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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063021 ID=TCONS_00063021|Name=TCONS_00063021|organism=Clytia hemisphaerica|type=transcript|length=2094bpRun BLAST on NCBI protein sequence of TCONS_00063021-protein >TCONS_00063021-protein ID=TCONS_00063021-protein|Name=TCONS_00063021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp MQVWEGCGNGSISFDSSDIGSPYISHIVENNAIIESCGEQAKECKSVEMMRun BLAST on NCBI transcript from alignment at scaffold_376:66481..81139- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063021 ID=TCONS_00063021|Name=TCONS_00063021|organism=Clytia hemisphaerica|type=transcript|length=14659bp|location=Sequence derived from alignment at scaffold_376:66481..81139- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_376:66481..81139- >TCONS_00063021 ID=TCONS_00063021|Name=TCONS_00063021|organism=Clytia hemisphaerica|type=CDS|length=7518bp|location=Sequence derived from alignment at scaffold_376:66481..81139- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063021 vs. Swiss-Prot (Human)
Match: COQ6 (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial OS=Homo sapiens GN=COQ6 PE=1 SV=2) HSP 1 Score: 303.908 bits (777), Expect = 2.113e-94 Identity = 164/420 (39.05%), Postives = 249/420 (59.29%), Query Frame = 3
Query: 807 LGKLESFNDKKVILLETSKEAEKHDWSQKPYENRVSAITPGSGSFLRDIDVWDRVTRKRCNAFNSMQVWEGCGNXXXXXXXXXXXXPYISHIVENNAIIESCGEQAKECKS-VEMMYQTRLINYTAP---DSSASEKLVTLEASNGEKIATKLLVAADGFNSFIRTNSGIKTIDYDYGQSAVVATIKVKTPLPNKTAWQRYLTNGPVALLPLSDEWSSLVWSTSKDKAKELMQLSDSEFIENLNEAFTKPNNSLIPVNALSDFMKNVMSTIQPGKYASNVSHKVPMPIDILPQSRGMFPLGMKHSTYYVKSRIALIGDSAHRIHPMAGQGVNLGFGDVKSLVENIDNSCRLGRDFGALENLLPYETERQRHVLSIIGAINGLNMLFSTDAFPVVFARTLGLTMTDSVSNIKVNIFLYLCK 2054
LG F+DKK++LLE + S+ Y NRVS+I+PGS + L WD + R AF MQVW+ C I FD ++ + +IVEN+ I+ + +Q + V ++Y+++ I YT P + S V + +G TKLL+ ADG NS +R GI+ + ++Y QSAVVAT+ + N AWQR+L +GP+ALLPLSD SSLVWSTS + A EL+ + + +F++ +N AF + ++ ++ +S ++P K ++ P + +SR +FPLG+ H+ YV+ R+ALIGD+AHR+HP+AGQGVN+GFGD+ SL ++ + G+D G++ +L YETERQRH +++ A + L L+ST A P+V RT GL T++VS +K I + K
Sbjct: 54 LGYDIHFHDKKILLLEAGPKKVLEKLSET-YSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFDKDNLDD--MGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAFWSDADHTDFIDTAGAMLQYAVSLLKPTKVSAR--QLPPSVARVDAKSRVLFPLGLGHAAEYVRPRVALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFASK 468 The following BLAST results are available for this feature:
BLAST of TCONS_00063021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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