TCONS_00062982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062982
Unique NameTCONS_00062982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062982 ID=TCONS_00062982|Name=TCONS_00062982|organism=Clytia hemisphaerica|type=transcript|length=1570bp
tagaATTGAAAAGGAAATTTATCGAAACtttgttgtaacttttttttgtt
gataaaaaTGGCCACCAATGGATACTCACTACAGACGAAAACACGTCGAA
ATTCTGGCCCTGCAGTTTTAGTCTCTTTGAAATTCAAGCAAACAGCGAAA
GCGAAGAATTTAGGTTTACCTCCTCTTGTGAGTTTGAACGGTTTTTTGCA
AGAAGGAACTTCTTCATCTGCACAAACAGATGAAAAGTTGGTTATAAAGG
AGAAACCAGCGATCGACGAAGATGAATGGAAACGAAGAGTGAATGAAGAT
CTGGTTGAGAGCTTTTCCATTTTCGACATTGATGGTGATGGGGAGATTTC
CATCTCAGAATTGATGTCAGTGATGGCTTCCGTTGGAAATGACATCTCAG
CCGAAGATGCTGAAGATATCTTTGATGTCGTCGATTCTAACGGTGACGGT
AAAATAAGTTTTGATGAATTCAAAGAATGTATGTATGAGAAGATGTCTCA
ACAAACGGTGGACGAAGACCTCATCGGAGCCTTCGAAATCTTTGATGAAG
ACAAAGATGGTTACATTTCGCCAACAGAAATACAACTGTTATTCAAGAAA
CTCGGTGAATTGATCTCCACTGATGAAGCTGTTGAAATTATGAAAGATTG
CGATCTCAACAAGGATGGTCTAATCGATTTCGAAGAATTCAAGGCATTCT
ACTTGAAGATTTTCGAGAACCAACCAACTCTCGCTGAACAACTGGTTGCT
GAAGCGGAAGCAGATGAAAAGCAAAAAGTCGCTCTTGCAATGGAAGAAAA
AGAAGCGAGTGGATATCCTCAAGGTGAAGCACCCTCACCCACAGATTACA
AATGATGATGTGGTGATAGAGAGTTTACTCCTTTGTTGGTTCCGCGTGGT
GCTGTTGTGCGCATGCGCGAGGTTGGTCGGATTTGAAGAAGTTCGGCGTG
ACATCATTTCATTGCGGATTTGATCAAACGGCCCTCATCTGCGGTATACT
AACGGAAAGTTACAGGCCCGTTGAGTGATAAAGTGTCGGAAGAACGAACG
ATCTTCTCCCATAACCGGCCCTCGTGATCGAATTCGAAACCAGATTTAAT
TTGTTGGGAAAATGTGATACGAACACAACAGAAAATTTGCTAAGATTTGA
TTTACCGAAATTTCATGATTTAATGACTTGTTATAtaggttattttttca
taggACTTCTTAAGTAGATAGCAGTGCTAGGACAATTTGTTATTTTGATA
ACTAATCTTGCATCATAGCTGAAAGCCCCCTGATTTATTAATGGGAGcga
tgaaatttattttgattttgaatttcaCCATTCCCAGGCCGAAATAGTAA
CCTTCAGTATTAACTGCAATCTTTATCTGATTTAGATCGGTTACTAATCA
TAAGCTTGAAATGCTTATAGCGCTCGCTGTTTCGGCTTATTTGTTATCGA
TGGATAAGCTTTCTCATATATAGTTATTCATCTTGAACTTAAAATTGTGT
ATATTTTTGTATGAATATTATTtgcatattttgaaaatatgatccttttt
tctaaaaaaagaaaattttg
Run BLAST on NCBI

transcript from alignment at scaffold_375:303611..307483-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062982 ID=TCONS_00062982|Name=TCONS_00062982|organism=Clytia hemisphaerica|type=transcript|length=3873bp|location=Sequence derived from alignment at scaffold_375:303611..307483- (Clytia hemisphaerica)
TAGAATTGAAAAGGAAATTTATCGAAACTTTGTTGTAACTTTTTTTTGTT
GATAAAAATGGCCACCAATGGATACTCACTACAGACGAAAACACGTCGAA
ATTCTGGCCCTGCAGTTTTAGTCTCTTTGAAATTCAAGCAAACAGCGAAA
GCGAAGAATTTAGGTTTACCTCCTCTTGTGAGTTTGAACGGTTTTTTGCA
AGAAGGAACTTCTTCATCTGCACAAACAGATGAAAAGTTGGTTATAAAGG
TAATGGTTTGCTTATTCGTTTGAATCATGGTTGCGCAGTGTGAACAAAAT
TCTGATTGTCTCAGCAATAATTTTTCAGTTTTAGATCGATTAAGTCAAGA
AAATTATACAGTAGCGCAAGACTCTGCAAGAAAGGCAATGTGTTTGCTCT
GTTATCTTTCCCGAGAAAAAGTAGCTTCAAAGCTTTTACCGTTTCTACTG
TCATTCTTTCCAAAAATTCTTTTTTCCACCTTGCTTTTTTATGATACTGC
TGACCTGAGATTTTCGGCAGTAATTGATCGATTTGCTTTCTTTATAAGAA
GCAAGTGAAATTTTTAACGTTTTTATTTTCCAGCACTTTAACGTCTTTGC
TCTCTCGTCAGATCTTAAATTTGTGTGTTATTATCATAGTATTCCATTTT
CTTTACAAACTAACAAACTAGGCTCAAAAACGCCAACAAATGAGAGAAAA
AATAAGCTGAGCCTGGAATGGCTGAGCAAATAAACTAGGCTTAAAGAGCT
GAAAAATAGGAACAGACGAGCCTCAATAAGAATTTCATGTTCTTATAAAA
AAGAGTGTATCTGCATTAAAATATCAGTCCATTCCCTCTGATTTTTTGGC
ATTTTTGCTTCCTTCTTCGTTATGAAATTACTCCAATAAAAAAGACTACA
AATGTTCTTATCCTTTGATACGTGCCTGAATCACTGAAAAAAGGGGGACA
ATTTGTTTGAAAGTAGTATGTTGGTGTCAGAACCTTTAGCAACAATGGCA
TCCTTTTCTATGTGTTAGCATGACGTCATCATGTCATTGTTTATGCACAG
CTTGNGTATGTTGGTGTCAGAACTTTTAGCAACAATGGCATCCTTTTCTA
TGTGTTAGCATGACGTCATCATGTCATTGTTTATGCACAGCTTGAAATGT
TACGAGTTATTTCTGCGTGGGAATATTGTGGGATGACTATTTATACCCTC
TGTTTAATAAAGATTCCGTTATGTTTATGAAGTGGAAGAAATTTTAAAAC
TTTTCGACATTGAACGTTTATAAAGTCAAGACCGCATCCTCGTCGTTTTC
CTTCAGCCCCTAATTTGCTGGAATTTTCATTTGCCTTGATTTTAGTAAGT
CGAAAATAGTAAACAATTTAAGTGAAAATTACCAACGAATATTAGGACCT
TCTTCAAAAATAGTTCTCTTTTTTTCACAGGAGAAACCAGCGATCGACGA
AGATGAATGGAAACGAAGAGTGAATGAAGGTAAAGACCCGTTTCATTTGC
AAACCTAACTTCTCATTATTTGCCACAAGTTTTAATTATTCTTGCACTTT
GAGTTCAACTCATATTGTAGATTCCTTTATTCGAAAAGATTTTCGGTACG
TTGTTTTACTTATCGCATTTCTGTGCTTCCAATCAATCCGATTGGTTAAA
TCTCAAAACAATCCAAATCAACCAATCAGGTTTCAAAAAAGTGATTTGAT
TGTCGAGGCGGACTTTTGGATGATTGATCGTAAGTACGGTACTTTTCCAA
TCAGTACGGTACTTTTCCAATCCCTTAAAAACATTTTAATTTGTTGTGAT
CTACTTTGGTCTAATTTTCTTAAATATTACATTTTCAAGGCTCTACAAAG
CCTATGAATTCTCATCATGAATTTTTGGCTTTCTGTGCTCATCATTAAAA
ATGCTGATTTTTCTTCTGCAGATCTGGTTGAGAGCTTTTCCATTTTCGAC
ATTGATGGTGATGGGGAGATTTCCATCTCAGAATTGATGTCAGTGATGGC
TTCCGTTGGAAATGACATCTCAGCCGAAGATGCTGAAGATATCTTTGATG
TCGTCGATTCTAACGGTACGGTTATGATCAAGTTTATTTTTTAGAATAAC
ACCTTGTCACAACATTATTGAGAACCGGTTTATTTGTGTACAGCTCAAGG
TGCAATAGAACTCTTAATTCCAGCCGCGAAAGGTGCGGGCAATTTTCCAT
CTTTTAGTATCTAGCTCTTTAACATTTTCCTCAACTATTTAAGATTCCTA
TCAAACTAATCGGTCAGATTATTTTCAAGTAGATATTAAAAAAAGACTCA
ATTCATGCCATATCTATTCCCAAATCTATTTATTTCTGGGATTTAACGAC
GGTTTCCTTCTTTTTCAGGTGACGGTAAAATAAGTTTTGATGAATTCAAA
GAATGTATGTATGAGAAGATGTCTCAACAAACGGTGGACGAAGACCTCAT
CGGAGCCTTCGAAATCTTTGATGAAGACAAAGATGGTTACATTTCGCCAA
CAGAAATACAACTGTTATTCAAGAAACTCGGTGAATTGATCTCCACTGAT
GAAGCTGTTGAAATTATGAAAGATTGCGATCTCAACAAGGATGGTCTAAT
CGATTTCGAAGGTATATCTTATCTAATACCTAAATCTTGGTTGAAATCTC
CTAGTAATGAGAGGTATGCTGGGTCTTTTAGGTCTCTTGACGATCATCAA
GAAAAATTAATTTACCCCATCCAATATATTATTATCGGGAAATTGTATAG
TCCAATATCCTTGGAGTTTTACTGCTAACGACTTGGCATTTCTACGTTGA
TCAAAATATTCAAATGAAATAAACTTTATTGGTGTGAATATTTCTCTTGC
CTCCGTATTTGAAATTACTTAAAGACTGATGAAGATACGCGGTTATCCGC
ACACTGCCAAACCCTCTCGCCATTTTAGATCGCGAAAATTTGGAAATGAA
ATTTAATTTTAATTTTTTGTTTAATCTTTTCTTTACAGAATTCAAGGCAT
TCTACTTGAAGATTTTCGAGAACCAACCAACTCTCGCTGAACAACTGGTT
GCTGAAGCGGAAGCAGATGAAAAGCAAAAAGTCGCTCTTGCAATGGAAGA
AAAAGAAGCGAGTGGATATCCTCAAGGTGAAGCACCCTCACCCACAGATT
ACAAATGATGATGTGGTGATAGAGAGTTTACTCCTTTGTTGGTTCCGCGT
GGTGCTGTTGTGCGCATGCGCGAGGTTGGTCGGATTTGAAGAAGTTCGGC
GTGACATCATTTCATTGCGGATTTGATCAAACGGCCCTCATCTGCGGTAT
ACTAACGGAAAGTTACAGGCCCGTTGAGTGATAAAGTGTCGGAAGAACGA
ACGATCTTCTCCCATAACCGGCCCTCGTGATCGAATTCGAAACCAGATTT
AATTTGTTGGGAAAATGTGATACGAACACAACAGAAAATTTGCTAAGATT
TGATTTACCGAAATTTCATGATTTAATGACTTGTTATATAGGTTATTTTT
TCATAGGACTTCTTAAGTAGATAGCAGTGCTAGGACAATTTGTTATTTTG
ATAACTAATCTTGCATCATAGCTGAAAGCCCCCTGATTTATTAATGGGAG
CGATGAAATTTATTTTGATTTTGAATTTCACCATTCCCAGGCCGAAATAG
TAACCTTCAGTATTAACTGCAATCTTTATCTGATTTAGATCGGTTACTAA
TCATAAGCTTGAAATGCTTATAGCGCTCGCTGTTTCGGCTTATTTGTTAT
CGATGGATAAGCTTTCTCATATATAGTTATTCATCTTGAACTTAAAATTG
TGTATATTTTTGTATGAATATTATTTGCATATTTTGAAAATATGATCCTT
TTTTCTAAAAAAAGAAAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039445XLOC_039445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062982-exon-scaffold_375-1575043694:307235..307483TCONS_00062982-exon-scaffold_375-1575043694:307235..307483Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1575043694:306005..306053TCONS_00062982-exon-scaffold_375-1575043694:306005..306053Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1575043694:305419..305562TCONS_00062982-exon-scaffold_375-1575043694:305419..305562Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1575043694:304873..305115TCONS_00062982-exon-scaffold_375-1575043694:304873..305115Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1575043694:303611..304495TCONS_00062982-exon-scaffold_375-1575043694:303611..304495Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1510915933:307235..307483TCONS_00062982-exon-scaffold_375-1510915933:307235..307483Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1510915933:306005..306053TCONS_00062982-exon-scaffold_375-1510915933:306005..306053Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1510915933:305419..305562TCONS_00062982-exon-scaffold_375-1510915933:305419..305562Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1510915933:304873..305115TCONS_00062982-exon-scaffold_375-1510915933:304873..305115Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1510915933:303611..304495TCONS_00062982-exon-scaffold_375-1510915933:303611..304495Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1491911889:307235..307483TCONS_00062982-exon-scaffold_375-1491911889:307235..307483Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1491911889:306005..306053TCONS_00062982-exon-scaffold_375-1491911889:306005..306053Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1491911889:305419..305562TCONS_00062982-exon-scaffold_375-1491911889:305419..305562Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1491911889:304873..305115TCONS_00062982-exon-scaffold_375-1491911889:304873..305115Clytia hemisphaericaexon
TCONS_00062982-exon-scaffold_375-1491911889:303611..304495TCONS_00062982-exon-scaffold_375-1491911889:303611..304495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:303611..307483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.382052	0	0.305322	0.166597	0	0	0	0	0	1.1699	0	0.288993	1.90854	1.76143	0.253976	0.221629	1.97606	2.33907	9.60551	12.7809	4.82766	3.48712	0.938327	4.17629	1.81318	3.17906	0	0	29.6591	15.3867
Blast
[Close]
BLAST of TCONS_00062982 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.775e-25
Identity = 50/128 (39.06%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:  307 ESFSIFDIDGDGEISISELMSVMASVGNDISAEDAEDIFDVVDSNGDGKISFDEFKECMYEKMSQQTVDEDLIGAFEIFDEDKDGYISPTEIQLLFKKLGELISTDEAVEIMKDCDLNKDGLIDFEEF 690
            E+FS+FD DGDG I+  EL +VM S+G + +  + +D+ + VD++G+G I F EF   M  KM     +E++  AF +FD+D +GYIS  E++ +   LGE ++ +E  E++++ D++ DG +++EEF
Sbjct:   15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
The following BLAST results are available for this feature:
BLAST of TCONS_00062982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM34.775e-2539.06Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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