TCONS_00062915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062915
Unique NameTCONS_00062915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062915 ID=TCONS_00062915|Name=TCONS_00062915|organism=Clytia hemisphaerica|type=transcript|length=1464bp
aacctAACATATACGAGTATACTGTGTGGTTGACAATTACAATACTTTAA
AAAGGAAGCCAGCAACCGCATGAATTTAATAGTCAACACAAGAAGTTTTG
AGATTTGATTGTTCTATTCGTTACCGTTAGAGATGTAGATGATTTTCCAA
TGGAGAAATAAATTAATTCAAGCTTGAGTAGAAAGTAAACagtctaatag
accttttcataaattacgtcacttAACTCGTtctcaaaatattgtgctat
ggTTATTGAACCCAAAAGGTTCATATTCAAGGTTTCAAGGTTCACACTCT
ATTTAAAAAAGGTCAAGGTCTCGAGGGATATAATCAAACCTTGGTAATTG
TTTCAAAACGAGACAGTCGTTGGACTAAAATAAGACCTATTGATATTAGA
ACAAGGCAACTAATCAATGGAAACAACAATGATCATATCGGTGGTAGAAA
TCTTGGAGTTCATCCATAGATAACCAACATTAGTTGATACCAAATATTAA
TGACTTTTAATTTCGAAGTTTGCAAAAATTTGTCAGGTGTTAATTAAAAA
TCTTAAtgtaaataatttaaaataatcTAAAATTATAACATAAAAAAGGA
TGGTATATTAATTATTCTAACTGAACCAAATATCAAGAAATACTTTTAAT
AGCCTCAAACAAAGAATCCGGGTTTGGTTTCTCAGCCACTGCAGAGACGT
TGATTCCAAGTTTTCTGACAGCTTGTGCAGTATACTCCCCTATGCAAGCC
ACTTTCACACTTTCGCCCAATCCACTAATTAATTTTATCAGTGATGACAT
GTGAAATTCCGCACCAGACGGGCTGTAAAAGGTAACAACATCCGGCGTAA
AACCTATTAAATAGTTCTTAAGATTTGTTTCAAATTGTGTATCAGGGATA
GTTTTATAGCATGAGATAGATTCGTTGGGAATTTCTTTCTCCGTCAGTCT
TTTAGGGATAGTCTCACGTGCTAAATTACCACAGAGAAACATCAAaggtt
tttcagtattttcttGTTGCTTGATTACTAGATCTGATAATTCTTTAGCA
TTGCCCGTCTCCGAACCCACTGATTCAAGACCCAATTGTTTTAAACAGTT
CTCAGTGGTACGACCAACAACATACAAAGTGAAATCTGCCATCTGtctta
tcttttcaatatcaCTAGGTTCAACAACCTTCTCAAAGGCAGTTACAGCT
CGACGACTTGTGAAAATCAGACCTGAATATTGGTCTATTGTATCCACAAA
ATCTACAATTTTGTCCAAGTTACAATACTCAAAACCAAGCACTGGGACCG
AGGTCACGTTTCCAATCAGAGAGTCCTGGAAACGAAGATGATATTTATCA
CTTTCTTCTTCCTCTTGGCGAAGAAGCAGTacattcattattttttgttc
tgaaaaacaaaaaggaaaaacagaaaaatgtcATTATATGGCGGATAAAT
CTGAAAGTAAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00062915-protein

>TCONS_00062915-protein ID=TCONS_00062915-protein|Name=TCONS_00062915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MNVLLLRQEEEESDKYHLRFQDSLIGNVTSVPVLGFEYCNLDKIVDFVDT
IDQYSGLIFTSRRAVTAFEKVVEPSDIEKIRQMADFTLYVVGRTTENCLK
QLGLESVGSETGNAKELSDLVIKQQENTEKPLMFLCGNLARETIPKRLTE
KEIPNESISCYKTIPDTQFETNLKNYLIGFTPDVVTFYSPSGAEFHMSSL
IKLISGLGESVKVACIGEYTAQAVRKLGINVSAVAEKPNPDSLFEAIKSI
S
Run BLAST on NCBI

transcript from alignment at scaffold_373:103484..104947

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062915 ID=TCONS_00062915|Name=TCONS_00062915|organism=Clytia hemisphaerica|type=transcript|length=1464bp|location=Sequence derived from alignment at scaffold_373:103484..104947 (Clytia hemisphaerica)
TTTCTTACTTTCAGATTTATCCGCCATATAATgacatttttctgtttttc
ctttttgtttttcagaacaaaaaataatgaatgtACTGCTTCTTCGCCAA
GAGGAAGAAGAAAGTGATAAATATCATCTTCGTTTCCAGGACTCTCTGAT
TGGAAACGTGACCTCGGTCCCAGTGCTTGGTTTTGAGTATTGTAACTTGG
ACAAAATTGTAGATTTTGTGGATACAATAGACCAATATTCAGGTCTGATT
TTCACAAGTCGTCGAGCTGTAACTGCCTTTGAGAAGGTTGTTGAACCTAG
tgatattgaaaagataagaCAGATGGCAGATTTCACTTTGTATGTTGTTG
GTCGTACCACTGAGAACTGTTTAAAACAATTGGGTCTTGAATCAGTGGGT
TCGGAGACGGGCAATGCTAAAGAATTATCAGATCTAGTAATCAAGCAACa
agaaaatactgaaaaacctTTGATGTTTCTCTGTGGTAATTTAGCACGTG
AGACTATCCCTAAAAGACTGACGGAGAAAGAAATTCCCAACGAATCTATC
TCATGCTATAAAACTATCCCTGATACACAATTTGAAACAAATCTTAAGAA
CTATTTAATAGGTTTTACGCCGGATGTTGTTACCTTTTACAGCCCGTCTG
GTGCGGAATTTCACATGTCATCACTGATAAAATTAATTAGTGGATTGGGC
GAAAGTGTGAAAGTGGCTTGCATAGGGGAGTATACTGCACAAGCTGTCAG
AAAACTTGGAATCAACGTCTCTGCAGTGGCTGAGAAACCAAACCCGGATT
CTTTGTTTGAGGCTATTAAAAGTATTTCTTGATATTTGGTTCAGTTAGAA
TAATTAATATACCATCCTTTTTTATGTTATAATTTTAgattattttaaat
tatttacaTTAAGATTTTTAATTAACACCTGACAAATTTTTGCAAACTTC
GAAATTAAAAGTCATTAATATTTGGTATCAACTAATGTTGGTTATCTATG
GATGAACTCCAAGATTTCTACCACCGATATGATCATTGTTGTTTCCATTG
ATTAGTTGCCTTGTTCTAATATCAATAGGTCTTATTTTAGTCCAACGACT
GTCTCGTTTTGAAACAATTACCAAGGTTTGATTATATCCCTCGAGACCTT
GACCTTTTTTAAATAGAGTGTGAACCTTGAAACCTTGAATATGAACCTTT
TGGGTTCAATAAccatagcacaatattttgagaACGAGTTaagtgacgta
atttatgaaaaggtctattagactGTTTACTTTCTACTCAAGCTTGAATT
AATTTATTTCTCCATTGGAAAATCATCTACATCTCTAACGGTAACGAATA
GAACAATCAAATCTCAAAACTTCTTGTGTTGACTATTAAATTCATGCGGT
TGCTGGCTTCCTTTTTAAAGTATTGTAATTGTCAACCACACAGTATACTC
GTATATGTTaggtt

Coding sequence (CDS) from alignment at scaffold_373:103484..104947

>TCONS_00062915 ID=TCONS_00062915|Name=TCONS_00062915|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_373:103484..104947 (Clytia hemisphaerica)
atgaatgtACTGCTTCTTCGCCAAGAGGAAGAAGAAAGTGATAAATATCA
TCTTCGTTTCCAGGACTCTCTGATTGGAAACGTGACCTCGGTCCCAGTGC
TTGGTTTTGAGTATTGTAACTTGGACAAAATTGTAGATTTTGTGGATACA
ATAGACCAATATTCAGGTCTGATTTTCACAAGTCGTCGAGCTGTAACTGC
CTTTGAGAAGGTTGTTGAACCTAGtgatattgaaaagataagaCAGATGG
CAGATTTCACTTTGTATGTTGTTGGTCGTACCACTGAGAACTGTTTAAAA
CAATTGGGTCTTGAATCAGTGGGTTCGGAGACGGGCAATGCTAAAGAATT
ATCAGATCTAGTAATCAAGCAACaagaaaatactgaaaaacctTTGATGT
TTCTCTGTGGTAATTTAGCACGTGAGACTATCCCTAAAAGACTGACGGAG
AAAGAAATTCCCAACGAATCTATCTCATGCTATAAAACTATCCCTGATAC
ACAATTTGAAACAAATCTTAAGAACTATTTAATAGGTTTTACGCCGGATG
TTGTTACCTTTTACAGCCCGTCTGGTGCGGAATTTCACATGTCATCACTG
ATAAAATTAATTAGTGGATTGGGCGAAAGTGTGAAAGTGGCTTGCATAGG
GGAGTATACTGCACAAGCTGTCAGAAAACTTGGAATCAACGTCTCTGCAG
TGGCTGAGAAACCAAACCCGGATTCTTTGTTTGAGGCTATTAAAAGTATT
TCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039405XLOC_039405Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062915-proteinTCONS_00062915-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062915-exon-scaffold_373-1491911889:103484..104947TCONS_00062915-exon-scaffold_373-1491911889:103484..104947Clytia hemisphaericaexon
TCONS_00062915-exon-scaffold_373-1510915933:103484..104947TCONS_00062915-exon-scaffold_373-1510915933:103484..104947Clytia hemisphaericaexon
TCONS_00062915-exon-scaffold_373-1575043694:103484..104947TCONS_00062915-exon-scaffold_373-1575043694:103484..104947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:103484..104947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.1278	25.4718	8.83414	6.07503	7.73886	5.96473	6.61468	7.00919	4.12118	5.16376	4.55382	1.76975	4.155	4.52978	5.98745	5.77085	7.91563	6.22089	2.10355	3.39616	3.41652	2.71966	23.0131	20.0382	4.06707	5.01124	7.09355	6.24664	13.9312	14.6732
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0037544pyrrol_synth_uPrphyn_synth
Vocabulary: Molecular Function
TermDefinition
GO:0004852uroporphyrinogen-III synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0033014tetrapyrrole biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033014 tetrapyrrole biosynthetic process
molecular_function GO:0004852 uroporphyrinogen-III synthase activity
Blast
[Close]
BLAST of TCONS_00062915 vs. Swiss-Prot (Human)
Match: HEM4 (Uroporphyrinogen-III synthase OS=Homo sapiens GN=UROS PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.190e-36
Identity = 89/259 (34.36%), Postives = 142/259 (54.83%), Query Frame = -2 
Query:  645 MNVLLLRQEEEE---SDKYHLRFQDSLIG-NVTSVPVLGFEYCNLDKIVDFVDTIDQYSGLIFTSRRAVTAFEKVVEPSDIEKIRQMA------DFTLYVVGRTTENCLKQLGLESVGSETGNAKELSDLVIKQQENTEKPLMFLCGNLARETIPKRLTEKEIPNESISCYKTIPDTQFETNLKNYLI-GFTPDVVTFYSPSGAEFHMSSLIKLISGLGESVKVACIGEYTAQAVRKLGINVSAVAEKPNPDSLFEAIK 1388
            M VLLL+  +E+    D Y       L G   T +PVL FE+ +L    + +   + Y GLIFTS RAV A E  +E ++  ++ + +        ++YVVG  T + + ++GL++ G   GNA++L++ +   +E++  PL+F CGNL RE +PK L +K I  ESI+ Y+T+     + NL +Y      P  +TF+SPSG  + +  + +L     + +K A IG  TA+A+   G+ VS  AE P P +L   I+
Sbjct:    1 MKVLLLKDAKEDDCGQDPYIREL--GLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNAEKLAEYIC-SRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIR 256
The following BLAST results are available for this feature:
BLAST of TCONS_00062915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HEM42.190e-3634.36Uroporphyrinogen-III synthase OS=Homo sapiens GN=U... [more]
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