACCATTGTTTTCACAATCGGTTATGGTCGTGTTG
TTACAAACACAACTGCTGGTCGAGCACTGACCATGGTTTATGCTACCATC
TCTATCCCTATCGCATCCTTAACAACCATTTACTGTGCCAAGACTGTTGA
CAACTGTGTTAAATACATGGTCCTCATGTTTGAGCAACGTGCTTTAAAAC
GTCAAAAGGTTGTTTGGTTCACCAGAAAATGTGCTTGCATTGAAATGGTT
TATTTAGTGTTTATGATTATGTTTTACGCTTGGCGCCAACATGATACCAT
ATTACGTAATTATACTTTCTTTGATGCTGTTTATCACGTGTTTATTACAG
TGACCACTATCGGGTTTGGTGACCTTGATCCAGACCAGAGTGGAAGGACA
TCACAGACAGGTGTTCAAATGGTGGCCATCTTGATGGTAGAAATTATAGT
ATTTTTCATCACTTTCTCATTGATGGGAGCTTTCATAAGTGGTATAGTTT
CAACTGAGGAgggaaaaaataacaaagaagaacaaaggaaattgaaaAGT
TCATCAAATGATGTTATAGAGAAATATACTGCTGTTGCCTTGTGAATGGC
CAATGTTATCACCTAAACCGAAGTATCTAAAAAGGGTGACTCCTTTATAA
CATAGAGTAACGAGGGGGTTACAGGGAAGGGAATCTCGAAAACATTCCGA
GTACCCCTGGTTTTTGAAATGCAATTTCGTTGAAAAGAACAATGTTTACC
CCTTGTAAGATGCTGGTGGAAGATGGTATTACTGTAGTGTATTTAGGAAC
TACGTTTGAACTTCCATGAACTCAAACACTCTAACCGAACCGAGTTTGTT
CAAGTTATGGATATATCGTCAAGTAACGCTGACTGGCTTTTTTAGGGTCA
GAGATGGAGCATTAAATGTGAATGTGATCCCATGTTGATTTGTTATATAC
TTTCAAACTACGAGACTTTATGACCGTGAGGgagtcgattttttattttt
cgtaattttggaccCTTTCATAGACTCTAATGCTGTTTTAAGGTTTTTGT
ACCCCAATGAGAGATTTTTAAGGGTTAAGAAAAGGGACTTTTATTGCTCA
CATCCGACACCCATCTTACCTAAATACCCCCTCCGGTGGATTCATATTTT
GTTTC Run BLAST on NCBI protein sequence of TCONS_00062179-protein >TCONS_00062179-protein ID=TCONS_00062179-protein|Name=TCONS_00062179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MIIEDINLARQRIAQDIVTSFKKFLLYGLILTIIVVSGAIVFFYTEQCWS
NVPQEYSQESSTQKLCNDILKINETHSDDQNVIAAISNITVSCLKHKNYK
QRQKLSDLGTRKTCTLDSIGFAYWMGYVFTIVFTIGYGRVVTNTTAGRAL
TMVYATISIPIASLTTIYCAKTVDNCVKYMVLMFEQRALKRQKVVWFTRK
CACIEMVYLVFMIMFYAWRQHDTILRNYTFFDAVYHVFITVTTIGFGDLD
PDQSGRTSQTGVQMVAILMVEIIVFFITFSLMGAFISGIVSTEEGKNNKE
EQRKLKSSSNDVIEKYTAVAL Run BLAST on NCBI transcript from alignment at scaffold_362:344844..347273+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062179 ID=TCONS_00062179|Name=TCONS_00062179|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at scaffold_362:344844..347273+ (Clytia hemisphaerica)
AACTATTTTTATGAGTATTGagcttttgtgattttttgaaagtgtaGTAG
TGAAATTTTGTGTGTTTTTGGGCTTAAAAATGATCATTGAAGACATTAAT
CTTGCTAGACAGCGTATCGCACAAGACATTGTTAcaagtttcaaaaagtt
tttactATATGGTCTCATTCTAACCATTATTGTTGTTTCTGGTGCGATAG
TTTTCTTTTATACCGAACAATGTTGGTCTAACGTACCACAAGAATATAGC
CAAGAATCTTCAACTCAAAAACTCTGTAATGATATTCTCAAAATCAACGA
AACACACTCAGATGATCAAAATGTCATTGCAGCCATATCGAATATTACTG
TATCTTGTTTGAAGCATAAAAACTACAAGCAACGACAAAAGTTATCTGAT
TTAGGTACAAGAAAGACTTGCACATTAGATAGTATTGGTTTTGCATACTG
GATGGGTTATGTCTTCACCATTGTTTTCACAATCGGTAAGTTTGGTAGAC
TCCTGGGAGGGCACGCAACGTCTTAGCAACGTTCATTCaagtacaccttt
tcgaccgtagctgtcaattgccgcacgggcatttttttgtccgctttatc
ccactaaaaccgtcccagtccttttttcgcacctatagacaatagaaaaa
tgtgtcgaaaaaggattggatcgattttagtgggataaaagtGGCACACG
CCTGactgcgcgactacggtcgaaaaggtgtatttcggAGTAAGGTCTTA
CAGATCTTCAGATCTTCGTAAGAGATGAAGCATAAGATCTTGTAaaaacc
cctgtgtcacagacccgctgggacccccgtcccactggaaaattttgccT
AAATTTTATTCCCAGTGAACAAAATGCCCTACAATTTTCGGTCACACTGG
GGAATTGACTTTGTActtatccccattgaaattcaatacaaaaactaaaa
aattacactccaaaaccatccccactggatattTTAAGCTTGGAAACact
agaatttttatccccatttggatttcaatcgaaatttttaccccctttct
tggaaaaagtccgaccggggctgtgagacagggtgttTGCAAAAACTTAA
CTTCCTTCAAAAGATCTTGCGCATTTCATCTTGCTTGTTCACCTTGTAAG
ATAACTTTTATGACGGTGTCTTATAAGATCTTAATAATATTTTAGAGCAA
GTGTCTTGTACTTTTACCTCGCGAAGATTATCATATTATGTGTGAAAAGG
GTTAACTTAGTATAATACATAATCTCCAATTAGCTggatcttttattttt
ttttcaccagGTTATGGTCGTGTTGTTACAAACACAACTGCTGGTCGAGC
ACTGACCATGGTTTATGCTACCATCTCTATCCCTATCGCATCCTTAACAA
CCATTTACTGTGCCAAGACTGTTGACAACTGTGTTAAATACATGGTCCTC
ATGTTTGAGCAACGTGCTTTAAAACGTCAAAAGGTTGTTTGGTTCACCAG
AAAATGTGCTTGCATTGAAATGGTTTATTTAGTGTTTATGATTATGTTTT
ACGCTTGGCGCCAACATGATACCATATTACGTAATTATACTTTCTTTGAT
GCTGTTTATCACGTGTTTATTACAGTGACCACTATCGGGTTTGGTGACCT
TGATCCAGACCAGAGTGGAAGGACATCACAGACAGGTGTTCAAATGGTGG
CCATCTTGATGGTAGAAATTATAGTATTTTTCATCACTTTCTCATTGATG
GGAGCTTTCATAAGTGGTATAGTTTCAACTGAGGAgggaaaaaataacaa
agaagaacaaaggaaattgaaaAGTTCATCAAATGATGTTATAGAGAAAT
ATACTGCTGTTGCCTTGTGAATGGCCAATGTTATCACCTAAACCGAAGTA
TCTAAAAAGGGTGACTCCTTTATAACATAGAGTAACGAGGGGGTTACAGG
GAAGGGAATCTCGAAAACATTCCGAGTACCCCTGGTTTTTGAAATGCAAT
TTCGTTGAAAAGAACAATGTTTACCCCTTGTAAGATGCTGGTGGAAGATG
GTATTACTGTAGTGTATTTAGGAACTACGTTTGAACTTCCATGAACTCAA
ACACTCTAACCGAACCGAGTTTGTTCAAGTTATGGATATATCGTCAAGTA
ACGCTGACTGGCTTTTTTAGGGTCAGAGATGGAGCATTAAATGTGAATGT
GATCCCATGTTGATTTGTTATATACTTTCAAACTACGAGACTTTATGACC
GTGAGGgagtcgattttttatttttcgtaattttggaccCTTTCATAGAC
TCTAATGCTGTTTTAAGGTTTTTGTACCCCAATGAGAGATTTTTAAGGGT
TAAGAAAAGGGACTTTTATTGCTCACATCCGACACCCATCTTACCTAAAT
ACCCCCTCCGGTGGATTCATATTTTGTTTC Coding sequence (CDS) from alignment at scaffold_362:344844..347273+ >TCONS_00062179 ID=TCONS_00062179|Name=TCONS_00062179|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_362:344844..347273+ (Clytia hemisphaerica)
ATGATCATTGAAGACATTAATCTTGCTAGACAGCGTATCGCACAAGACAT
TGTTAcaagtttcaaaaagtttttactATATGGTCTCATTCTAACCATTA
TTGTTGTTTCTGGTGCGATAGTTTTCTTTTATACCGAACAATGTTGGTCT
AACGTACCACAAGAATATAGCCAAGAATCTTCAACTCAAAAACTCTGTAA
TGATATTCTCAAAATCAACGAAACACACTCAGATGATCAAAATGTCATTG
CAGCCATATCGAATATTACTGTATCTTGTTTGAAGCATAAAAACTACAAG
CAACGACAAAAGTTATCTGATTTAGGTACAAGAAAGACTTGCACATTAGA
TAGTATTGGTTTTGCATACTGGATGGGTTATGTCTTCACCATTGTTTTCA
CAATCGGTTATGGTCGTGTTGTTACAAACACAACTGCTGGTCGAGCACTG
ACCATGGTTTATGCTACCATCTCTATCCCTATCGCATCCTTAACAACCAT
TTACTGTGCCAAGACTGTTGACAACTGTGTTAAATACATGGTCCTCATGT
TTGAGCAACGTGCTTTAAAACGTCAAAAGGTTGTTTGGTTCACCAGAAAA
TGTGCTTGCATTGAAATGGTTTATTTAGTGTTTATGATTATGTTTTACGC
TTGGCGCCAACATGATACCATATTACGTAATTATACTTTCTTTGATGCTG
TTTATCACGTGTTTATTACAGTGACCACTATCGGGTTTGGTGACCTTGAT
CCAGACCAGAGTGGAAGGACATCACAGACAGGTGTTCAAATGGTGGCCAT
CTTGATGGTAGAAATTATAGTATTTTTCATCACTTTCTCATTGATGGGAG
CTTTCATAAGTGGTATAGTTTCAACTGAGGAgggaaaaaataacaaagaa
gaacaaaggaaattgaaaAGTTCATCAAATGATGTTATAGAGAAATATAC
TGCTGTTGCCTTGTGAATGATCATTGAAGACATTAATCTTGCTAGACAGC
GTATCGCACAAGACATTGTTAcaagtttcaaaaagtttttactATATGGT
CTCATTCTAACCATTATTGTTGTTTCTGGTGCGATAGTTTTCTTTTATAC
CGAACAATGTTGGTCTAACGTACCACAAGAATATAGCCAAGAATCTTCAA
CTCAAAAACTCTGTAATGATATTCTCAAAATCAACGAAACACACTCAGAT
GATCAAAATGTCATTGCAGCCATATCGAATATTACTGTATCTTGTTTGAA
GCATAAAAACTACAAGCAACGACAAAAGTTATCTGATTTAGGTACAAGAA
AGACTTGCACATTAGATAGTATTGGTTTTGCATACTGGATGGGTTATGTC
TTCACCATTGTTTTCACAATCGGTTATGGTCGTGTTGTTACAAACACAAC
TGCTGGTCGAGCACTGACCATGGTTTATGCTACCATCTCTATCCCTATCG
CATCCTTAACAACCATTTACTGTGCCAAGACTGTTGACAACTGTGTTAAA
TACATGGTCCTCATGTTTGAGCAACGTGCTTTAAAACGTCAAAAGGTTGT
TTGGTTCACCAGAAAATGTGCTTGCATTGAAATGGTTTATTTAGTGTTTA
TGATTATGTTTTACGCTTGGCGCCAACATGATACCATATTACGTAATTAT
ACTTTCTTTGATGCTGTTTATCACGTGTTTATTACAGTGACCACTATCGG
GTTTGGTGACCTTGATCCAGACCAGAGTGGAAGGACATCACAGACAGGTG
TTCAAATGGTGGCCATCTTGATGGTAGAAATTATAGTATTTTTCATCACT
TTCTCATTGATGGGAGCTTTCATAAGTGGTATAGTTTCAACTGAGGAggg
aaaaaataacaaagaagaacaaaggaaattgaaaAGTTCATCAAATGATG
TTATAGAGAAATATACTGCTGTTGCCTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062179-exon-scaffold_362-1491911889:344844..345328 | TCONS_00062179-exon-scaffold_362-1491911889:344844..345328 | Clytia hemisphaerica | exon |
| TCONS_00062179-exon-scaffold_362-1510915933:344844..345328 | TCONS_00062179-exon-scaffold_362-1510915933:344844..345328 | Clytia hemisphaerica | exon |
| TCONS_00062179-exon-scaffold_362-1575043694:344844..345328 | TCONS_00062179-exon-scaffold_362-1575043694:344844..345328 | Clytia hemisphaerica | exon |
| TCONS_00062179-exon-scaffold_362-1491911889:346154..347273 | TCONS_00062179-exon-scaffold_362-1491911889:346154..347273 | Clytia hemisphaerica | exon |
| TCONS_00062179-exon-scaffold_362-1510915933:346154..347273 | TCONS_00062179-exon-scaffold_362-1510915933:346154..347273 | Clytia hemisphaerica | exon |
| TCONS_00062179-exon-scaffold_362-1575043694:346154..347273 | TCONS_00062179-exon-scaffold_362-1575043694:346154..347273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:344844..347273 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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