TCONS_00062179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062179
Unique NameTCONS_00062179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062179 ID=TCONS_00062179|Name=TCONS_00062179|organism=Clytia hemisphaerica|type=transcript|length=1605bp
AACTATTTTTATGAGTATTGagcttttgtgattttttgaaagtgtaGTAG
TGAAATTTTGTGTGTTTTTGGGCTTAAAAATGATCATTGAAGACATTAAT
CTTGCTAGACAGCGTATCGCACAAGACATTGTTAcaagtttcaaaaagtt
tttactATATGGTCTCATTCTAACCATTATTGTTGTTTCTGGTGCGATAG
TTTTCTTTTATACCGAACAATGTTGGTCTAACGTACCACAAGAATATAGC
CAAGAATCTTCAACTCAAAAACTCTGTAATGATATTCTCAAAATCAACGA
AACACACTCAGATGATCAAAATGTCATTGCAGCCATATCGAATATTACTG
TATCTTGTTTGAAGCATAAAAACTACAAGCAACGACAAAAGTTATCTGAT
TTAGGTACAAGAAAGACTTGCACATTAGATAGTATTGGTTTTGCATACTG
GATGGGTTATGTCTTCACCATTGTTTTCACAATCGGTTATGGTCGTGTTG
TTACAAACACAACTGCTGGTCGAGCACTGACCATGGTTTATGCTACCATC
TCTATCCCTATCGCATCCTTAACAACCATTTACTGTGCCAAGACTGTTGA
CAACTGTGTTAAATACATGGTCCTCATGTTTGAGCAACGTGCTTTAAAAC
GTCAAAAGGTTGTTTGGTTCACCAGAAAATGTGCTTGCATTGAAATGGTT
TATTTAGTGTTTATGATTATGTTTTACGCTTGGCGCCAACATGATACCAT
ATTACGTAATTATACTTTCTTTGATGCTGTTTATCACGTGTTTATTACAG
TGACCACTATCGGGTTTGGTGACCTTGATCCAGACCAGAGTGGAAGGACA
TCACAGACAGGTGTTCAAATGGTGGCCATCTTGATGGTAGAAATTATAGT
ATTTTTCATCACTTTCTCATTGATGGGAGCTTTCATAAGTGGTATAGTTT
CAACTGAGGAgggaaaaaataacaaagaagaacaaaggaaattgaaaAGT
TCATCAAATGATGTTATAGAGAAATATACTGCTGTTGCCTTGTGAATGGC
CAATGTTATCACCTAAACCGAAGTATCTAAAAAGGGTGACTCCTTTATAA
CATAGAGTAACGAGGGGGTTACAGGGAAGGGAATCTCGAAAACATTCCGA
GTACCCCTGGTTTTTGAAATGCAATTTCGTTGAAAAGAACAATGTTTACC
CCTTGTAAGATGCTGGTGGAAGATGGTATTACTGTAGTGTATTTAGGAAC
TACGTTTGAACTTCCATGAACTCAAACACTCTAACCGAACCGAGTTTGTT
CAAGTTATGGATATATCGTCAAGTAACGCTGACTGGCTTTTTTAGGGTCA
GAGATGGAGCATTAAATGTGAATGTGATCCCATGTTGATTTGTTATATAC
TTTCAAACTACGAGACTTTATGACCGTGAGGgagtcgattttttattttt
cgtaattttggaccCTTTCATAGACTCTAATGCTGTTTTAAGGTTTTTGT
ACCCCAATGAGAGATTTTTAAGGGTTAAGAAAAGGGACTTTTATTGCTCA
CATCCGACACCCATCTTACCTAAATACCCCCTCCGGTGGATTCATATTTT
GTTTC
Run BLAST on NCBI

protein sequence of TCONS_00062179-protein

>TCONS_00062179-protein ID=TCONS_00062179-protein|Name=TCONS_00062179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MIIEDINLARQRIAQDIVTSFKKFLLYGLILTIIVVSGAIVFFYTEQCWS
NVPQEYSQESSTQKLCNDILKINETHSDDQNVIAAISNITVSCLKHKNYK
QRQKLSDLGTRKTCTLDSIGFAYWMGYVFTIVFTIGYGRVVTNTTAGRAL
TMVYATISIPIASLTTIYCAKTVDNCVKYMVLMFEQRALKRQKVVWFTRK
CACIEMVYLVFMIMFYAWRQHDTILRNYTFFDAVYHVFITVTTIGFGDLD
PDQSGRTSQTGVQMVAILMVEIIVFFITFSLMGAFISGIVSTEEGKNNKE
EQRKLKSSSNDVIEKYTAVAL
Run BLAST on NCBI

transcript from alignment at scaffold_362:344844..347273+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062179 ID=TCONS_00062179|Name=TCONS_00062179|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at scaffold_362:344844..347273+ (Clytia hemisphaerica)
AACTATTTTTATGAGTATTGagcttttgtgattttttgaaagtgtaGTAG TGAAATTTTGTGTGTTTTTGGGCTTAAAAATGATCATTGAAGACATTAAT CTTGCTAGACAGCGTATCGCACAAGACATTGTTAcaagtttcaaaaagtt tttactATATGGTCTCATTCTAACCATTATTGTTGTTTCTGGTGCGATAG TTTTCTTTTATACCGAACAATGTTGGTCTAACGTACCACAAGAATATAGC CAAGAATCTTCAACTCAAAAACTCTGTAATGATATTCTCAAAATCAACGA AACACACTCAGATGATCAAAATGTCATTGCAGCCATATCGAATATTACTG TATCTTGTTTGAAGCATAAAAACTACAAGCAACGACAAAAGTTATCTGAT TTAGGTACAAGAAAGACTTGCACATTAGATAGTATTGGTTTTGCATACTG GATGGGTTATGTCTTCACCATTGTTTTCACAATCGGTAAGTTTGGTAGAC TCCTGGGAGGGCACGCAACGTCTTAGCAACGTTCATTCaagtacaccttt tcgaccgtagctgtcaattgccgcacgggcatttttttgtccgctttatc ccactaaaaccgtcccagtccttttttcgcacctatagacaatagaaaaa tgtgtcgaaaaaggattggatcgattttagtgggataaaagtGGCACACG CCTGactgcgcgactacggtcgaaaaggtgtatttcggAGTAAGGTCTTA CAGATCTTCAGATCTTCGTAAGAGATGAAGCATAAGATCTTGTAaaaacc cctgtgtcacagacccgctgggacccccgtcccactggaaaattttgccT AAATTTTATTCCCAGTGAACAAAATGCCCTACAATTTTCGGTCACACTGG GGAATTGACTTTGTActtatccccattgaaattcaatacaaaaactaaaa aattacactccaaaaccatccccactggatattTTAAGCTTGGAAACact agaatttttatccccatttggatttcaatcgaaatttttaccccctttct tggaaaaagtccgaccggggctgtgagacagggtgttTGCAAAAACTTAA CTTCCTTCAAAAGATCTTGCGCATTTCATCTTGCTTGTTCACCTTGTAAG ATAACTTTTATGACGGTGTCTTATAAGATCTTAATAATATTTTAGAGCAA GTGTCTTGTACTTTTACCTCGCGAAGATTATCATATTATGTGTGAAAAGG GTTAACTTAGTATAATACATAATCTCCAATTAGCTggatcttttattttt ttttcaccagGTTATGGTCGTGTTGTTACAAACACAACTGCTGGTCGAGC ACTGACCATGGTTTATGCTACCATCTCTATCCCTATCGCATCCTTAACAA CCATTTACTGTGCCAAGACTGTTGACAACTGTGTTAAATACATGGTCCTC ATGTTTGAGCAACGTGCTTTAAAACGTCAAAAGGTTGTTTGGTTCACCAG AAAATGTGCTTGCATTGAAATGGTTTATTTAGTGTTTATGATTATGTTTT ACGCTTGGCGCCAACATGATACCATATTACGTAATTATACTTTCTTTGAT GCTGTTTATCACGTGTTTATTACAGTGACCACTATCGGGTTTGGTGACCT TGATCCAGACCAGAGTGGAAGGACATCACAGACAGGTGTTCAAATGGTGG CCATCTTGATGGTAGAAATTATAGTATTTTTCATCACTTTCTCATTGATG GGAGCTTTCATAAGTGGTATAGTTTCAACTGAGGAgggaaaaaataacaa agaagaacaaaggaaattgaaaAGTTCATCAAATGATGTTATAGAGAAAT ATACTGCTGTTGCCTTGTGAATGGCCAATGTTATCACCTAAACCGAAGTA TCTAAAAAGGGTGACTCCTTTATAACATAGAGTAACGAGGGGGTTACAGG GAAGGGAATCTCGAAAACATTCCGAGTACCCCTGGTTTTTGAAATGCAAT TTCGTTGAAAAGAACAATGTTTACCCCTTGTAAGATGCTGGTGGAAGATG GTATTACTGTAGTGTATTTAGGAACTACGTTTGAACTTCCATGAACTCAA ACACTCTAACCGAACCGAGTTTGTTCAAGTTATGGATATATCGTCAAGTA ACGCTGACTGGCTTTTTTAGGGTCAGAGATGGAGCATTAAATGTGAATGT GATCCCATGTTGATTTGTTATATACTTTCAAACTACGAGACTTTATGACC GTGAGGgagtcgattttttatttttcgtaattttggaccCTTTCATAGAC TCTAATGCTGTTTTAAGGTTTTTGTACCCCAATGAGAGATTTTTAAGGGT TAAGAAAAGGGACTTTTATTGCTCACATCCGACACCCATCTTACCTAAAT ACCCCCTCCGGTGGATTCATATTTTGTTTC

Coding sequence (CDS) from alignment at scaffold_362:344844..347273+

>TCONS_00062179 ID=TCONS_00062179|Name=TCONS_00062179|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_362:344844..347273+ (Clytia hemisphaerica)
ATGATCATTGAAGACATTAATCTTGCTAGACAGCGTATCGCACAAGACAT
TGTTAcaagtttcaaaaagtttttactATATGGTCTCATTCTAACCATTA
TTGTTGTTTCTGGTGCGATAGTTTTCTTTTATACCGAACAATGTTGGTCT
AACGTACCACAAGAATATAGCCAAGAATCTTCAACTCAAAAACTCTGTAA
TGATATTCTCAAAATCAACGAAACACACTCAGATGATCAAAATGTCATTG
CAGCCATATCGAATATTACTGTATCTTGTTTGAAGCATAAAAACTACAAG
CAACGACAAAAGTTATCTGATTTAGGTACAAGAAAGACTTGCACATTAGA
TAGTATTGGTTTTGCATACTGGATGGGTTATGTCTTCACCATTGTTTTCA
CAATCGGTTATGGTCGTGTTGTTACAAACACAACTGCTGGTCGAGCACTG
ACCATGGTTTATGCTACCATCTCTATCCCTATCGCATCCTTAACAACCAT
TTACTGTGCCAAGACTGTTGACAACTGTGTTAAATACATGGTCCTCATGT
TTGAGCAACGTGCTTTAAAACGTCAAAAGGTTGTTTGGTTCACCAGAAAA
TGTGCTTGCATTGAAATGGTTTATTTAGTGTTTATGATTATGTTTTACGC
TTGGCGCCAACATGATACCATATTACGTAATTATACTTTCTTTGATGCTG
TTTATCACGTGTTTATTACAGTGACCACTATCGGGTTTGGTGACCTTGAT
CCAGACCAGAGTGGAAGGACATCACAGACAGGTGTTCAAATGGTGGCCAT
CTTGATGGTAGAAATTATAGTATTTTTCATCACTTTCTCATTGATGGGAG
CTTTCATAAGTGGTATAGTTTCAACTGAGGAgggaaaaaataacaaagaa
gaacaaaggaaattgaaaAGTTCATCAAATGATGTTATAGAGAAATATAC
TGCTGTTGCCTTGTGAATGATCATTGAAGACATTAATCTTGCTAGACAGC
GTATCGCACAAGACATTGTTAcaagtttcaaaaagtttttactATATGGT
CTCATTCTAACCATTATTGTTGTTTCTGGTGCGATAGTTTTCTTTTATAC
CGAACAATGTTGGTCTAACGTACCACAAGAATATAGCCAAGAATCTTCAA
CTCAAAAACTCTGTAATGATATTCTCAAAATCAACGAAACACACTCAGAT
GATCAAAATGTCATTGCAGCCATATCGAATATTACTGTATCTTGTTTGAA
GCATAAAAACTACAAGCAACGACAAAAGTTATCTGATTTAGGTACAAGAA
AGACTTGCACATTAGATAGTATTGGTTTTGCATACTGGATGGGTTATGTC
TTCACCATTGTTTTCACAATCGGTTATGGTCGTGTTGTTACAAACACAAC
TGCTGGTCGAGCACTGACCATGGTTTATGCTACCATCTCTATCCCTATCG
CATCCTTAACAACCATTTACTGTGCCAAGACTGTTGACAACTGTGTTAAA
TACATGGTCCTCATGTTTGAGCAACGTGCTTTAAAACGTCAAAAGGTTGT
TTGGTTCACCAGAAAATGTGCTTGCATTGAAATGGTTTATTTAGTGTTTA
TGATTATGTTTTACGCTTGGCGCCAACATGATACCATATTACGTAATTAT
ACTTTCTTTGATGCTGTTTATCACGTGTTTATTACAGTGACCACTATCGG
GTTTGGTGACCTTGATCCAGACCAGAGTGGAAGGACATCACAGACAGGTG
TTCAAATGGTGGCCATCTTGATGGTAGAAATTATAGTATTTTTCATCACT
TTCTCATTGATGGGAGCTTTCATAAGTGGTATAGTTTCAACTGAGGAggg
aaaaaataacaaagaagaacaaaggaaattgaaaAGTTCATCAAATGATG
TTATAGAGAAATATACTGCTGTTGCCTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038985XLOC_038985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062179-proteinTCONS_00062179-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062179-exon-scaffold_362-1491911889:344844..345328TCONS_00062179-exon-scaffold_362-1491911889:344844..345328Clytia hemisphaericaexon
TCONS_00062179-exon-scaffold_362-1510915933:344844..345328TCONS_00062179-exon-scaffold_362-1510915933:344844..345328Clytia hemisphaericaexon
TCONS_00062179-exon-scaffold_362-1575043694:344844..345328TCONS_00062179-exon-scaffold_362-1575043694:344844..345328Clytia hemisphaericaexon
TCONS_00062179-exon-scaffold_362-1491911889:346154..347273TCONS_00062179-exon-scaffold_362-1491911889:346154..347273Clytia hemisphaericaexon
TCONS_00062179-exon-scaffold_362-1510915933:346154..347273TCONS_00062179-exon-scaffold_362-1510915933:346154..347273Clytia hemisphaericaexon
TCONS_00062179-exon-scaffold_362-1575043694:346154..347273TCONS_00062179-exon-scaffold_362-1575043694:346154..347273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:344844..347273 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0508277 0.0247825 0 0 0.51408 0.324986 0.228715 0.244708 0.192742 0.0530538 0.231729 0.592392 0.152118 0.140423 0 0.0154865 1.35454 1.09505 1.43182 1.10252 2.94859 2.9843 2.3894 2.62267 1.58257 2.94658 3.79837 2.41736 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0032802pore_dom_K_chnl
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071805 potassium ion transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005267 potassium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top