|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062267 ID=TCONS_00062267|Name=TCONS_00062267|organism=Clytia hemisphaerica|type=transcript|length=1172bp
ATGACATTATTTGGCAACATAGCAATTAttaaaattcacttcaaaatgAT
TTGGACAAGTCATTAATCAAATCACTCATGTTGCATGATTCTTTGAATAA
CTAGTACTGCTAGAAAAGCATTCAATAAAAATTACAACTTCTGACAGAAG
ATgctgaaaaataatttaataacaAGCGAACCTATCATTTTTTTGTATTC
AATCATTTATTTCATCAATCTGTCTATCCTGCCACAACTCGTGTTGCAAA
AAGTCTGTTTGGAGAAATATGATGATGGACTTCATGGAAATGGTACGACA
TCATCGTCATTGTGTGAAGAAAAGTCATCAACAGTTATTACAGCTGATAT
GCAAAAGGAATCGTCACATTGGTGTTTCGCTATTCTTGCTTCGTCTCAAA
TACCATCCATTCTCACTGTCCTTATTTGGGGACCCATAAGCGACGTCATC
GGCCGCAAGAAGGCCATCCTCTTGGTCCCCATCATGAGTATCTTACAAAA
CATTATTTTCCTCCTATGTTCATACTACATGAATTCATCCATCATTTACC
TTTGTGTTGGAATGTTCCTGGCCTGTATTTTCGGCGAATTTCCTGGGGTA
CTGGCACTTTCGTACGGCTTCATTGCAGATGTGACAACTGGGCGAAAGGA
AAAATCACGAACTTCGAGGATGGCTTTGGTAGATTTTGCTGGAAATCTTG
CTGGATTACCAGCAGGACTCTTTGCAGGACAATTACTGAAGCATTTAGGA
TTCACAGCAGTATTTGGACTTTCAATTGGAATCAATTTGATTATCCTCTT
ATACATCATTTTTCTTCTCCCAGAAGAGCTATACAACAGTTGAGAATGAA
GCGATCACATTTCAACCACAGAAAACATTTGATATCAATGATAACAACAT
CACATTATCAAAGAGCAACAAGGAAAAGGAGGAAGATGAAAGCACAAATA
AAATCCCAaaattatttctaaaatttcccaCTTGTTATAAAAgtaataat
gaaaaaaatattttatacaaTTTAGATGGGCCATTCGAGGTAAGATTATC
AACAGTCACATTACCGTCAACAAATCAATCACAATCAATAACATCGAGCC
GTCAATTCTCTTATAATGCTCAGAAAGGGCCTGATCTtactaaaggcttg
gggacacgagaagtttttattc Run BLAST on NCBI protein sequence of TCONS_00062267-protein >TCONS_00062267-protein ID=TCONS_00062267-protein|Name=TCONS_00062267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MLKNNLITSEPIIFLYSIIYFINLSILPQLVLQKVCLEKYDDGLHGNGTT
SSSLCEEKSSTVITADMQKESSHWCFAILASSQIPSILTVLIWGPISDVI
GRKKAILLVPIMSILQNIIFLLCSYYMNSSIIYLCVGMFLACIFGEFPGV
LALSYGFIADVTTGRKEKSRTSRMALVDFAGNLAGLPAGLFAGQLLKHLG
FTAVFGLSIGINLIILLYIIFLLPEELYNS Run BLAST on NCBI transcript from alignment at scaffold_362:627051..628525- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062267 ID=TCONS_00062267|Name=TCONS_00062267|organism=Clytia hemisphaerica|type=transcript|length=1475bp|location=Sequence derived from alignment at scaffold_362:627051..628525- (Clytia hemisphaerica)
ATGACATTATTTGGCAACATAGCAATTATTAAAATTCACTTCAAAATGAT
TTGGACAAGTCATTAATCAAATCACTCATGTTGCATGATTCTTTGAATAA
CTAGTACTGCTAGAAAAGCATTCAATAAAAATTACAACTTCTGACAGAAG
ATGCTGAAAAATAATTTAATAACAAGCGAACCTATCATTTTTTTGTATTC
AATCATTTATTTCATCAATCTGTCTATCCTGCCACAACTCGTGTTGCAAA
AAGTCTGTTTGGAGAAATATGATGATGGACTTCATGGAAATGGTACGACA
TCATCGTCATTGTGTGAAGAAAAGTCATCAACAGTTATTACAGCTGATAT
GCAAAAGGTAAACATTTTTCTGTATGATCAATCAAATTATTAAATCTATT
GACTGACATCAGATCTTAAACCCTTACATCTTGACCATATACGCTAAAAA
ATTTGATTTCATTATAGCTCTTTTTATCCAAAACTACAAAGATCTTAGTT
TTTTTATTTATGATGTCAAAAATTGAACTATAACAAACTAGAACACTGCT
GGGTTAATCTGGCAATTGTCTTGCAACTCTTTGGATAAAATTAGAACCTA
TTGTTTTTGAATGGGAAGAAGCATTTTATATAAGAAGTCTTGTTACATTT
TCTTTATTAGGAATCGTCACATTGGTGTTTCGCTATTCTTGCTTCGTCTC
AAATACCATCCATTCTCACTGTCCTTATTTGGGGACCCATAAGCGACGTC
ATCGGCCGCAAGAAGGCCATCCTCTTGGTCCCCATCATGAGTATCTTACA
AAACATTATTTTCCTCCTATGTTCATACTACATGAATTCATCCATCATTT
ACCTTTGTGTTGGAATGTTCCTGGCCTGTATTTTCGGCGAATTTCCTGGG
GTACTGGCACTTTCGTACGGCTTCATTGCAGATGTGACAACTGGGCGAAA
GGAAAAATCACGAACTTCGAGGATGGCTTTGGTAGATTTTGCTGGAAATC
TTGCTGGATTACCAGCAGGACTCTTTGCAGGACAATTACTGAAGCATTTA
GGATTCACAGCAGTATTTGGACTTTCAATTGGAATCAATTTGATTATCCT
CTTATACATCATTTTTCTTCTCCCAGAAGAGCTATACAACAGTTGAGAAT
GAAGCGATCACATTTCAACCACAGAAAACATTTGATATCAATGATAACAA
CATCACATTATCAAAGAGCAACAAGGAAAAGGAGGAAGATGAAAGCACAA
ATAAAATCCCAAAATTATTTCTAAAATTTCCCACTTGTTATAAAAGTAAT
AATGAAAAAAATATTTTATACAATTTAGATGGGCCATTCGAGGTAAGATT
ATCAACAGTCACATTACCGTCAACAAATCAATCACAATCAATAACATCGA
GCCGTCAATTCTCTTATAATGCTCAGAAAGGGCCTGATCTTACTAAAGGC
TTGGGGACACGAGAAGTTTTTATTC Coding sequence (CDS) from alignment at scaffold_362:627051..628525- >TCONS_00062267 ID=TCONS_00062267|Name=TCONS_00062267|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_362:627051..628525- (Clytia hemisphaerica)
GAATCGTCACATTGGTGTTTCGCTATTCTTGCTTCGTCTCAAATACCATC
CATTCTCACTGTCCTTATTTGGGGACCCATAAGCGACGTCATCGGCCGCA
AGAAGGCCATCCTCTTGGTCCCCATCATGAGTATCTTACAAAACATTATT
TTCCTCCTATGTTCATACTACATGAATTCATCCATCATTTACCTTTGTGT
TGGAATGTTCCTGGCCTGTATTTTCGGCGAATTTCCTGGGGTACTGGCAC
TTTCGTACGGCTTCATTGCAGATGTGACAACTGGGCGAAAGGAAAAATCA
CGAACTTCGAGGATGGCTTTGGTAGATTTTGCTGGAAATCTTGCTGGATT
ACCAGCAGGACTCTTTGCAGGACAATTACTGAAGCATTTAGGATTCACAG
CAGTATTTGGACTTTCAATTGGAATCAATTTGATTATCCTCTTATACATC
ATTTTTCTTCTCCCAGAAGAGCTATACAACAGTTGAATGCTGAAAAATAA
TTTAATAACAAGCGAACCTATCATTTTTTTGTATTCAATCATTTATTTCA
TCAATCTGTCTATCCTGCCACAACTCGTGTTGCAAAAAGTCTGTTTGGAG
AAATATGATGATGGACTTCATGGAAATGGTACGACATCATCGTCATTGTG
TGAAGAAAAGTCATCAACAGTTATTACAGCTGATATGCAAAAGGAATCGT
CACATTGGTGTTTCGCTATTCTTGCTTCGTCTCAAATACCATCCATTCTC
ACTGTCCTTATTTGGGGACCCATAAGCGACGTCATCGGCCGCAAGAAGGC
CATCCTCTTGGTCCCCATCATGAGTATCTTACAAAACATTATTTTCCTCC
TATGTTCATACTACATGAATTCATCCATCATTTACCTTTGTGTTGGAATG
TTCCTGGCCTGTATTTTCGGCGAATTTCCTGGGGTACTGGCACTTTCGTA
CGGCTTCATTGCAGATGTGACAACTGGGCGAAAGGAAAAATCACGAACTT
CGAGGATGGCTTTGGTAGATTTTGCTGGAAATCTTGCTGGATTACCAGCA
GGACTCTTTGCAGGACAATTACTGAAGCATTTAGGATTCACAGCAGTATT
TGGACTTTCAATTGGAATCAATTTGATTATCCTCTTATACATCATTTTTC
TTCTCCCAGAAGAGCTATACAACAGTTGAATGCTGAAAAATAATTTAATA
ACAAGCGAACCTATCATTTTTTTGTATTCAATCATTTATTTCATCAATCT
GTCTATCCTGCCACAACTCGTGTTGCAAAAAGTCTGTTTGGAGAAATATG
ATGATGGACTTCATGGAAATGGTACGACATCATCGTCATTGTGTGAAGAA
AAGTCATCAACAGTTATTACAGCTGATATGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062267-exon-scaffold_362-1575043694:628169..628525 | TCONS_00062267-exon-scaffold_362-1575043694:628169..628525 | Clytia hemisphaerica | exon |
| TCONS_00062267-exon-scaffold_362-1575043694:627051..627865 | TCONS_00062267-exon-scaffold_362-1575043694:627051..627865 | Clytia hemisphaerica | exon |
| TCONS_00062267-exon-scaffold_362-1510915933:628169..628525 | TCONS_00062267-exon-scaffold_362-1510915933:628169..628525 | Clytia hemisphaerica | exon |
| TCONS_00062267-exon-scaffold_362-1510915933:627051..627865 | TCONS_00062267-exon-scaffold_362-1510915933:627051..627865 | Clytia hemisphaerica | exon |
| TCONS_00062267-exon-scaffold_362-1491911889:628169..628525 | TCONS_00062267-exon-scaffold_362-1491911889:628169..628525 | Clytia hemisphaerica | exon |
| TCONS_00062267-exon-scaffold_362-1491911889:627051..627865 | TCONS_00062267-exon-scaffold_362-1491911889:627051..627865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:627051..628525 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
