TCONS_00062302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062302
Unique NameTCONS_00062302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062302 ID=TCONS_00062302|Name=TCONS_00062302|organism=Clytia hemisphaerica|type=transcript|length=2040bp
cagttgatgaaaaattaaattgaaagcAAAAGAAATAGTTTTGCAACACA
CCAAAGTAACCAAACAGCAGAAATAGTTGGTTTATTTCAACGTAGTGATC
ATTTGACTCATGAATTTGGTTAACGAAATAACACACGGTGGAATTCACAT
AAACAGAAAAATGTCAAACTGGACAGGCATTCTACCATCATTAATAAACG
GGTCAACAACTACGGCACCGACAGTAAACGGCTCACAAATGAACATCACA
TTCGGTCCATACTGCCAATCTTATGATAACACTGCTTTGAATCGTGTGAT
TTTCGGTGTCCTAATTGTCGTTTTTATCGTTGGTTTTCTTGTCAATACAT
TAGCGGTGACTGTGATTCTAGCCTCTAGATCATTACGGCGACAGTGGACC
AACTTATTTGTGGCATCATTGAATATATGCGATATCGGAGTTATTTTATT
TGTGGTTTCGTTACGAATCGATGATTATCTTTACGACGGTTTTTGTTTCG
ATATTCATGTTTGTCGTTTATTCAATATCGCCGATTCGATATTTCATTCG
TGTTCTATATCACATCTTTTCGTAATGGCTATCGAACGATTTATTGCCGT
CCGTATGCCATTTGTATACCAGCGATATTTTAATCATCGCACGACCATTC
AAATCATATGCGCAACTTGGTTATACTCTATCGGATGGGGCGTGGCAGGT
AGTTTTAAATGGGACGCACAGGATGGAATTATCCAATCAAGTTCATTCAT
AAACGAGGGTGTGAAACGCAAATGTTTGGTTGATAACACTTATGGTATGT
TGGCTATCGTGTTTGTTATTTATCTTGTCCCGTTGATCATCATGGCTGTT
CTGTACGCCCTCATCTTGAAGACAGCTCTGGAACAACAGAGGATGATCTC
CTCTTTAGCTCCATCATATTTACGACAAGATGACCACGCAACTCAGAAAC
GAAAACAAGAAGTTAGCGCGTCTAAAACCGTAGCTGTCATCTATGGTGCA
TTCGCACTATGCTGGTTACCCAATTTTATTATCATCATCATTTTACAACA
ATGCCCGGAATGCATAGTACCATTCCAAATAGAACACCCTGAACTATCCA
AAGCAATATTTACAATCTTCATTGTCCTTTTACCAGCTATCCATAGTTGT
TTAAACCCTTTTATTTATATCATATTTCATCGGAGGTTTCGAAAAGCATT
TAAGATTTTACTACAAGGTAAATTCAAAACATTGACTGAGCACTCTTTGA
GACGAAACAGCGCGAAATCAACAGGATCAAGTCCGAAAACCATTGAAATG
ACCATCAAAGGGAGCTGAGTTGAACACTTCGACGTACTAAGCCAACCTTG
GTAGAAACATGGCAGAAAAGGATTGTGGGCTGATTAAACATTCGTTGTAA
TTAGACCGTTAACATACCTGAGTAAGGTATGTTACCCTGCAGAGCAGGAC
CGAGGACCGAAAAAATTTTCGTTATCACCACATCATAGACAGTAGAACAC
TTTAAAACGTGCAGACCCAATATGTTATGACCACGGTAGGACAGGTCAAT
ATACCGGTCAAACATTGTAGTTATAACAGTAGAATATGATTTTCTGCTAA
TCCATATTTTGTCATTTCGACGGTAGAACGTATCAAAGGAATTTAGGTAA
TTAGGCGTCAACGGGCCGTTTTTCAAACGCTTTAGTATTTTTTCATGGAG
CAGAGTTAAGTGTGATCTGAATTATTCCAGTCAAAGAAATCATCATTTAC
CAAGGCGCATTGCCTAACATTGCATTGCACAACTATACGAGTATCAAGCA
GCTGCTGAAGGTCATCCCAAACATTAGCATTAATATACTAGGCTCTTTAC
AACAGTGCGAACAAAACCAAAGGAACTTAATTAAAGCAGATAGCTTATTC
GACTGGAAGTATTTTTAGTTCATGGTGAACTATATGGCAATTATTTTTTA
TATGTTAGTACATAATTTATTAAGTATATGATCGTTACGTGTCAATGTCA
AATCCAAAATgtatattttaaaagattttttacttcggat
Run BLAST on NCBI

protein sequence of TCONS_00062302-protein

>TCONS_00062302-protein ID=TCONS_00062302-protein|Name=TCONS_00062302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MNLVNEITHGGIHINRKMSNWTGILPSLINGSTTTAPTVNGSQMNITFGP
YCQSYDNTALNRVIFGVLIVVFIVGFLVNTLAVTVILASRSLRRQWTNLF
VASLNICDIGVILFVVSLRIDDYLYDGFCFDIHVCRLFNIADSIFHSCSI
SHLFVMAIERFIAVRMPFVYQRYFNHRTTIQIICATWLYSIGWGVAGSFK
WDAQDGIIQSSSFINEGVKRKCLVDNTYGMLAIVFVIYLVPLIIMAVLYA
LILKTALEQQRMISSLAPSYLRQDDHATQKRKQEVSASKTVAVIYGAFAL
CWLPNFIIIIILQQCPECIVPFQIEHPELSKAIFTIFIVLLPAIHSCLNP
FIYIIFHRRFRKAFKILLQGKFKTLTEHSLRRNSAKSTGSSPKTIEMTIK
GS
Run BLAST on NCBI

transcript from alignment at scaffold_362:162083..164122

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062302 ID=TCONS_00062302|Name=TCONS_00062302|organism=Clytia hemisphaerica|type=transcript|length=2040bp|location=Sequence derived from alignment at scaffold_362:162083..164122 (Clytia hemisphaerica)
atccgaagtaaaaaatcttttaaaatatacATTTTGGATTTGACATTGAC
ACGTAACGATCATATACTTAATAAATTATGTACTAACATATAAAAAATAA
TTGCCATATAGTTCACCATGAACTAAAAATACTTCCAGTCGAATAAGCTA
TCTGCTTTAATTAAGTTCCTTTGGTTTTGTTCGCACTGTTGTAAAGAGCC
TAGTATATTAATGCTAATGTTTGGGATGACCTTCAGCAGCTGCTTGATAC
TCGTATAGTTGTGCAATGCAATGTTAGGCAATGCGCCTTGGTAAATGATG
ATTTCTTTGACTGGAATAATTCAGATCACACTTAACTCTGCTCCATGAAA
AAATACTAAAGCGTTTGAAAAACGGCCCGTTGACGCCTAATTACCTAAAT
TCCTTTGATACGTTCTACCGTCGAAATGACAAAATATGGATTAGCAGAAA
ATCATATTCTACTGTTATAACTACAATGTTTGACCGGTATATTGACCTGT
CCTACCGTGGTCATAACATATTGGGTCTGCACGTTTTAAAGTGTTCTACT
GTCTATGATGTGGTGATAACGAAAATTTTTTCGGTCCTCGGTCCTGCTCT
GCAGGGTAACATACCTTACTCAGGTATGTTAACGGTCTAATTACAACGAA
TGTTTAATCAGCCCACAATCCTTTTCTGCCATGTTTCTACCAAGGTTGGC
TTAGTACGTCGAAGTGTTCAACTCAGCTCCCTTTGATGGTCATTTCAATG
GTTTTCGGACTTGATCCTGTTGATTTCGCGCTGTTTCGTCTCAAAGAGTG
CTCAGTCAATGTTTTGAATTTACCTTGTAGTAAAATCTTAAATGCTTTTC
GAAACCTCCGATGAAATATGATATAAATAAAAGGGTTTAAACAACTATGG
ATAGCTGGTAAAAGGACAATGAAGATTGTAAATATTGCTTTGGATAGTTC
AGGGTGTTCTATTTGGAATGGTACTATGCATTCCGGGCATTGTTGTAAAA
TGATGATGATAATAAAATTGGGTAACCAGCATAGTGCGAATGCACCATAG
ATGACAGCTACGGTTTTAGACGCGCTAACTTCTTGTTTTCGTTTCTGAGT
TGCGTGGTCATCTTGTCGTAAATATGATGGAGCTAAAGAGGAGATCATCC
TCTGTTGTTCCAGAGCTGTCTTCAAGATGAGGGCGTACAGAACAGCCATG
ATGATCAACGGGACAAGATAAATAACAAACACGATAGCCAACATACCATA
AGTGTTATCAACCAAACATTTGCGTTTCACACCCTCGTTTATGAATGAAC
TTGATTGGATAATTCCATCCTGTGCGTCCCATTTAAAACTACCTGCCACG
CCCCATCCGATAGAGTATAACCAAGTTGCGCATATGATTTGAATGGTCGT
GCGATGATTAAAATATCGCTGGTATACAAATGGCATACGGACGGCAATAA
ATCGTTCGATAGCCATTACGAAAAGATGTGATATAGAACACGAATGAAAT
ATCGAATCGGCGATATTGAATAAACGACAAACATGAATATCGAAACAAAA
ACCGTCGTAAAGATAATCATCGATTCGTAACGAAACCACAAATAAAATAA
CTCCGATATCGCATATATTCAATGATGCCACAAATAAGTTGGTCCACTGT
CGCCGTAATGATCTAGAGGCTAGAATCACAGTCACCGCTAATGTATTGAC
AAGAAAACCAACGATAAAAACGACAATTAGGACACCGAAAATCACACGAT
TCAAAGCAGTGTTATCATAAGATTGGCAGTATGGACCGAATGTGATGTTC
ATTTGTGAGCCGTTTACTGTCGGTGCCGTAGTTGTTGACCCGTTTATTAA
TGATGGTAGAATGCCTGTCCAGTTTGACATTTTTCTGTTTATGTGAATTC
CACCGTGTGTTATTTCGTTAACCAAATTCATGAGTCAAATGATCACTACG
TTGAAATAAACCAACTATTTCTGCTGTTTGGTTACTTTGGTGTGTTGCAA
AACTATTTCTTTTgctttcaatttaatttttcatcaactg

Coding sequence (CDS) from alignment at scaffold_362:162083..164122

>TCONS_00062302 ID=TCONS_00062302|Name=TCONS_00062302|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_362:162083..164122 (Clytia hemisphaerica)
TCAGCTCCCTTTGATGGTCATTTCAATGGTTTTCGGACTTGATCCTGTTG
ATTTCGCGCTGTTTCGTCTCAAAGAGTGCTCAGTCAATGTTTTGAATTTA
CCTTGTAGTAAAATCTTAAATGCTTTTCGAAACCTCCGATGAAATATGAT
ATAAATAAAAGGGTTTAAACAACTATGGATAGCTGGTAAAAGGACAATGA
AGATTGTAAATATTGCTTTGGATAGTTCAGGGTGTTCTATTTGGAATGGT
ACTATGCATTCCGGGCATTGTTGTAAAATGATGATGATAATAAAATTGGG
TAACCAGCATAGTGCGAATGCACCATAGATGACAGCTACGGTTTTAGACG
CGCTAACTTCTTGTTTTCGTTTCTGAGTTGCGTGGTCATCTTGTCGTAAA
TATGATGGAGCTAAAGAGGAGATCATCCTCTGTTGTTCCAGAGCTGTCTT
CAAGATGAGGGCGTACAGAACAGCCATGATGATCAACGGGACAAGATAAA
TAACAAACACGATAGCCAACATACCATAAGTGTTATCAACCAAACATTTG
CGTTTCACACCCTCGTTTATGAATGAACTTGATTGGATAATTCCATCCTG
TGCGTCCCATTTAAAACTACCTGCCACGCCCCATCCGATAGAGTATAACC
AAGTTGCGCATATGATTTGAATGGTCGTGCGATGATTAAAATATCGCTGG
TATACAAATGGCATACGGACGGCAATAAATCGTTCGATAGCCATTACGAA
AAGATGTGATATAGAACACGAATGAAATATCGAATCGGCGATATTGAATA
AACGACAAACATGAATATCGAAACAAAAACCGTCGTAAAGATAATCATCG
ATTCGTAACGAAACCACAAATAAAATAACTCCGATATCGCATATATTCAA
TGATGCCACAAATAAGTTGGTCCACTGTCGCCGTAATGATCTAGAGGCTA
GAATCACAGTCACCGCTAATGTATTGACAAGAAAACCAACGATAAAAACG
ACAATTAGGACACCGAAAATCACACGATTCAAAGCAGTGTTATCATAAGA
TTGGCAGTATGGACCGAATGTGATGTTCATTTGTGAGCCGTTTACTGTCG
GTGCCGTAGTTGTTGACCCGTTTATTAATGATGGTAGAATGCCTGTCCAG
TTTGACATTTTTCTGTTTATGTGAATTCCACCGTGTGTTATTTCGTTAAC
CAAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039041XLOC_039041Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062302-proteinTCONS_00062302-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062302-exon-scaffold_362-1491911889:162083..164122TCONS_00062302-exon-scaffold_362-1491911889:162083..164122Clytia hemisphaericaexon
TCONS_00062302-exon-scaffold_362-1510915933:162083..164122TCONS_00062302-exon-scaffold_362-1510915933:162083..164122Clytia hemisphaericaexon
TCONS_00062302-exon-scaffold_362-1575043694:162083..164122TCONS_00062302-exon-scaffold_362-1575043694:162083..164122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:162083..164122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0193762	0	0	0.0429271	1.28036	1.1563	0.473311	0.886216	0.0979675	0.38427	0.137415	0.11614	5.78603	5.94193	0.176039	0.673015	1.74547	1.28215	26.5911	26.166	2.62276	3.83786	1.55514	2.16117	3.49496	2.19084	2.68342	4.36662	5.80663	4.11931
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00062302 vs. Swiss-Prot (Human)
Match: AA2AR (Adenosine receptor A2a OS=Homo sapiens GN=ADORA2A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.312e-24
Identity = 93/309 (30.10%), Postives = 136/309 (44.01%), Query Frame = 2 
Query:  398 TNLFVASLNICDIGVILFVVSLRIDDYLYDGFCFDIHVCRLFNIADSIFHSCSISHLFVMAIERFIAVRMPFVYQRYFNHRTTIQIICATWLYSIGWGVAGSFKWD----AQDGIIQSSSFINEGVKRKCLVDNTYGMLAIV----FVIYLVPLIIMAVLYALILKTALEQ-QRMISSLAPSYLRQDDHATQKRKQEVSASKTVAVIYGAFALCWLPNFIIIIILQQCPECIVPFQIEHPELSKAIFTIFIVLLPAIHSCLNPFIYIIFHRRFRKAFKILLQGKFKTLTEHSLRRNSA-KSTGSSPKTI 1294
            TN FV SL   DI V +  +   I   +  GFC   H C        +    SI  L  +AI+R+IA+R+P  Y           II   W+ S   G+     W+     ++G   S     EG +  CL ++   M  +V    F   LVPL++M  +Y  I   A  Q ++M S   P      + A    ++EV A+K++A+I G FALCWLP  II      CP+C       H  L         ++L   +S +NPFIY    R FR+ F+       K +  H LR+    K+ G+S + +
Sbjct:   41 TNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQG-CGEG-QVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPG-----ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC------SHAPL---WLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFR-------KIIRSHVLRQQEPFKAAGTSARVL 324
The following BLAST results are available for this feature:
BLAST of TCONS_00062302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AA2AR1.312e-2430.10Adenosine receptor A2a OS=Homo sapiens GN=ADORA2A ... [more]
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