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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062623 ID=TCONS_00062623|Name=TCONS_00062623|organism=Clytia hemisphaerica|type=transcript|length=4906bpRun BLAST on NCBI protein sequence of TCONS_00062623-protein >TCONS_00062623-protein ID=TCONS_00062623-protein|Name=TCONS_00062623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp MADGQDGYTWQIAYVYLFNLIVGAGALTMPQAFAQTGWVLGTVAMAVLALRun BLAST on NCBI transcript from alignment at scaffold_370:154657..175108+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062623 ID=TCONS_00062623|Name=TCONS_00062623|organism=Clytia hemisphaerica|type=transcript|length=20452bp|location=Sequence derived from alignment at scaffold_370:154657..175108+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_370:154657..175108+ >TCONS_00062623 ID=TCONS_00062623|Name=TCONS_00062623|organism=Clytia hemisphaerica|type=CDS|length=14310bp|location=Sequence derived from alignment at scaffold_370:154657..175108+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062623 vs. Swiss-Prot (Human)
Match: TM104 (Transmembrane protein 104 OS=Homo sapiens GN=TMEM104 PE=1 SV=2) HSP 1 Score: 359.377 bits (921), Expect = 1.667e-109 Identity = 219/492 (44.51%), Postives = 300/492 (60.98%), Query Frame = 3
Query: 207 EMADGQDGYTWQIAYVYLFNLIVGAGALTMPQAFAQTGWVLGTVAMAVLALMSFCTSTFMIEAMSIGNAMI---RLKNQKQQPNVISRTPDDPDD-SGNELEPAEGSPLLINSDEHSSGDLYGIDKKVEMGDLAEMFFSKAGLIAYYVVIALYLYGDLAIYAAAVPKSMTQAICGGGSKLFENGDLPCGNVSS------------MSVFDMYRITLLIFVVCLCPFVFFNLAKTKFLQIATTIFRWAAFLCMVSLAVNRVVHKKSTHRAVIFEFNALPNFFGVAVYSFMCHHSLPSIITPVTNKRRILYVLFGDFVAVFFFYMLLVTTAVFAFKVDDLKDLYTLSFTDAPDV----LKYFLELFPTFTLSTNFPIIAITLRENLKNLFLKENKYYGLFVRRXXXXXXXXXXXXXXXXXTDDVEMLVSITGTYAGAVIQYVVPVMLVFYGRRSVLAKLGNYI-NKNRSPFRSQGWVYLIVTWYFVCTVFVTVN 1619
E+ + + Y+ + VY+FNLIVG GALTMP+AFA GW++ V + L MSF T+TF+IEAM+ NA + R++N K++ + S T D D + E AE P+L + S + + I +VEMG +A MFF+K G+ +Y I +YLYGDLAIYAAAVP S+ Q C G+ CG + + D YRI L IF + L PF FF++ KTK+LQI T++ RW AF M+ LA+ R+ H + + +F+ + N FGV VYSFMC HSLPS+ITPV++KR + ++F D+V + FY LL TA+F F+ D L D+YTL+F V +++FL LFP FT+STNFPIIA+TLR N K LF +E Y V R +FP ++PP+++AF T D+E LV ITG YAG IQYV+P LV++ RR G + NK+RSPFR WV ++ W F C +FVT N
Sbjct: 4 EITETGELYSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPIL-SVQRRGSPNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSA------TGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFSCFIFVTAN 488 The following BLAST results are available for this feature:
BLAST of TCONS_00062623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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