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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062377 ID=TCONS_00062377|Name=TCONS_00062377|organism=Clytia hemisphaerica|type=transcript|length=1657bp
TGAATAGGCTTTTAGATATGAGTTCATTTACTCTAAAATCAGTTGTCACT
GGTCGAAGAAAAATAATCATTACAGTTTTTTCTGTCTGTCATATGGTAGA
GTGGAGTTGGTTGTGAAAAGACAATCTTTTCTCGTCAAACGatttccaaG
TTTTCGCTACAAAATGGCGTCTGAATCCGTTGATGTGCCTGAAGTTCAGG
AGTTGCAGAATGAAATACGAATAATGAAACATGATTTCGAAGACCAGATA
AAAGAGAtaaaagaaaaccttttgaaaGTTGTGCAAGGAAAAGTTGACGG
CCATGAGAAATGGATTCGTCGAATTGAGTCTGATGCTGATACTAAGGAAT
CAAAGTTCCACGAGGAAATGAAACTAAAGGAAAAGCAGCTCCAGGAACTG
AAAGCGGAACTAGCCGAAACTAAAGAGGAAACGAAGAAACATCTGATGGA
GACGGAGAAAATGCAAACGGAACTCGcggaaatcaaaaaagaaatgaaaa
aacaggAAACGGAAAAAGAGAAACAGATTAAAGAATTAAGAACGAATTTG
ACGGAGtgtgaagaaaaaatgaaggaaatgcGAACGGAACATGAGGAAAA
ACACAAAAGTTTGTTGGAAGAACTTCAAGTGAAAGATACgcgaattttca
ttttggaaGAGAAAATAAATGAGGTCGAGGAACACGGAAAGGGAAACGAA
AAAGAGATCGGAAAACTTGCATCCGAAATGAATATGAAAGCTGAGAAGCT
GATCGAGTTGGAATCAAGAATGAACGaacaaaaagagaaatataTCCAAC
TGTATTATCAAATTGGTGAGAAAGGTGAAAAAATATCACAAGTCGAAGAA
ATGTTATGGAAAAAATCGGGCGAAATTTCGGAAGTGATGCACATTGATCG
GGAAACAAGTGAACGACAATTCGGGGAAATCATGTTCAAGTTGAATGAAG
GTAAAAAGCTGACGCAAAGTGTCCTCACCGAgaaccgttgtccgttcgtt
tGGGAAGTAACCAATTTTAAGAAGGAATTTGCTGAATCGAAAGCAGAAAA
TAAAGCTATCATCACACCTGTGTTTTATTGTTTGAATGGATATAAAGGTC
GCTTACAGATATATTTGAATGGCACTCGAGAATGCAAAGATTCGTTCATT
TCAGTTTTCTTTGATCTGGTCGAGGGGCCTTTTGATGACACGTTAGCCTG
GCCGTTGCCTTATGAGAAATTCATCATCACACTCACCATAAACAATAAAC
AAGTGACGTCAAAAGCCATAGAAAGCACATTTTACGGGGGTATAGCGGGG
GAAGCTTACATTCGACCAACCAAGAAAGTGACCCCTGGTATAGGACCACG
CAACTTTTTATCGCACAAAGACTTGCCAAATAACATCAAGAATGATACAT
TGACatttaaatttgatattcaaTAATTCATTTTACTTTCGTTCTCCTGA
CCTAATCCAAGTTACCTGGTCATTCAATTAAATTGGAACTAACAGCTATT
CAGATTCATGGTATTGTGTTTTCAATATTATGTCATTACCTAGGTCGAGA
GTGTTGTCACTAAAATTCATTCACTAATTTTGTCTTGAGGCGAAAAATTC
TACGGGATACCTTATAGATGCTGTAACTTTCGATGCAAGTATTTTATGAG
AAAAAAC Run BLAST on NCBI protein sequence of TCONS_00062377-protein >TCONS_00062377-protein ID=TCONS_00062377-protein|Name=TCONS_00062377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
MASESVDVPEVQELQNEIRIMKHDFEDQIKEIKENLLKVVQGKVDGHEKW
IRRIESDADTKESKFHEEMKLKEKQLQELKAELAETKEETKKHLMETEKM
QTELAEIKKEMKKQETEKEKQIKELRTNLTECEEKMKEMRTEHEEKHKSL
LEELQVKDTRIFILEEKINEVEEHGKGNEKEIGKLASEMNMKAEKLIELE
SRMNEQKEKYIQLYYQIGEKGEKISQVEEMLWKKSGEISEVMHIDRETSE
RQFGEIMFKLNEGKKLTQSVLTENRCPFVWEVTNFKKEFAESKAENKAII
TPVFYCLNGYKGRLQIYLNGTRECKDSFISVFFDLVEGPFDDTLAWPLPY
EKFIITLTINNKQVTSKAIESTFYGGIAGEAYIRPTKKVTPGIGPRNFLS
HKDLPNNIKNDTLTFKFDIQ Run BLAST on NCBI transcript from alignment at scaffold_364:160245..163451+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062377 ID=TCONS_00062377|Name=TCONS_00062377|organism=Clytia hemisphaerica|type=transcript|length=3207bp|location=Sequence derived from alignment at scaffold_364:160245..163451+ (Clytia hemisphaerica)
TGAATAGGCTTTTAGATATGAGTTCATTTACTCTAAAATCAGTTGTCACT
GGTCGAAGAAAAATAATCATTACAGTTTTTTCTGTCTGTCATATGGTAGA
GTGGAGTTGGTTGTGAAAAGACAATCTTTTCTCGTCAAACGGTATGTTAC
TTTCAGTTCTAATACTTCGGTTTTGTGtccttatgttcttaacttaCTTT
TGCATTTTATAAGTCTGTCTCTCTATTGtacggaagccgagaagggacat
ccaaactttctttttttgtcgactttttttctttttttgccgactttttt
tctttttttgctgactttttttctttttttgtcaactttttttctttttt
tgaaaactttttttcattttttgcggacttttttctttttttgaaaactt
tttttctttttttgcggacttttttctattttttttttaaaaaaggtttt
ttttttaatttaactttacTTTTCGAGACTGCTTTTCGACGagggcaaat
tttttatattatgctGCTAATAAATAAAGTGTAGAGTTAACAAGAAAAAA
TTgtccttcgaatctcctgcagttttcgagtgaatcgatttttagttaat
caatagaacttatcaaaagtcccccccccccttaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAAACATAACAAACCATGCCATTTTTAAAC
CCGggggttttttgaaaaaaagaaaaaaaagtccgcaaaaaaagaaaaaa
agtccgcaaaaaaagaaaaaatgtcggcaaaaaaagaaaaaaagtcttca
aatcaaaaaaagaaaaaaagtccgcaaaaaaagaaaaaaagtcagtaaaa
aaagaaaaaaagtcagcaaaaaaagtaaaaaagtcggcaaaaaaagaaaa
aaagtcagcaaaaaaagaaaaaatgtcggcaaaaaaagaaaaaaagtcga
caaaaaagaaagtttggatgtcccttctcggcttccgtaCTATTGACTAA
TCTTTTACTGTCTTTGCTTGCAATTAAGAGACACCCCCTTCTTTTAGACG
CCCCTCGAAAAAACACCCCTCCTTTAAGGAAAAATCAATAAAGAACGCCC
CTCAACTAAACGCCCCTTCGAATAAACGGCTCCCCTCCAGGAGGGACGCC
TATTTGAAATAAGTAGCTGTAAATACTATGCTGTAAGCCCTAAGACAGTA
TAATATAAAGGAAAACTTAGATATACCATAGATGTATCCTTTTAGTATTC
ATTATGATTTTGACCCTTTTCTACAGCCCTAAATTGATATATTTTTACTC
AAATAATAATGAGAAGACAAAATAAGGTTCCAATTCACAATGGTAAAGTG
GCCTCGGTTATTTGATAAACgccccttcgaataaacgccccttttaaaaa
caaaaaatttattaaacGCNAAAGTGGCCTCggttatttaataaacgccc
cctcgaataaacgccccttttaaaaacaaaaaatttattgaaCAACCGGG
GCGTTTCGGTAAATGTTATTTTCTGATTAttcttttgatagatttccaaG
TTTTCGCTACAAAATGGCGTCTGAATCCGTTGATGTGCCTGAAGTTCAGG
AGTTGCAGAATGAAATACGAATAATGAAACATGATTTCGAAGACCAGATA
AAAGAGAtaaaagaaaaccttttgaaaGTTGTGCAAGGAAAAGTTGACGG
CCATGAGAAATGGATTCGTCGAATTGAGTCTGATGCTGATACTAAGGAAT
CAAAGTTCCACGAGGAAATGAAACTAAAGGAAAAGCAGCTCCAGGAACTG
AAAGCGGAACTAGCCGAAACTAAAGAGGAAACGAAGAAACATCTGATGGA
GACGGAGAAAATGCAAACGGAACTCGcggaaatcaaaaaagaaatgaaaa
aacaggAAACGGAAAAAGAGAAACAGATTAAAGAATTAAGAACGAATTTG
ACGGAGtgtgaagaaaaaatgaaggaaatgcGAACGGAACATGAGGAAAA
ACACAAAAGTTTGTTGGAAGAACTTCAAGTGAAAGATACgcgaattttca
ttttggaaGAGAAAATAAATGAGGTCGAGGAACACGGAAAGGGAAACGAA
AAAGAGATCGGAAAACTTGCATCCGAAATGAATATGAAAGCTGAGAAGCT
GATCGAGTTGGAATCAAGAATGAACGaacaaaaagagaaatataTCCAAC
TGTATTATCAAATTGGTGAGAAAGGTGAAAAAATATCACAAGTCGAAGAA
ATGTTATGGAAAAAATCGGGCGAAATTTCGGAAGTGATGCACATTGATCG
GGAAACAAGTGAACGACAATTCGGGGAAATCATGTTCAAGTTGAATGAAG
GTAAAAAGCTGACGCAAAGTGTCCTCACCGAgaaccgttgtccgttcgtt
tGGGAAGTAACCAATTTTAAGAAGGAATTTGCTGAATCGAAAGCAGAAAA
TAAAGCTATCATCACACCTGTGTTTTATTGTTTGAATGGATATAAAGGTC
GCTTACAGATATATTTGAATGGCACTCGAGAATGCAAAGATTCGTTCATT
TCAGTTTTCTTTGATCTGGTCGAGGGGCCTTTTGATGACACGTTAGCCTG
GCCGTTGCCTTATGAGAAATTCATCATCACACTCACCATAAACAATAAAC
AAGTGACGTCAAAAGCCATAGAAAGCACATTTTACGGGGGTATAGCGGGG
GAAGCTTACATTCGACCAACCAAGAAAGTGACCCCTGGTATAGGACCACG
CAACTTTTTATCGCACAAAGACTTGCCAAATAACATCAAGAATGATACAT
TGACatttaaatttgatattcaaTAATTCATTTTACTTTCGTTCTCCTGA
CCTAATCCAAGTTACCTGGTCATTCAATTAAATTGGAACTAACAGCTATT
CAGATTCATGGTATTGTGTTTTCAATATTATGTCATTACCTAGGTCGAGA
GTGTTGTCACTAAAATTCATTCACTAATTTTGTCTTGAGGCGAAAAATTC
TACGGGATACCTTATAGATGCTGTAACTTTCGATGCAAGTATTTTATGAG
AAAAAAC Coding sequence (CDS) from alignment at scaffold_364:160245..163451+ >TCONS_00062377 ID=TCONS_00062377|Name=TCONS_00062377|organism=Clytia hemisphaerica|type=CDS|length=1263bp|location=Sequence derived from alignment at scaffold_364:160245..163451+ (Clytia hemisphaerica)
ATGGCGTCTGAATCCGTTGATGTGCCTGAAGTTCAGGAGTTGCAGAATGA
AATACGAATAATGAAACATGATTTCGAAGACCAGATAAAAGAGAtaaaag
aaaaccttttgaaaGTTGTGCAAGGAAAAGTTGACGGCCATGAGAAATGG
ATTCGTCGAATTGAGTCTGATGCTGATACTAAGGAATCAAAGTTCCACGA
GGAAATGAAACTAAAGGAAAAGCAGCTCCAGGAACTGAAAGCGGAACTAG
CCGAAACTAAAGAGGAAACGAAGAAACATCTGATGGAGACGGAGAAAATG
CAAACGGAACTCGcggaaatcaaaaaagaaatgaaaaaacaggAAACGGA
AAAAGAGAAACAGATTAAAGAATTAAGAACGAATTTGACGGAGtgtgaag
aaaaaatgaaggaaatgcGAACGGAACATGAGGAAAAACACAAAAGTTTG
TTGGAAGAACTTCAAGTGAAAGATACgcgaattttcattttggaaGAGAA
AATAAATGAGGTCGAGGAACACGGAAAGGGAAACGAAAAAGAGATCGGAA
AACTTGCATCCGAAATGAATATGAAAGCTGAGAAGCTGATCGAGTTGGAA
TCAAGAATGAACGaacaaaaagagaaatataTCCAACTGTATTATCAAAT
TGGTGAGAAAGGTGAAAAAATATCACAAGTCGAAGAAATGTTATGGAAAA
AATCGGGCGAAATTTCGGAAGTGATGCACATTGATCGGGAAACAAGTGAA
CGACAATTCGGGGAAATCATGTTCAAGTTGAATGAAGGTAAAAAGCTGAC
GCAAAGTGTCCTCACCGAgaaccgttgtccgttcgtttGGGAAGTAACCA
ATTTTAAGAAGGAATTTGCTGAATCGAAAGCAGAAAATAAAGCTATCATC
ACACCTGTGTTTTATTGTTTGAATGGATATAAAGGTCGCTTACAGATATA
TTTGAATGGCACTCGAGAATGCAAAGATTCGTTCATTTCAGTTTTCTTTG
ATCTGGTCGAGGGGCCTTTTGATGACACGTTAGCCTGGCCGTTGCCTTAT
GAGAAATTCATCATCACACTCACCATAAACAATAAACAAGTGACGTCAAA
AGCCATAGAAAGCACATTTTACGGGGGTATAGCGGGGGAAGCTTACATTC
GACCAACCAAGAAAGTGACCCCTGGTATAGGACCACGCAACTTTTTATCG
CACAAAGACTTGCCAAATAACATCAAGAATGATACATTGACatttaaatt
tgatattcaaTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062377-exon-scaffold_364-1491911889:160245..160385 | TCONS_00062377-exon-scaffold_364-1491911889:160245..160385 | Clytia hemisphaerica | exon |
| TCONS_00062377-exon-scaffold_364-1510915933:160245..160385 | TCONS_00062377-exon-scaffold_364-1510915933:160245..160385 | Clytia hemisphaerica | exon |
| TCONS_00062377-exon-scaffold_364-1575043694:160245..160385 | TCONS_00062377-exon-scaffold_364-1575043694:160245..160385 | Clytia hemisphaerica | exon |
| TCONS_00062377-exon-scaffold_364-1491911889:161936..163451 | TCONS_00062377-exon-scaffold_364-1491911889:161936..163451 | Clytia hemisphaerica | exon |
| TCONS_00062377-exon-scaffold_364-1510915933:161936..163451 | TCONS_00062377-exon-scaffold_364-1510915933:161936..163451 | Clytia hemisphaerica | exon |
| TCONS_00062377-exon-scaffold_364-1575043694:161936..163451 | TCONS_00062377-exon-scaffold_364-1575043694:161936..163451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:160245..163451 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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