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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062502 ID=TCONS_00062502|Name=TCONS_00062502|organism=Clytia hemisphaerica|type=transcript|length=4372bpRun BLAST on NCBI protein sequence of TCONS_00062502-protein >TCONS_00062502-protein ID=TCONS_00062502-protein|Name=TCONS_00062502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp MEDFVIAVKVFCQDQNWKGLGDYINESVPLITKNASKIDSAISALDAKDHRun BLAST on NCBI transcript from alignment at scaffold_367:5886..110306+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062502 ID=TCONS_00062502|Name=TCONS_00062502|organism=Clytia hemisphaerica|type=transcript|length=104421bp|location=Sequence derived from alignment at scaffold_367:5886..110306+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_367:5886..110306+ >TCONS_00062502 ID=TCONS_00062502|Name=TCONS_00062502|organism=Clytia hemisphaerica|type=CDS|length=17682bp|location=Sequence derived from alignment at scaffold_367:5886..110306+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062502 vs. Swiss-Prot (Human)
Match: CSN3 (COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3) HSP 1 Score: 384.03 bits (985), Expect = 1.471e-119 Identity = 202/415 (48.67%), Postives = 284/415 (68.43%), Query Frame = 1
Query: 502 MEDFVIAVKVFCQDQNWKGLGDYINESVPLITKNASKIDSAISALDAKDHTLGYLGLIVIKLSLPNIGDFELFFNQVAQLIEGGCQTQIQSQGVDKFTHICHCLVKILVEQRKAFRGIYLIDQAIQKIQESPSQLTSLHPDFLQLCLVAKCMKPAIKYLNIDIASI--QESAKDAKIFXXXXXXXXXXXXXXKQYEKALFFFQVAVTTPCMVISQIMLEAYKKFLLLSIFIHGKIVALPKYTSSVVSRYLKPLSNAYWELADAYSKHDADGVTAIANKHQQTFQNDNNVGIVKQVISSLTKKRIQKLTKTFLTLSLVDMASRVKLRNADEAEKYLLEMIEDGSIYATIDQQAGMVSFQNNPDRFNSNNVLEKIHSEMEKCIRMNEQLITMDNDMQQNQQYVHKMMSMTHLDDTNR 1740
+E FV +V+ L + IN+S L+ KN S +D+ + ALD ++H+LG L ++ +K S+P++ DFE F+QV QL C + D F +CH L LVE+++ RGI ++ QAI K+Q + +QLTS+H D QLCL+AKC KPA+ YL++D+ I + A DAK FL YYYYGGM+Y LK +E+AL+F++ A+TTP M +S IMLE+YKK++L+S+ + GK+ LPKYTS +V R++KPLSNAY ELA YS ++ + + NKH +TF DNN+G+VKQ +SSL KK IQ+LTKTFLTLSL DMASRV+L EAEKY+L MIEDG I+A+I+Q+ GMVSF +NP+++N+ +L I EM KCI ++E+L MD ++ N Q+V K M D N+
Sbjct: 5 LEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSVPDFETLFSQV-QLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNK 418 The following BLAST results are available for this feature:
BLAST of TCONS_00062502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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