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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062465 ID=TCONS_00062465|Name=TCONS_00062465|organism=Clytia hemisphaerica|type=transcript|length=3570bp GTTTGATTCGAAAACTAATTTTCTGAAACCTCAGTCAAAATAGTATTTGT GTAGAGGAGTGTCTTGTGTATTTTTTATGCAAGAGCACATGAAAAAGTCG GATATTTGAAATAAAggtaaaaatttacaatttcataaatATATTATAGA GTTACAATACCACTATAAACTGTGAACATATTAACTTTTGAGGAATCCTC TTTGTGCTGGgcaaaaaatacaataatttTACTCAACATCGGGTAGTTTG ATAAAGTCACATAATCATCAATCTGGTAATCTGGAGTGCAGCATTGACAT GCAGCATGGTTGAACGGTTTTATGACGTCTGACATAGGGCATATGTTTAC ACTAAAAGTTTTATAGTCATAATCATCACAAGGACAAAAATATTCTGCCC AAGCCTTTAgttttcttgagaaaaaatcatcaataGTAATGGGGAAAACC TTCAGCTTAATTTTACTGAAATCTGCAACTAAATGGTTAAACACGTGGCT AGAGCAGTTTTTACTGTGCTTACCTCCCAAATGTTGAAACATAAAACAAG TACAATAGCCATCTTCTTTTGAAATCTTTGTAGGTTCATTCATTTTTCTA ATAATAGCTGCACCTGGAAAACAATCTTTCTGTATTGTAATGTTTTCATC GACCAATTTTTGCTTCTCAATCTTTTGAAATGAGAAGTCTTcaccatcag aatcatcatATATATTACTTCTCCAAACAACACTTTCTTTATCACGATCT TTATAGCAGTCAAGATCTCCCTTATTGCATTCAACCTGATCATCTGGATA AAAACCATCATCTTCAGAATAAGTTATGAGTTTGAAATCTCTAGCTCCTT TCTCATAAAGTTCATCATGTGGTTCATCACGAGGAAGCTCATTTTTACAA TATTCATAATAGCGATCATAGGAATTCAGCATATTCCTCACTTCCAGATC CCTGACAGCTAGTGGTAAGTCTACAAAGAGGTTATCTCTATCGTCTCCAT CTCCTGTTTCAGACAAAATTGTAATCTTTGATCTAAATTCAGATTGCATA TCTATCCCAATATCATCTCGATCAAAGTACTTTGCCATGTAATTTCTATC AACACTGTGATACAAATCTTTATTTggatctttttccttttttctttgcG CAACTTTGAAGATGGTACCGTGGACAGGTTCCTCAGCAAATACACCATAA AGAAGATCTCTTAACTGAACAGTTGTTGCACTCCTTGTTTCTCTATCATA ATTCACCAAATAGTGTTTATCATTGGGTGCATTTCCGAGTAAACACATTG AATACACTGCTGCAACTTTGGCAAATTCGTTCATATTGTTGTTAACAAAG TTTACATTTTGAGATATTGAAAAATTTGTATAAACACCACTACTGTAAAT AGTCTCAGGAACAACTCTATCAAAGAATAGCTTTTTCTTCTCAGACTTCA AGAAGGGAAACACTTTACAGAGATTGTTCAAAGACTTGATGTCAACaata tatttcattattttaagcCAAATCTCTTTCGAAAAAATGTTTGGTAAAGA CAAATTTTCAATAGCCTCCATTGAATTATTATCCTTGTCAGGGGCTGCAA CATCTGAAAAATCCCTATGTTGCCTGGGTAAGTTTTCCTCAAATTGTTCT TCCTTAGGGTAATTATATCGAATAGACAAGCTCTTTTCATAGCAGTCATT AGCTCTTGCTGTATTTTCAGCTAATTCACATTGCTGAGCTTCTCGAAATA ATTGAAGACATTCAAAATAGTCTTGAAGCTCTGCCACAGGTGGAGAAAAT CCAAGTTTGACAGGGCGCTCAACCATAATATCAGTTTTAATAATATATTT ATAATTGGTACTTTCTGAATGTAAAGGGTAACCTTGATGCAGAATATTTT GTTTGAAGATCAAACATGTACCTGTTTGTGGTTTAATGGAGATGTGGTCA AATCCATGAAAAATATTACcatgaaattgaatttctttactGATTGTTTG ACCTTTGGTATCAgttgaaatgttttttggaaaatgtaaaATTGTTTGAC CTCCTTCAAAATCATCATTCAAATAGATAAGCATAGTATACAAAGATCTT TTATCACCATTAGGACAGAATGGAGCATCTCTGTGCGGACCaaaaaattc cttatttttcccACTGTATCTGTTTAAACGCATGGCTTGATTAATTCCAG ATAATTTCCAATTGCCTCTTGAAGCATCAAAACCAAAAGGATGAACTGGA TTATCTCCTAATTTATCTACAAATTGTTCTGACAAATTTTTCCAAAGAAA GTCAGCAAAGTTCTCATCAAACAAAACTAGACGAGAATTATTTCTTTCTT CGCCATAACAACATagttgaaaatttaatttctctgcctttgttattatt tttttacactGACTTTTTGACAAAAGATTCTTGCAAGAAAATACACTAGG GTGAATCTCATCCAATATCGTGTTATTGAAAACAGTGTTTCCAAGTTCAG TGTTATCGAGGAATTGAAAGTGTTCTCCCCAATCAGTTGTACGTAAAGAT GTTTCTGCTAGGAGGTACGGTTTGCCGATCATGTCAGGAAAAACATTGTT GTGGTGTATACTTTTGATATTATTATacattattttaattactttctCCT CCTAGAAAAGATTAATTCACTTTAATAAGAGTGAGAATCAGCTAACTTTT GCCTTAACAAGCAACACACTGAATGGACATACCTGATGAAATCAAACCAT GCTAAATTCTGGGTATAAACATAGAAAGTCCTTTCCACCCACCGCACCAT GTATAGATAACTCAAGAaaatctaatgaagcaattttgacaaaagcccaa aatttggccaaaatttgccaacatttttgaggattacaaaCAACTATGCA TCATTCtgtaaaatatcagaaaaaaaattgagaagatTGTTACTAAAATC CAAGAAATTTTCCACTAATCCTATTCATTCTTTTTTCGTTATCGGAATTA AACATCCTGAACCTCCCACAGCTAAAAGTCATTGGAGAAGTGTACAAATG ACAAAGATCAAAGGAATCCATCTCCCGGACCTCCCAAACCTCCCACAGCT AAAAAGTCATTAGAGAAGTGTACAGAGATCAACGGGATCATCTCCCGGAC CTCCCAAACCTCCCATAGCCAAAAAACCTCTGGAGAAGTGTACAGAGATC AAAGGAATCCATCTCCCGGACCTCCCAAACCTCCCACAGCTAAAAAGTCA CTAGAGAAGTGTACAAAGATTAAAACTTCTCTGTGTACACTTCTCTAATG ACTACGACCCTcaacatggcccgagaattctcgggccaaaacttttattg gaattcgcgtaaagcccgagagctggcccgagaattcgggctgtgttcgg gccacacgcgggccacgcacgggccaatttttgaaaacatgatttaaaca ggcgtgtaatttcagaactgaattttttttacattttctttgagaaaaac ttggtttctcttaattatattttaaatatatgaatgttgtaaattcatat atataaatattaaatgtctt Run BLAST on NCBI protein sequence of TCONS_00062465-protein >TCONS_00062465-protein ID=TCONS_00062465-protein|Name=TCONS_00062465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MYNNIKSIHHNNVFPDMIGKPYLLAETSLRTTDWGEHFQFLDNTELGNTV FNNTILDEIHPSVFSCKNLLSKSQCKKIITKAEKLNFQLCCYGEERNNSR LVLFDENFADFLWKNLSEQFVDKLGDNPVHPFGFDASRGNWKLSGINQAM RLNRYSGKNKEFFGPHRDAPFCPNGDKRSLYTMLIYLNDDFEGGQTILHF PKNISTDTKGQTISKEIQFHGNIFHGFDHISIKPQTGTCLIFKQNILHQG YPLHSESTNYKYIIKTDIMVERPVKLGFSPPVAELQDYFECLQLFREAQQ CELAENTARANDCYEKSLSIRYNYPKEEQFEENLPRQHRDFSDVAAPDKD NNSMEAIENLSLPNIFSKEIWLKIMKYIVDIKSLNNLCKVFPFLKSEKKK LFFDRVVPETIYSSGVYTNFSISQNVNFVNNNMNEFAKVAAVYSMCLLGN APNDKHYLVNYDRETRSATTVQLRDLLYGVFAEEPVHGTIFKVAQRKKEK DPNKDLYHSVDRNYMAKYFDRDDIGIDMQSEFRSKITILSETGDGDDRDN LFVDLPLAVRDLEVRNMLNSYDRYYEYCKNELPRDEPHDELYEKGARDFK LITYSEDDGFYPDDQVECNKGDLDCYKDRDKESVVWRSNIYDDSDGEDFS FQKIEKQKLVDENITIQKDCFPGAAIIRKMNEPTKISKEDGYCTCFMFQH LGGKHSKNCSSHVFNHLVADFSKIKLKVFPITIDDFFSRKLKAWAEYFCP CDDYDYKTFSVNICPMSDVIKPFNHAACQCCTPDYQIDDYVTLSNYPMLS KIIVFFAQHKEDSSKVNMFTVYSGIVTL Run BLAST on NCBI transcript from alignment at scaffold_364:356604..360173 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062465 ID=TCONS_00062465|Name=TCONS_00062465|organism=Clytia hemisphaerica|type=transcript|length=3570bp|location=Sequence derived from alignment at scaffold_364:356604..360173 (Clytia hemisphaerica) aagacatttaatatttatatatatgaatttacaacattcatatatttaaa
atataattaagagaaaccaagtttttctcaaagaaaatgtaaaaaaaatt
cagttctgaaattacacgcctgtttaaatcatgttttcaaaaattggccc
gtgcgtggcccgcgtgtggcccgaacacagcccgaattctcgggccagct
ctcgggctttacgcgaattccaataaaagttttggcccgagaattctcgg
gccatgttgAGGGTCGTAGTCATTAGAGAAGTGTACACAGAGAAGTTTTA
ATCTTTGTACACTTCTCTAGTGACTTTTTAGCTGTGGGAGGTTTGGGAGG
TCCGGGAGATGGATTCCTTTGATCTCTGTACACTTCTCCAGAGGTTTTTT
GGCTATGGGAGGTTTGGGAGGTCCGGGAGATGATCCCGTTGATCTCTGTA
CACTTCTCTAATGACTTTTTAGCTGTGGGAGGTTTGGGAGGTCCGGGAGA
TGGATTCCTTTGATCTTTGTCATTTGTACACTTCTCCAATGACTTTTAGC
TGTGGGAGGTTCAGGATGTTTAATTCCGATAACGAAAAAAGAATGAATAG
GATTAGTGGAAAATTTCTTGGATTTTAGTAACAatcttctcaattttttt
tctgatattttacaGAATGATGCATAGTTGtttgtaatcctcaaaaatgt
tggcaaattttggccaaattttgggcttttgtcaaaattgcttcattaga
tttTCTTGAGTTATCTATACATGGTGCGGTGGGTGGAAAGGACTTTCTAT
GTTTATACCCAGAATTTAGCATGGTTTGATTTCATCAGGTATGTCCATTC
AGTGTGTTGCTTGTTAAGGCAAAAGTTAGCTGATTCTCACTCTTATTAAA
GTGAATTAATCTTTTCTAGGAGGagaaagtaattaaaataatgtATAATA
ATATCAAAAGTATACACCACAACAATGTTTTTCCTGACATGATCGGCAAA
CCGTACCTCCTAGCAGAAACATCTTTACGTACAACTGATTGGGGAGAACA
CTTTCAATTCCTCGATAACACTGAACTTGGAAACACTGTTTTCAATAACA
CGATATTGGATGAGATTCACCCTAGTGTATTTTCTTGCAAGAATCTTTTG
TCAAAAAGTCagtgtaaaaaaataataacaaaggcagagaaattaaattt
tcaactATGTTGTTATGGCGAAGAAAGAAATAATTCTCGTCTAGTTTTGT
TTGATGAGAACTTTGCTGACTTTCTTTGGAAAAATTTGTCAGAACAATTT
GTAGATAAATTAGGAGATAATCCAGTTCATCCTTTTGGTTTTGATGCTTC
AAGAGGCAATTGGAAATTATCTGGAATTAATCAAGCCATGCGTTTAAACA
GATACAGTgggaaaaataaggaattttttGGTCCGCACAGAGATGCTCCA
TTCTGTCCTAATGGTGATAAAAGATCTTTGTATACTATGCTTATCTATTT
GAATGATGATTTTGAAGGAGGTCAAACAATtttacattttccaaaaaaca
tttcaacTGATACCAAAGGTCAAACAATCagtaaagaaattcaatttcat
gGTAATATTTTTCATGGATTTGACCACATCTCCATTAAACCACAAACAGG
TACATGTTTGATCTTCAAACAAAATATTCTGCATCAAGGTTACCCTTTAC
ATTCAGAAAGTACCAATTATAAATATATTATTAAAACTGATATTATGGTT
GAGCGCCCTGTCAAACTTGGATTTTCTCCACCTGTGGCAGAGCTTCAAGA
CTATTTTGAATGTCTTCAATTATTTCGAGAAGCTCAGCAATGTGAATTAG
CTGAAAATACAGCAAGAGCTAATGACTGCTATGAAAAGAGCTTGTCTATT
CGATATAATTACCCTAAGGAAGAACAATTTGAGGAAAACTTACCCAGGCA
ACATAGGGATTTTTCAGATGTTGCAGCCCCTGACAAGGATAATAATTCAA
TGGAGGCTATTGAAAATTTGTCTTTACCAAACATTTTTTCGAAAGAGATT
TGgcttaaaataatgaaatatattGTTGACATCAAGTCTTTGAACAATCT
CTGTAAAGTGTTTCCCTTCTTGAAGTCTGAGAAGAAAAAGCTATTCTTTG
ATAGAGTTGTTCCTGAGACTATTTACAGTAGTGGTGTTTATACAAATTTT
TCAATATCTCAAAATGTAAACTTTGTTAACAACAATATGAACGAATTTGC
CAAAGTTGCAGCAGTGTATTCAATGTGTTTACTCGGAAATGCACCCAATG
ATAAACACTATTTGGTGAATTATGATAGAGAAACAAGGAGTGCAACAACT
GTTCAGTTAAGAGATCTTCTTTATGGTGTATTTGCTGAGGAACCTGTCCA
CGGTACCATCTTCAAAGTTGCgcaaagaaaaaaggaaaaagatccAAATA
AAGATTTGTATCACAGTGTTGATAGAAATTACATGGCAAAGTACTTTGAT
CGAGATGATATTGGGATAGATATGCAATCTGAATTTAGATCAAAGATTAC
AATTTTGTCTGAAACAGGAGATGGAGACGATAGAGATAACCTCTTTGTAG
ACTTACCACTAGCTGTCAGGGATCTGGAAGTGAGGAATATGCTGAATTCC
TATGATCGCTATTATGAATATTGTAAAAATGAGCTTCCTCGTGATGAACC
ACATGATGAACTTTATGAGAAAGGAGCTAGAGATTTCAAACTCATAACTT
ATTCTGAAGATGATGGTTTTTATCCAGATGATCAGGTTGAATGCAATAAG
GGAGATCTTGACTGCTATAAAGATCGTGATAAAGAAAGTGTTGTTTGGAG
AAGTAATATATatgatgattctgatggtgAAGACTTCTCATTTCAAAAGA
TTGAGAAGCAAAAATTGGTCGATGAAAACATTACAATACAGAAAGATTGT
TTTCCAGGTGCAGCTATTATTAGAAAAATGAATGAACCTACAAAGATTTC
AAAAGAAGATGGCTATTGTACTTGTTTTATGTTTCAACATTTGGGAGGTA
AGCACAGTAAAAACTGCTCTAGCCACGTGTTTAACCATTTAGTTGCAGAT
TTCAGTAAAATTAAGCTGAAGGTTTTCCCCATTACtattgatgatttttt
ctcaagaaaacTAAAGGCTTGGGCAGAATATTTTTGTCCTTGTGATGATT
ATGACTATAAAACTTTTAGTGTAAACATATGCCCTATGTCAGACGTCATA
AAACCGTTCAACCATGCTGCATGTCAATGCTGCACTCCAGATTACCAGAT
TGATGATTATGTGACTTTATCAAACTACCCGATGTTGAGTAaaattattg
tattttttgcCCAGCACAAAGAGGATTCCTCAAAAGTTAATATGTTCACA
GTTTATAGTGGTATTGTAACTCTATAATATatttatgaaattgtaaattt
ttaccTTTATTTCAAATATCCGACTTTTTCATGTGCTCTTGCATAAAAAA
TACACAAGACACTCCTCTACACAAATACTATTTTGACTGAGGTTTCAGAA
AATTAGTTTTCGAATCAAAC Coding sequence (CDS) from alignment at scaffold_364:356604..360173 >TCONS_00062465 ID=TCONS_00062465|Name=TCONS_00062465|organism=Clytia hemisphaerica|type=CDS|length=2487bp|location=Sequence derived from alignment at scaffold_364:356604..360173 (Clytia hemisphaerica) atgtATAATAATATCAAAAGTATACACCACAACAATGTTTTTCCTGACAT GATCGGCAAACCGTACCTCCTAGCAGAAACATCTTTACGTACAACTGATT GGGGAGAACACTTTCAATTCCTCGATAACACTGAACTTGGAAACACTGTT TTCAATAACACGATATTGGATGAGATTCACCCTAGTGTATTTTCTTGCAA GAATCTTTTGTCAAAAAGTCagtgtaaaaaaataataacaaaggcagaga aattaaattttcaactATGTTGTTATGGCGAAGAAAGAAATAATTCTCGT CTAGTTTTGTTTGATGAGAACTTTGCTGACTTTCTTTGGAAAAATTTGTC AGAACAATTTGTAGATAAATTAGGAGATAATCCAGTTCATCCTTTTGGTT TTGATGCTTCAAGAGGCAATTGGAAATTATCTGGAATTAATCAAGCCATG CGTTTAAACAGATACAGTgggaaaaataaggaattttttGGTCCGCACAG AGATGCTCCATTCTGTCCTAATGGTGATAAAAGATCTTTGTATACTATGC TTATCTATTTGAATGATGATTTTGAAGGAGGTCAAACAATtttacatttt ccaaaaaacatttcaacTGATACCAAAGGTCAAACAATCagtaaagaaat tcaatttcatgGTAATATTTTTCATGGATTTGACCACATCTCCATTAAAC CACAAACAGGTACATGTTTGATCTTCAAACAAAATATTCTGCATCAAGGT TACCCTTTACATTCAGAAAGTACCAATTATAAATATATTATTAAAACTGA TATTATGGTTGAGCGCCCTGTCAAACTTGGATTTTCTCCACCTGTGGCAG AGCTTCAAGACTATTTTGAATGTCTTCAATTATTTCGAGAAGCTCAGCAA TGTGAATTAGCTGAAAATACAGCAAGAGCTAATGACTGCTATGAAAAGAG CTTGTCTATTCGATATAATTACCCTAAGGAAGAACAATTTGAGGAAAACT TACCCAGGCAACATAGGGATTTTTCAGATGTTGCAGCCCCTGACAAGGAT AATAATTCAATGGAGGCTATTGAAAATTTGTCTTTACCAAACATTTTTTC GAAAGAGATTTGgcttaaaataatgaaatatattGTTGACATCAAGTCTT TGAACAATCTCTGTAAAGTGTTTCCCTTCTTGAAGTCTGAGAAGAAAAAG CTATTCTTTGATAGAGTTGTTCCTGAGACTATTTACAGTAGTGGTGTTTA TACAAATTTTTCAATATCTCAAAATGTAAACTTTGTTAACAACAATATGA ACGAATTTGCCAAAGTTGCAGCAGTGTATTCAATGTGTTTACTCGGAAAT GCACCCAATGATAAACACTATTTGGTGAATTATGATAGAGAAACAAGGAG TGCAACAACTGTTCAGTTAAGAGATCTTCTTTATGGTGTATTTGCTGAGG AACCTGTCCACGGTACCATCTTCAAAGTTGCgcaaagaaaaaaggaaaaa gatccAAATAAAGATTTGTATCACAGTGTTGATAGAAATTACATGGCAAA GTACTTTGATCGAGATGATATTGGGATAGATATGCAATCTGAATTTAGAT CAAAGATTACAATTTTGTCTGAAACAGGAGATGGAGACGATAGAGATAAC CTCTTTGTAGACTTACCACTAGCTGTCAGGGATCTGGAAGTGAGGAATAT GCTGAATTCCTATGATCGCTATTATGAATATTGTAAAAATGAGCTTCCTC GTGATGAACCACATGATGAACTTTATGAGAAAGGAGCTAGAGATTTCAAA CTCATAACTTATTCTGAAGATGATGGTTTTTATCCAGATGATCAGGTTGA ATGCAATAAGGGAGATCTTGACTGCTATAAAGATCGTGATAAAGAAAGTG TTGTTTGGAGAAGTAATATATatgatgattctgatggtgAAGACTTCTCA TTTCAAAAGATTGAGAAGCAAAAATTGGTCGATGAAAACATTACAATACA GAAAGATTGTTTTCCAGGTGCAGCTATTATTAGAAAAATGAATGAACCTA CAAAGATTTCAAAAGAAGATGGCTATTGTACTTGTTTTATGTTTCAACAT TTGGGAGGTAAGCACAGTAAAAACTGCTCTAGCCACGTGTTTAACCATTT AGTTGCAGATTTCAGTAAAATTAAGCTGAAGGTTTTCCCCATTACtattg atgattttttctcaagaaaacTAAAGGCTTGGGCAGAATATTTTTGTCCT TGTGATGATTATGACTATAAAACTTTTAGTGTAAACATATGCCCTATGTC AGACGTCATAAAACCGTTCAACCATGCTGCATGTCAATGCTGCACTCCAG ATTACCAGATTGATGATTATGTGACTTTATCAAACTACCCGATGTTGAGT AaaattattgtattttttgcCCAGCACAAAGAGGATTCCTCAAAAGTTAA TATGTTCACAGTTTATAGTGGTATTGTAACTCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062465-exon-scaffold_364-1491911889:356604..360173 | TCONS_00062465-exon-scaffold_364-1491911889:356604..360173 | Clytia hemisphaerica | exon |
TCONS_00062465-exon-scaffold_364-1510915933:356604..360173 | TCONS_00062465-exon-scaffold_364-1510915933:356604..360173 | Clytia hemisphaerica | exon |
TCONS_00062465-exon-scaffold_364-1575043694:356604..360173 | TCONS_00062465-exon-scaffold_364-1575043694:356604..360173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_364 | supercontig | scaffold_364:356604..360173 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006620 | Pro_4_hyd_alph |
IPR005123 | Oxoglu/Fe-dep_dioxygenase |
Vocabulary: Molecular Function
Term | Definition |
GO:0005506 | iron ion binding |
GO:0031418 | L-ascorbic acid binding |
GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
molecular_function |
GO:0005506 |
iron ion binding |
molecular_function |
GO:0031418 |
L-ascorbic acid binding |
molecular_function |
GO:0016491 |
oxidoreductase activity |
molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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