TCONS_00062558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062558
Unique NameTCONS_00062558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062558 ID=TCONS_00062558|Name=TCONS_00062558|organism=Clytia hemisphaerica|type=transcript|length=982bp
GGAGCCTGTTTCTTTTTACCATTCTTTCCCAATCGAATAGGACCTCTTCT
CCAGATGTCATTTTAATCCATCTGATTACCATCTGGTCATCCATCAAAAT
AGTAGGAGGACCATACAGTTGTGCNCTGATTACCATCTGGTCATCCATCA
AAATAGTAGGAGGAGCATACAGTTGTGATTTGACAAACAACATACCCATG
TCTTGGACAGCTGTCTGAAACACATCTGTTACGTGTtagttttaatattt
tgttgtCTGAAATCAAACCCTAAACTTTACATTGCTACTCTTTTTCTCCT
CGATAATAATACAGAGCTTTTTCAAGTAAATTTAGTGAATAATTTATAAC
AGTAAGTATTGTTCACTACTAGgctaatataaaaaaaaagaaacaaaaag
ttgTTGGTGGCAGGTTATGTCTCGCCACGAAGGTGTGAGTTGTGATTCAT
gtaacaaaggaaattttcgtgGAAAACGATATAaatgtttgatttgtttt
gattacGATTTATGTTCGAATTGTCATGATGCTGGGacaacaacaacaca
acacACCTCAAATCATCCAATGCAGTGTATTATAACCAGATCTGATTTTG
aaTTATTTTATGGTGGTGAATCTTTGCAGTATGACAACCCAGCCTCCTAC
TCATTTGTTTGTCCTCACTGTGGCAAACTTGGTTACAGTGAGCTCCAGTT
ATTGGAACATGTCAATACAGACCATAGTTCTGTATCTACTGAAGTGGTAA
GTGAGAAAAAACTCATTGCAACTTTGTTATAAATTCTTTTCTCCATTTCC
TTTAATATTTTCAGATATTTGTTGATATGACCAATGGATTGTTTTAGAGG
GACTGGCTCCCCctaaaaagaacattttaacacCTTTATAGAAAGTACAT
AGAATCAATTTTCCTTGGCAAATACATGGAATCGAATCACTCCATTTTCC
TATGGACATACATTGAATGAAATCACTTCGTT
Run BLAST on NCBI

protein sequence of TCONS_00062558-protein

>TCONS_00062558-protein ID=TCONS_00062558-protein|Name=TCONS_00062558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MSRHEGVSCDSCNKGNFRGKRYKCLICFDYDLCSNCHDAGTTTTQHTSNH
PMQCIITRSDFELFYGGESLQYDNPASYSFVCPHCGKLGYSELQLLEHVN
TDHSSVSTEVVSEKKLIATLL
Run BLAST on NCBI

transcript from alignment at scaffold_369:245770..248226+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062558 ID=TCONS_00062558|Name=TCONS_00062558|organism=Clytia hemisphaerica|type=transcript|length=2457bp|location=Sequence derived from alignment at scaffold_369:245770..248226+ (Clytia hemisphaerica)
GGAGCCTGTTTCTTTTTACCATTCTTTCCCAATCGAATAGGACCTCTTCT
CCAGATGTCATTTTAATCCATCTGATTACCATCTGGTCATCCATCAAAAT
AGTAGGAGGACCATACAGTTGTGCNCTGATTACCATCTGGTCATCCATCA
AAATAGTAGGAGGAGCATACAGTTGTGATTTGACAAACAACATACCCATG
TCTTGGACAGCTGTCTGAAACACATCTGTTACGTGTtagttttaatattt
tgttgtCTGAAATCAAACCCTAAACTTTACATTGCTACTCTTTTTCTCCT
CGATAATAATACAGAGCTTTTTCAAGTAAATTTAGTGAATAATTTATAAC
AGTAAGTATTGTTCACTACTAGgctaatataaaaaaaaagaaacaaaaag
ttgTTGGTGGCAGGTTATGTCTCGCCACGAAGGTTTGTATCATTTTTAAT
ATGTATTTTGTAATAGTCAGGTTCGATGATAAGTAGAATCTGTAATAAAA
TCTCGGATTGCTTTTTTAAGAGTGGTTTTCATAATCTTTGATCTTTTTCC
TAGAGCCTTTATTATCAAAGCAAGATTTCCGTTGCTTTGTAACATTCTTT
TTCACTTTGTGACTTCTTTGATGTGATGTGATCTTATGCCTAAAAGGGCG
GTCTTTCCTTCGACTAACAGCTATCATTTTCCTAGTTATGCTGGACAAAG
TTTAAGGTTGTAGATCCAACCCTTCAAGCTTTGTACAAATTTGTGGTCTA
TCCATTCCTAACCTCTTATTTtcctttattatttcattttagGTGTGAGT
TGTGATTCATgtaacaaaggaaattttcgtgGAAAACGATATAaatgttt
gatttgttttgattacGATTTATGTTCGAATTGTCATGATGCTGGGacaa
caacaacacaacacACCTCAAATCATCCAATGCAGTGTATTATAACCAGA
TCTGATTTTGGTAAAACGATTTCCTTGAACTAAATTTTGTCTCTTAGGAT
TGACAtaattgtgattttttgattctAAAGGGACACTTGCACAaaacaat
atttaaaaattgaaagacTTAACAAGCTTCTACAAGATTTTACAGACCAG
GGGGTAAACAATGAGCTACTTACTCATGGCTGGACCCCCCCTGGcctgag
gggggggggctaaaaggtcgagcagcaattggtacctgattttagcctgt
ggctaggggggactaaccatgttaggggtcacctaaattttttcagatgg
acctgcctgggggctagattctatgtttggtgattgaattataagcaacc
taccagaccataggttggcactttctcatcttatattttaatctaagcaa
tgctcaaaagATGACAATTCGGtatctaatatattatctgCAGTGCCGTA
TCAACCGGGGGGGAGGGgcaaggggggctatgcccccaataattttttca
aaaatggttattttgcaaaatgcaaagtttttctttttaatttgtcataa
ttgtcttataagtgcatgttttgattgcattttcaagcaattatagagct
caaattttcaaaattttccccctcaggccaaaccatggttggccctcgcg
gtgtcactaaacttcagccccctaatatgaaaatgcttcctacggcactg
atctgtaaaaattctttaatcctgttgcatttacttagataaaaaaatcT
GTCCGGCAAGGGATCTGCATGAACCTTCAATACTTAGCTTATCTCTTatt
tcttagggcatttattctatttagcaataacCTAAACTAACTgctgtatt
tgtttgattgtttgaaaaggattttcgacgTGTCATTTGCTTgggggtca
cctaaaatatttggcaaccaggggttacctaaatcttaggggtcacctga
attcttagggggtacctaaaacctgctgccaagccatgttACTATTAACA
CTTGAAACAATGATTTATTTACTTTGGATAATTTACACCACccctaaaaa
gtcaaaaaaaaattctatctaAATTTCTATCTATTCCCAAAATATAATTG
TTTCAatatctttgtttttgtttagaaTTATTTTATGGTGGTGAATCTTT
GCAGTATGACAACCCAGCCTCCTACTCATTTGTTTGTCCTCACTGTGGCA
AACTTGGTTACAGTGAGCTCCAGTTATTGGAACATGTCAATACAGACCAT
AGTTCTGTATCTACTGAAGTGGTAAGTGAGAAAAAACTCATTGCAACTTT
GTTATAAATTCTTTTCTCCATTTCCTTTAATATTTTCAGATATTTGTTGA
TATGACCAATGGATTGTTTTAGAGGGACTGGCTCCCCctaaaaagaacat
tttaacacCTTTATAGAAAGTACATAGAATCAATTTTCCTTGGCAAATAC
ATGGAATCGAATCACTCCATTTTCCTATGGACATACATTGAATGAAATCA
CTTCGTT

Coding sequence (CDS) from alignment at scaffold_369:245770..248226+

>TCONS_00062558 ID=TCONS_00062558|Name=TCONS_00062558|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_369:245770..248226+ (Clytia hemisphaerica)
ATGTCTCGCCACGAAGGTGTGAGTTGTGATTCATgtaacaaaggaaattt
tcgtgGAAAACGATATAaatgtttgatttgttttgattacGATTTATGTT
CGAATTGTCATGATGCTGGGacaacaacaacacaacacACCTCAAATCAT
CCAATGCAGTGTATTATAACCAGATCTGATTTTGaaTTATTTTATGGTGG
TGAATCTTTGCAGTATGACAACCCAGCCTCCTACTCATTTGTTTGTCCTC
ACTGTGGCAAACTTGGTTACAGTGAGCTCCAGTTATTGGAACATGTCAAT
ACAGACCATAGTTCTGTATCTACTGAAGTGGTAAGTGAGAAAAAACTCAT
TGCAACTTTGTTATAAATGTCTCGCCACGAAGGTGTGAGTTGTGATTCAT
gtaacaaaggaaattttcgtgGAAAACGATATAaatgtttgatttgtttt
gattacGATTTATGTTCGAATTGTCATGATGCTGGGacaacaacaacaca
acacACCTCAAATCATCCAATGCAGTGTATTATAACCAGATCTGATTTTG
aaTTATTTTATGGTGGTGAATCTTTGCAGTATGACAACCCAGCCTCCTAC
TCATTTGTTTGTCCTCACTGTGGCAAACTTGGTTACAGTGAGCTCCAGTT
ATTGGAACATGTCAATACAGACCATAGTTCTGTATCTACTGAAGTGGTAA
GTGAGAAAAAACTCATTGCAACTTTGTTATAAATGTCTCGCCACGAAGGT
GTGAGTTGTGATTCATgtaacaaaggaaattttcgtgGAAAACGATATAa
atgtttgatttgttttgattacGATTTATGTTCGAATTGTCATGATGCTG
GGacaacaacaacacaacacACCTCAAATCATCCAATGCAGTGTATTATA
ACCAGATCTGATTTTGaaTTATTTTATGGTGGTGAATCTTTGCAGTATGA
CAACCCAGCCTCCTACTCATTTGTTTGTCCTCACTGTGGCAAACTTGGTT
ACAGTGAGCTCCAGTTATTGGAACATGTCAATACAGACCATAGTTCTGTA
TCTACTGAAGTGGTAAGTGAGAAAAAACTCATTGCAACTTTGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039194XLOC_039194Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062558-proteinTCONS_00062558-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062558-exon-scaffold_369-1491911889:245770..246201TCONS_00062558-exon-scaffold_369-1491911889:245770..246201Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1510915933:245770..246201TCONS_00062558-exon-scaffold_369-1510915933:245770..246201Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1575043694:245770..246201TCONS_00062558-exon-scaffold_369-1575043694:245770..246201Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1491911889:246562..246729TCONS_00062558-exon-scaffold_369-1491911889:246562..246729Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1510915933:246562..246729TCONS_00062558-exon-scaffold_369-1510915933:246562..246729Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1575043694:246562..246729TCONS_00062558-exon-scaffold_369-1575043694:246562..246729Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1491911889:247845..248226TCONS_00062558-exon-scaffold_369-1491911889:247845..248226Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1510915933:247845..248226TCONS_00062558-exon-scaffold_369-1510915933:247845..248226Clytia hemisphaericaexon
TCONS_00062558-exon-scaffold_369-1575043694:247845..248226TCONS_00062558-exon-scaffold_369-1575043694:247845..248226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:245770..248226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5102	9.44352	5.14463	4.32145	15.2877	10.9556	12.1554	13.2579	10.9839	13.5575	10.6948	7.91675	9.73719	8.40039	8.73056	8.25051	13.7127	12.7132	10.7823	10.5171	10.4725	10.9089	15.524	16.5057	10.4959	9.98307	12.9641	9.20141	14.4673	14.4804
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ
IPR008598Di19_Zn_binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00062558 vs. Swiss-Prot (Human)
Match: KCMF1 (E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 9.713e-45
Identity = 67/103 (65.05%), Postives = 88/103 (85.44%), Query Frame = 3 
Query:  417 MSRHEGVSCDSCNKGNFRGKRYKCLICFDYDLCSNCHDAGTTTTQHTSNHPMQCIITRSDFELFYGGESLQYDNPASYSFVCPHCGKLGYSELQLLEHVNTDH 725
            MSRHEGVSCD+C KGNFRG+RYKCLIC+DYDLC++C+++G TTT+HT++HPMQCI+TR DF+L+YGGE+   + P   SF CP+CGK+GY+E  L EHV ++H
Sbjct:    1 MSRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVDFDLYYGGEAFSVEQP--QSFTCPYCGKMGYTETSLQEHVTSEH 101
The following BLAST results are available for this feature:
BLAST of TCONS_00062558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCMF19.713e-4565.05E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens ... [more]
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