TCONS_00062383 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062383
Unique Name	TCONS_00062383
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1809

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_364:212106..216280+
coding sequence from alignment at scaffold_364:212106..216280+

transcript sequence

>TCONS_00062383 ID=TCONS_00062383|Name=TCONS_00062383|organism=Clytia hemisphaerica|type=transcript|length=1809bp
CAGGTTTTCACtgagaataaataaaaacattccAAAGTACGGCTTCTGAG
CAATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAAC
GTGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTT
ATGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGG
AACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTA
AAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATA
CACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGTAGGA
GAGTTTATTACTTTTCAACCAAACAATTTAGTGGGGGACTGGGCTACGAC
TATGAACAAGATATGGGCAATCTAAGCAAGCTTCCAAGACACATGAGTTT
TGTTATTAATGAAGATGTGACAACTGATTATTGTGACATTGCAAATTTGA
TTGTGTGGACCATAGCAATGGGAATTCCATATATTTCCCTATATGATCGC
CATGGCATTCTCAAAGCAGGAGAATCAAGGCTTGGAAAAGTCATCAAACA
AAAAGTTGTCAAAACATTTGGTCAGAAGAAAGCACAAGGAATTGATGTTG
TCCTGAAGGATAGTTCTTATAGATATCAAAATGGAATAAcaTACCCAAAG
AAGTTTTGTGTTCAGTTACTATCTGAAGAAGATGGCAAGGCAGACATTAT
TTCAACAACTAAAAGGATAGCAGCAGATTATGCAGACAATAATATAGAGG
AGAAGAATATAAATATTGACCATATCAATAAATCTCTGAAAGcaATTGAA
AATATACCAGACCCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACT
AAATGGTTATTTACCCTGGCAGACGAGATTATCAGAAATTCTGAATTTAA
AAACACACAAGAAGATATGTTACAGTCAATACTACAATCTACTTGCGCGC
TTCAGCAAATGTGATCAACGGTTCGGAAAATAATATTAAAAGAAACGAAG
AGTTAGTCTATTTTTATTGATTGATGGTGATCATAAACTGATGTTGCTTG
ATTCGCAATGTAACCCCAAAACTAGCCTctgtaatgaaaataaaattatt
tttagaacGTGGAGTGCATCAAGCCGATTCcgattttgaagaattttgtg
TTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGTTATTGGAACATTTTCG
AGCTTTCAGATCCTGAGTTCTTTGCAGGGAATActcctttttctcaaata
ttacgaatTTGATTGTAGGTCTGACATTATGAAAGGTTCTTTGTGACTAA
GCAACATCAGTTAGTACtttttgaattgcaaaaaatgttAAACAATTTCG
TTGTCCAATTTATTATTTCAGTAAACCAGCCTTTAATTTAAGAAACGCAA
CggcaattttgtaaatattgacTTTATTATCATAGTATCGAGATGATCAA
ACCAAGTTTGTGTGCAAACTAGGATAATCACGTTTtggaattattttgaa
tttttataataGTAGCAGAAAGTTTGGgatatattttaaaatttaggaaa
tttgtaaagctttttttCTCCCCTGTTGAAGTGGGAAAACCCCAttcttt
ctttaaattttgTTCTAGAAAGATGAATTAAGAATTTGAACTCTATTACT
GTTTCAATATTAATTCGTCTTTTGCTGTTGAGAAAAGAATGACTACTTCC
AGACTATAGccatctctctaattcgaatgctTCTGtaagtgtctgcccct
atatCTGGC

Run BLAST on NCBI

protein sequence of TCONS_00062383-protein

>TCONS_00062383-protein ID=TCONS_00062383-protein|Name=TCONS_00062383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MEELQGQSEIKPPSAHKLVKYFPQFTLKVLHMVVKYTLKYLLLILTLLAE
CRRVYYFSTKQFSGGLGYDYEQDMGNLSKLPRHMSFVINEDVTTDYCDIA
NLIVWTIAMGIPYISLYDRHGILKAGESRLGKVIKQKVVKTFGQKKAQGI
DVVLKDSSYRYQNGITYPKKFCVQLLSEEDGKADIISTTKRIAADYADNN
IEEKNINIDHINKSLKAIENIPDPELVVQFGNIYSLNGYLPWQTRLSEIL
NLKTHKKICYSQYYNLLARFSKCDQRFGK

Run BLAST on NCBI

transcript from alignment at scaffold_364:212106..216280+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062383 ID=TCONS_00062383|Name=TCONS_00062383|organism=Clytia hemisphaerica|type=transcript|length=4175bp|location=Sequence derived from alignment at scaffold_364:212106..216280+ (Clytia hemisphaerica)
CAGGTTTTCACtgagaataaataaaaacattccAAAGTACGGCTTCTGAG
CAATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAAC
GTGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTT
ATGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGG
AACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTA
AAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATA
CACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTAC
ATTGAAAGTCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTAT
TAATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACC
AAACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAA
TCTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGA
CAACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATG
GGAATTCCATATATTTCCCTATATGATCGCCATGGTAAGACTTTCATCAA
ATTCTAAAGCTGCCAAAAAGATTGGGGATATGTATACAcattctttttat
atatataagATTTCTACAACCTTCATTAAAGATGGTAGTAACAGGAAAGT
tagaatcgctgattgaaacttattttctttgcttagcgatcAGAGAGGAA
AATACCTTTTGTCtacagtgattccgaccttcctatcaTTCTAGGGTGTG
TtgaacattagaccaacttacggtataagGCTTGGatggccaatttctta
agaaaatggacaaaaatgctcacatggtgaaataaaaaaaatataaaaaa
aaacgtgtacagttgGGATAATGCTAGGCAGGGCTTACTACAGGCAGGCC
ATCTTGAGACGTCTGTTTTGTAAgagacaaaaatctaaaatcaaatctga
aacAGGGCGAGGGGGTTCATTCAGCTGGTACCAGCAGGTAACAGACATCA
TGAtggtcagtcaggcacatcctggcaaatgaacggggtatttttcactt
gcaattggtggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagca
ctgaataccccacgcaattgaaccgggttggaaatattttgcttcatttc
aaagaactgcatggaggaaattttttttccatgggtcaattttgtcttcg
aagattgaagaaacttttaacgaaaaaataaagttcccagttttcttcct
tttttcccattttcagtttgaagttcatttttattcattttcacgctttt
agcgtcctatctcatttacactgggtgacgaataccccatgcaaatgctc
accccgttcatttgccaggatgtgcctgactgatgGTTATACTGCCGTGG
ATATTTGCAtttgtaattttgctgaaagcTTATTTAAAaggaattttatt
ttgtaaCCATGAATTTTCTTTCAGGCATTCTCAAAGCAGGAGAATCAAGG
CTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAA
AGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAA
ATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTGCTgcgcaaattt
tgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaagGTGACAAATTG
ACCTGAATTGACACAAATCATAGAAAAAGTGCtatattcaaaaactttct
caaaattATCTGACCGGTATTATCAAAATTCTAAGAATCTGATGgagtgt
tttcttttctttcagcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCT
GAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGC
AGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACCATA
TCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCACTACGTGTTTGAA
ATGTCTAGGATATGCTTTGGTTATCTCtgtctttcttttctttggaAGTC
ACCTGAATGATTCGAGAGAGAGacccggggggggcagctgggcaaaagga
ccgacgggtatgtgcgggcactaagggtgtctttttcaaggcacctcaaa
tgcactgtaagggtcggaaaaactagNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTCAGGCATTCTCAAAGCA
GGAGAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATT
TGGTCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTT
ATAGATATCAAAATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTG
CTgcacaaattttgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaa
gGTGACAAATTGACCTGAATTGACACAAATCATAGAAAAAGTGCTATATA
CAAAAACTACCTCAAAATTATCTGACCGGTATTATCAAAATTCTAAGAAT
CTGATGgagtgttttcttttctttcagcaTACCCAAAGAAGTTTTGTGTT
CAGTTACTATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAA
AAGGATAGCAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAA
ATATTGACCATATCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCAC
TACTATTTGAAATGTCTAAGGATATGCTTTGGTTATCTCtgtctttcttt
tctttggaAGTCACCTGAATAATTCGAGAGAGAGAGGAGGAAAAATGAGG
TTTCAAATCAgcgttttattttctttttaagcaATTGAAAATATACCAGA
CCCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATT
TACCCTGGCAGACGAGATTATCAGAAATTCTGTAAGTAAAAGTGTACGCA
GGACCAGGAGAATCTCACAATACATTGAAATACAAAATGACCTAGTCGAA
TTAAAAGACCTCATTTGGTTTTCTTTAAGGGATAATCATGGGGATTTAAT
TTTATAAAATAGTTGTCCTGATTATTTGGTCGGAAATTGTAGACTTGTGT
AGATTTGCGATAatgtaatattttgattttgatgtttgttGTTTGTCTTG
TTTTGTAGGAATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTA
CAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAAT
ATTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGATTGATGGTGATCAT
AAACTGATGTTGCTTGATTCGCAATGTAACCCCAAAACTAGCCTctgtaa
tgaaaataaaattatttttagaacGTGGAGTGCATCAAGCCGATTCcgat
tttgaagaattttgtgTTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGT
TATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTCTTTGCAGGGAATAc
tcctttttctcaaatattacgaatTTGATTGTAGGTCTGACATTATGAAA
GGTTCTTTGTGACTAAGCAACATCAGTTAGTACtttttgaattgcaaaaa
atgttAAACAATTTCGTTGTCCAATTTATTATTTCAGTAAACCAGCCTTT
AATTTAAGAAACGCAACggcaattttgtaaatattgacTTTATTATCATA
GTATCGAGATGATCAAACCAAGTTTGTGTGCAAACTAGGATAATCACGTT
TtggaattattttgaatttttataataGTAGCAGAAAGTTTGGgatatat
tttaaaatttaggaaatttgtaaagctttttttCTCCCCTGTTGAAGTGG
GAAAACCCCAttctttctttaaattttgTTCTAGAAAGATGAATTAAGAA
TTTGAACTCTATTACTGTTTCAATATTAATTCGTCTTTTGCTGTTGAGAA
AAGAATGACTACTTCCAGACTATAGccatctctctaattcgaatgctTCT
GtaagtgtctgcccctatatCTGGC

Coding sequence (CDS) from alignment at scaffold_364:212106..216280+

>TCONS_00062383 ID=TCONS_00062383|Name=TCONS_00062383|organism=Clytia hemisphaerica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_364:212106..216280+ (Clytia hemisphaerica)
ATGGAGGAACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAA
ACTTGTAAAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCG
TCAAATACACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAA
TGTAGGAGAGTTTATTACTTTTCAACCAAACAATTTAGTGGGGGACTGGG
CTACGACTATGAACAAGATATGGGCAATCTAAGCAAGCTTCCAAGACACA
TGAGTTTTGTTATTAATGAAGATGTGACAACTGATTATTGTGACATTGCA
AATTTGATTGTGTGGACCATAGCAATGGGAATTCCATATATTTCCCTATA
TGATCGCCATGGCATTCTCAAAGCAGGAGAATCAAGGCTTGGAAAAGTCA
TCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAAAGCACAAGGAATT
GATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAAATGGAATAAcaTA
CCCAAAGAAGTTTTGTGTTCAGTTACTATCTGAAGAAGATGGCAAGGCAG
ACATTATTTCAACAACTAAAAGGATAGCAGCAGATTATGCAGACAATAAT
ATAGAGGAGAAGAATATAAATATTGACCATATCAATAAATCTCTGAAAGc
aATTGAAAATATACCAGACCCAGAGCTTGTTGTACAATTTGGAAATATCT
ATTCACTAAATGGTTATTTACCCTGGCAGACGAGATTATCAGAAATTCTG
AATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTACAATCTACT
TGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAAATGGAGGAAC
TACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTAAAG
TATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATACAC
TTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGTAGGAGAG
TTTATTACTTTTCAACCAAACAATTTAGTGGGGGACTGGGCTACGACTAT
GAACAAGATATGGGCAATCTAAGCAAGCTTCCAAGACACATGAGTTTTGT
TATTAATGAAGATGTGACAACTGATTATTGTGACATTGCAAATTTGATTG
TGTGGACCATAGCAATGGGAATTCCATATATTTCCCTATATGATCGCCAT
GGCATTCTCAAAGCAGGAGAATCAAGGCTTGGAAAAGTCATCAAACAAAA
AGTTGTCAAAACATTTGGTCAGAAGAAAGCACAAGGAATTGATGTTGTCC
TGAAGGATAGTTCTTATAGATATCAAAATGGAATAAcaTACCCAAAGAAG
TTTTGTGTTCAGTTACTATCTGAAGAAGATGGCAAGGCAGACATTATTTC
AACAACTAAAAGGATAGCAGCAGATTATGCAGACAATAATATAGAGGAGA
AGAATATAAATATTGACCATATCAATAAATCTCTGAAAGcaATTGAAAAT
ATACCAGACCCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACTAAA
TGGTTATTTACCCTGGCAGACGAGATTATCAGAAATTCTGAATTTAAAAA
CACACAAGAAGATATGTTACAGTCAATACTACAATCTACTTGCGCGCTTC
AGCAAATGTGATCAACGGTTCGGAAAATAAATGGAGGAACTACAAGGACA
GAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTAAAGTATTTCCCAC
AGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATACACTTTGAAATAT
TTACTATTAATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTT
TTCAACCAAACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATA
TGGGCAATCTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAA
GATGTGACAACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCAT
AGCAATGGGAATTCCATATATTTCCCTATATGATCGCCATGGCATTCTCA
AAGCAGGAGAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAA
ACATTTGGTCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAG
TTCTTATAGATATCAAAATGGAATAAcaTACCCAAAGAAGTTTTGTGTTC
AGTTACTATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAA
AGGATAGCAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAAA
TATTGACCATATCAATAAATCTCTGAAAGcaATTGAAAATATACCAGACC
CAGAGCTTGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATTTA
CCCTGGCAGACGAGATTATCAGAAATTCTGAATTTAAAAACACACAAGAA
GATATGTTACAGTCAATACTACAATCTACTTGCGCGCTTCAGCAAATGTG
ATCAACGGTTCGGAAAATAAATGGAGGAACTACAAGGACAGAGTGAAATT
AAGCCACCTTCAGCCCATAAACTTGTAAAGTATTTCCCACAGTTTACATT
GAAAGTCCTTCATATGGTCGTCAAATACACTTTGAAATATTTACTATTAA
TCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACCAAA
CAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAATCT
AAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGACAA
CTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATGGGA
ATTCCATATATTTCCCTATATGATCGCCATGGCATTCTCAAAGCAGGAGA
ATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTC
AGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGA
TATCAAAATGGAATAAcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATC
TGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAG
CAGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACCAT
ATCAATAAATCTCTGAAAGcaATTGAAAATATACCAGACCCAGAGCTTGT
TGTACAATTTGGAAATATCTATTCACTAAATGGTTATTTACCCTGGCAGA
CGAGATTATCAGAAATTCTGAATTTAAAAACACACAAGAAGATATGTTAC
AGTCAATACTACAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTT
CGGAAAATAAATGGAGGAACTACAAGGACAGAGTGAAATTAAGCCACCTT
CAGCCCATAAACTTGTAAAGTATTTCCCACAGTTTACATTGAAAGTCCTT
CATATGGTCGTCAAATACACTTTGAAATATTTACTATTAATCCTGACATT
ACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACCAAACAATTTAGTG
GGGGACTGGGCTACGACTATGAACAAGATATGGGCAATCTAAGCAAGCTT
CCAAGACACATGAGTTTTGTTATTAATGAAGATGTGACAACTGATTATTG
TGACATTGCAAATTTGATTGTGTGGACCATAGCAATGGGAATTCCATATA
TTTCCCTATATGATCGCCATGGCATTCTCAAAGCAGGAGAATCAAGGCTT
GGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAAAGC
ACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAAATG
GAATAAcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCTGAAGAAGAT
GGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGCAGATTATGC
AGACAATAATATAGAGGAGAAGAATATAAATATTGACCATATCAATAAAT
CTCTGAAAGcaATTGAAAATATACCAGACCCAGAGCTTGTTGTACAATTT
GGAAATATCTATTCACTAAATGGTTATTTACCCTGGCAGACGAGATTATC
AGAAATTCTGAATTTAAAAACACACAAGAAGATATGTTACAGTCAATACT
ACAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAA
ATGGAGGAACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAA
ACTTGTAAAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCG
TCAAATACACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAA
TGTAGGAGAGTTTATTACTTTTCAACCAAACAATTTAGTGGGGGACTGGG
CTACGACTATGAACAAGATATGGGCAATCTAAGCAAGCTTCCAAGACACA
TGAGTTTTGTTATTAATGAAGATGTGACAACTGATTATTGTGACATTGCA
AATTTGATTGTGTGGACCATAGCAATGGGAATTCCATATATTTCCCTATA
TGATCGCCATGGCATTCTCAAAGCAGGAGAATCAAGGCTTGGAAAAGTCA
TCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAAAGCACAAGGAATT
GATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAAATGGAATAAcaTA
CCCAAAGAAGTTTTGTGTTCAGTTACTATCTGAAGAAGATGGCAAGGCAG
ACATTATTTCAACAACTAAAAGGATAGCAGCAGATTATGCAGACAATAAT
ATAGAGGAGAAGAATATAAATATTGACCATATCAATAAATCTCTGAAAGc
aATTGAAAATATACCAGACCCAGAGCTTGTTGTACAATTTGGAAATATCT
ATTCACTAAATGGTTATTTACCCTGGCAGACGAGATTATCAGAAATTCTG
AATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTACAATCTACT
TGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039091	XLOC_039091	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062383-protein	TCONS_00062383-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_364	supercontig	scaffold_364:212106..216280 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.2149	68.1441	30.0171	25.4879	26.6729	19.6123	25.1295	25.6778	13.7896	11.8499	14.8043	13.0618	11.8123	11.7465	12.956	13.4579	14.3236	15.1845	9.0512	12.567	17.1419	17.1914	38.7459	35.7919	8.48712	11.3884	19.6716	17.149	34.4676	33.2151

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001441	UPP_synth-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Blast

[Close]

BLAST of TCONS_00062383 vs. Swiss-Prot (Human)
Match: NGBR (Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.537e-32
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 2

Query:  401 YEQDMGNLSKLPRHMSFVINE-DVTTDYCDIANLIVWTIAMGIPYISLYDRHGILKAGESRL-GKVIKQKVVKTFGQKKAQGIDVVLKDSSYRYQNGITYPKKFC---VQLLSEEDGKADIISTTKRIAADYAXXXXXXXXXXXXXXXXSLKAI---ENIPDPELVVQFGNIYSLNGYLPWQTRLSEILNLKTHKKICYSQYYNLLARFSKCDQRFGK 1030
            +  D  +L KLP HM  VI E +    + DIA+L+VW +A+GI YIS+YD  GI K   SRL  +++KQ       Q++  G+D       +   N        C   V++LS EDGKADI+    R A D+     +++    D    +L ++      PDP+LV++FG + S  G+LPW  RL+EI++L +H  I Y  +++ L +++ C+QR GK
Sbjct:   87 WRADGRSLEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQ-------QQELLGLDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIV----RAAQDFCQLVAQKQKRPTDLDVDTLASLLSSNGCPDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 293

The following BLAST results are available for this feature:

BLAST of TCONS_00062383 vs. Swiss-Prot (Human)

BLAST of TCONS_00062383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NGBR	1.537e-32	35.78	Dehydrodolichyl diphosphate synthase complex subun...	[more]

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TCONS_00062383 (transcript) - C. hemisphaerica