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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062959 ID=TCONS_00062959|Name=TCONS_00062959|organism=Clytia hemisphaerica|type=transcript|length=2524bpRun BLAST on NCBI protein sequence of TCONS_00062959-protein >TCONS_00062959-protein ID=TCONS_00062959-protein|Name=TCONS_00062959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp MAEVKFSAANDAAEVKLESKNKNGGEMNLEEDDNKQPERRQWGNKFEFLLRun BLAST on NCBI transcript from alignment at scaffold_375:167171..189674+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062959 ID=TCONS_00062959|Name=TCONS_00062959|organism=Clytia hemisphaerica|type=transcript|length=22504bp|location=Sequence derived from alignment at scaffold_375:167171..189674+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_375:167171..189674+ >TCONS_00062959 ID=TCONS_00062959|Name=TCONS_00062959|organism=Clytia hemisphaerica|type=CDS|length=17820bp|location=Sequence derived from alignment at scaffold_375:167171..189674+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062959 vs. Swiss-Prot (Human)
Match: S6A17 (Sodium-dependent neutral amino acid transporter SLC6A17 OS=Homo sapiens GN=SLC6A17 PE=1 SV=3) HSP 1 Score: 443.736 bits (1140), Expect = 6.205e-143 Identity = 227/628 (36.15%), Postives = 363/628 (57.80%), Query Frame = 3
Query: 519 RTNNFKHSKRGMAEV-KFSAANDAAEVKLESKNKNGGEMNLEEDDNKQPERRQWGNKFEFLLSCIGYAVGLGNIWRFPWLAKKNGGGAFLIPYFTMLILEGIPVFYLEMNIGQRFRLGPGPVWQKISPWAGGVGLCTLAASFLSGCFYRMPFGWIIYYFFTSMQNPLPWSSCPQVSDGNSTMVDLPKCKKIGSTEYYWYYTALQISSSIEDNTGLSWQLVLSLFGCYTIITACMIKGIESAGKVVYFTALFPYVCLLIFLIQGLTLEGYEEGLYYLFRPEWDRLKDPIVWKDAAAQIFFSLSLGFGGIIAYASYNDEKNDTLKDTLIICFVNCFTSIFAGCAIFSILGYRATTKSKNCILENL------LNSS-----------NMWHNCSVDYF---------------------------LDQTSGGSGLAFVAFTEAIDLLPGSIFFAILFFLMLVTLGLDSAFGSLEGVLTSVIDMKIFPKLRDEWKMVTIALIMFIPGIAFCTSIGEYLIQLFSDFGIDFPIIIVAFAELMFVSYAYGLDKFGEDIEHMTGRNISLFFKICWKYVSPALIAIVLGFTFYGMVSKPPQYTAWDTEQALSVKKDYPGWALFVGVTCTLLTFICIP 2267
R ++ +H +A++ D + L + GG+ E++ +R W +K +++L+ IG++VGLGNIWRFP+L +KNGGGA+L+PY +LI+ GIP+F+LE+ +GQR R G VW I P GG+G + G +Y + GW I+YFF S Q PLPWS CP V +G+ +V+ +C+K +T Y+WY AL IS SI ++ GL+W++ L L ++I+ ++KGI+S+GKV+YF++LFPYV L FL++GL L G +G+ ++F P+ D++ DP VW++AA Q+FF+L LGFGG+IA++SYN + N+ D ++ F+N FTS+ A +F++LG++A ++ C++EN LN++ N H + DY LD++ G+GLAF+AFTEA+ P S F++++FFLML+ LGL S G++ G+ T +ID PK E V + F+ G+ F G Y + +F D+ P+ ++ E + V++ YG KF +++ M G F+ WK+VSP +A++ + + PP Y+AW E+A +P WA+ + +T ++ + IP
Sbjct: 10 REHSSEHVTESVADLLALEEPVDYKQSVLNVAGEAGGKQKAVEEELDAEDRPAWNSKLQYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWHYICPRLGGIGFSSCIVCLFVGLYYNVIIGWSIFYFFKSFQYPLPWSECPVVRNGSVAVVE-AECEKSSATTYFWYREALDISDSISESGGLNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLVVFAVLGFKANIMNEKCVVENAEKILGYLNTNVLSRDLIPPHVNFSHLTTKDYMEMYNVIMTVKEDQFSALGLDPCLLEDELDKSVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAGITTPIIDTFKVPK---EMFTVGCCVFAFLVGLLFVQRSGNYFVTMFDDYSATLPLTLIVILENIAVAWIYGTKKFMQELTEMLGFRPYRFYFYMWKFVSPLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALLITLIVVATLPIP 633 The following BLAST results are available for this feature:
BLAST of TCONS_00062959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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