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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063049 ID=TCONS_00063049|Name=TCONS_00063049|organism=Clytia hemisphaerica|type=transcript|length=1895bp AGAAATGAAAGATGGTTTTGGTACAGGCTTTTTCATAACACAACACACGG AACTTCTCCGACAACAttctaatttcaaaatggcgtTAGCGAGCGGAGGA AAAACCATGTGTGCTGTGACAGAGTTAGAATTTCCCTCACATTTGGATGC AGAAATCAGTACATTGTGTATCAAACAGTTAAATGATGAGAAGATTATTG TTGGACATGAAAACGGTATCTATATCACTTCTATAGGTACAACAGACTCT GTAAATATTGTGAAAAGCTTAGAAGGTTTAGAAGTACCAAGTGTTTTTGT AGATGAAAACTCTGATGGCAATATATTTTATGCTGCTTCTGAAAGTAATG TATATAAATTTGACATTCGATGCCCACTTCAAGATGTTCATTGTTTCAAG GATAACACAGATGAAATTAATTTCATAACAATGAATGATAAAGGATTCTT GGCATCGTGTGATGATTCTGGGGAGTGCAAGATCTTTGATACAAGAAAAG GCACTTTGTATCGCACATTAAGAAAACGACATAAAAATATCTGTAGTAGT GCTGCATTTCTTACGACAAGAGCTGATGATATTGTTACTGGAGGACTTGA TTCACAAATGATTGTTTGGAACCATGCGGTGGTGCGATTTATTCAAGATA TAAACACTCAGGAGATTCTTCAGAAGTTAGGTGATAACTCTGTCAATATG TTTAATCCACCAATGGTCAATGCATTAAGTCTATCACAAGATGGAAGATT GCTAGCCTCTGGCCTTGGGAACGGGTCATTGCAATTGTTTCATGTATTAA AAGGAAAGCGGGCTTTAGCACCATCGCTACTGATCAATCAACATGGGAGT ACTGGAATAACCTCGCTCGATTTCATCAAAACTTCCTACTCTTATATTCT TGCCTCTGGTGGGAACGATATGGAGATAAACTTATGGAGATTGCCTCCAA TTGCTACAAATGCAAAAGGTAAACAATTGATACCAGAGAATGAAATGGCT CTTGAGCAAGACGAAATTATGAAGTAtcaaatttatcaaacaaaactACA AACGAAAATTAATACCCTTGAATCGATGAGATTGAACTCCAGGGATTTCT TGTTAGTGGGTGATCAAACACCTGTTTTAAAAATGATAGATGTTACTGAT CTGCTGGAAATTTGATCGTTGTCTTGGTTTTGTAGAGTCTTTTTGGTTAA AGGTATGTTTTCGATGGTTCGAAGTATGGTTATAACGTGGAAGGGTTAAA TATGCTGATGAATGATTTATGTACATTAAATTTGACGGATAAGTTTCTCt aagaaattttataaaattatctGATGTCCACTTTATAGTGCATACTGGAT ACCATGCcaataatatatttttatttgatataGTTTTATCGGTTATCGGT TGAATGGGATGCTTAGTGCGCTAgagctttaaaatattttgacactCATA CGCTCTTCTTGttcccaaaaaagaaaaaagaagaagccATCTTATcttaa ttgatttttaaataaggttttattttttgttaattaaaaaaaatattatt tttagagTTTGAATTGATATGGGTCAAATTTAGATTTGTAGCCAGTTTTA CCAAAATTGACAGAAAATTAAAAAGAGAGTATTTTCAGCTAGAGCTTGGT CTGAATCTCTGATCCTCCGATTTTCAAGCGCTCTCGAAGCCTTTATTTTT ACAGTATTCAGCTATTCTGCCTACCATCCTTTTAAATTaaggtgttttta tttgaattctAAGCACTATAATCCAACAGTgcctagtctagcaagctaga cgactaatttatacatataaagcaaaaagtaatgaatggaacaattttag tcgtctagaaacctttgtgcactaactccaaacaaaagaaaagtg Run BLAST on NCBI protein sequence of TCONS_00063049-protein >TCONS_00063049-protein ID=TCONS_00063049-protein|Name=TCONS_00063049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
EMKDGFGTGFFITQHTELLRQHSNFKMALASGGKTMCAVTELEFPSHLDA EISTLCIKQLNDEKIIVGHENGIYITSIGTTDSVNIVKSLEGLEVPSVFV DENSDGNIFYAASESNVYKFDIRCPLQDVHCFKDNTDEINFITMNDKGFL ASCDDSGECKIFDTRKGTLYRTLRKRHKNICSSAAFLTTRADDIVTGGLD SQMIVWNHAVVRFIQDINTQEILQKLGDNSVNMFNPPMVNALSLSQDGRL LASGLGNGSLQLFHVLKGKRALAPSLLINQHGSTGITSLDFIKTSYSYIL ASGGNDMEINLWRLPPIATNAKGKQLIPENEMALEQDEIMKYQIYQTKLQ TKINTLESMRLNSRDFLLVGDQTPVLKMIDVTDLLEI Run BLAST on NCBI transcript from alignment at scaffold_378:19668..24221- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063049 ID=TCONS_00063049|Name=TCONS_00063049|organism=Clytia hemisphaerica|type=transcript|length=4554bp|location=Sequence derived from alignment at scaffold_378:19668..24221- (Clytia hemisphaerica) AGAAATGAAAGATGGTTTTGGTACAGGCTTTTTCATAACACAACACACGG
AACTTCTCCGACAACATTCTAATTTCAAAATGGCGTTAGCGAGCGGAGGA
AAAACCATGTGTGCTGTGACAGAGTTAGAATTTCCCTCACATTTGGATGC
AGAAATCAGTACATTGTGTATCAAACAGTTAAATGATGAGAAGATTATTG
TTGGACATGAAAACGGTATCTATATCACTTCTATAGGTACAACAGACTCT
GTAAATATTGTGAAAAGCTTAGAAGGTTTAGAAGTACCAAGTGTTTTTGT
AGATGAAAACTCTGATGGCAATATATTTTATGCTGCTTCTGAAAGTAATG
TATATAAATTTGACATTCGATGCCCACTTCAAGATGTTCATTGTTTCAAG
GATAACACAGATGAAATTAATTTCATAACAATGAATGATAAAGGATTCTT
GGCATCGTGTGATGATTCTGGGGAGTGCAAGATCTTTGATACAAGAAAAG
GCACTTTGTATCGCACATTAAGAAAACGACATAAAAATATCTGTAGTAGT
GCTGCATTTCTTACGACAAGAGCTGATGATATTGTTACTGGAGGACTTGA
TTCACAAATGATTGTTTGGAACCATGCGGTGGTGCGATTTATTCAAGATA
TAAACACTCAGGAGATTCTTCAGAAGTTAGGTGATAACTCTGTCAATATG
TTTAATCCACCAATGGTCAATGCATTAAGTCTATCACAAGATGGAAGATT
GCTAGCCTCTGGCCTTGGTAAGAACATAGCTTTCTAGTCTACTTTGCCTT
TATACCAAAATGTTAGGAGTTGAAAAATATCTCGGTTCAGTCTGTTTTCT
TGATATATTTGAAATCAAAGAAATTTACCTGCGTGAACCAATTTTTATTG
GTGAAAACCGTTTTTATTAGAAAACTGTGAAATTGTGCAAATTCCAAACT
GTATAAACCTGACATTATCTAGTATTTAATCACTAAGGCACGGATTTTTC
ACTTACATCCTTAGGATCCTGAGCATCCTCAGGCTTTTAGAGGATATCCT
CAGGATCCTCTGTTTTGCCTTGGATACAGCTTGATAAAACATCAATATTT
TAATTTCCCAAGGATCCTGAGCTAACTCATGATCCTCATTTTTTATCTCT
TCTTCTCTAAATATGAACCTCAGGATCCTTTGGGTCCTCAGGATATTGCG
AGGATATCCTCAGGATCCTCTAGAATTTATTTTACGTCAATAATTATTTT
TTATTAAAGAAAGAGAATCTTAGGATCCTTAGGATCCTCAGGCTTTCCCA
AGGATATCCTCAGGATCCTCAAAAAAAAATTTGACGTCAATTATTTCCCA
ACTCAATCCTAAGGATCCTAAGGTTCATATTTTGAGAAAAAAAGAAAAAA
AGTGAGGATCCTCAGGTTATCCTCGCAAAAGCCTGAGGACCCTAAGGATC
CTAAGATTCATATTTTGAGAAAAAAAGAAAAAATGTGAGGATCCTCAGGT
TATGCTTGCAAAAGCCTGAGGACCCTAAGGATCCTAAGGTTCATATTTTG
ATAAAAAAGAAATAAAAACGAGGATCCTCAGGATATCCTAGCAAAAGCCT
GAGGACCCTAAGGATCCTAAGGTTCATATTTTGAGAAAATACAAAAAAAG
GTGAGGATATCCTCAGGATATCCTAGCAAAAGCCTGAGGACCCTAAGGAT
CCTAAGGTTCATATTTTGAGAAAATACAAAAAAAGGTGAGGATATCCTCA
GGATCCGGAGGATAAATGTGAAAAATCCGTGCTTAGCTGGGAATGCAAAA
ACTAAACAATTTAAGATATTGTGGGAAAAAAAGAGCAAAACCCCAGACCT
GCCAACTTGAGATGTTCATTTTGCGTGAGATAAAAATTTCAAAGCAGAAT
TCGAATTCATAACCCAGTTTTTCCGGTTTTCCGATATCGGAAATCGGGAA
ATTTTTCCAAAAATTAGAAAATCGAGGAAAATATTTTTCGAAAATTGGAA
TATCGGGGAAATTTTTTTCCAAAAATCCGAAAAACAAGGGAAATTCTTCT
CAAAATTAAAAAATGCGTGAGAAATCAAACTTTTCAAAAATTGCATGAGA
CAGTCTGGAAATGCGTGAGTCTCACTCTCAATGCGTTAGAGTTGGCACCT
CTGCCAGAAAACTAGCAATTTTGGCAGGACATTTACTTGTGATTTAGAAT
TTTTGGGTTCATCTAAAAAGCAGGGTAGCCAATTGGTCTAGGTTGCAGGG
TAGCCATGTATTTCTCAGACCAGAGTAAAAAGATTAAAACTTTTTATATG
ATGATCCTTATTGGAGCCAGGGGGTAAAATTTTGAAAAATTATTATAATT
ACAGTTTTCATTTACACTTTTTTTAAATAAGAGCCACTAAATTTTGAGGA
GGCTTGGCTGTTTTTATTTTTTTGGCACTTGGAGCCTCAAATTGTTCTTA
TCATGTTCTTATTTATTTATAGGGTGTAATTGAGGTATTTTTACTACTTT
GATCCCTTAAATTGCTTGAAATTGAGTAATTTTAGGCTCAGCATCGTTCT
TAAATTGTTCTTATTTTTAATCAATTTTGTTCTTATAAAATTGTTCTTAT
AAAATTAAGTGTAAACTATCCTTAGATGTTATGAGATTACCCATTGTTCT
GTAATTGAGGTATTTTTACTACTTTGACCCCTTAAATTGCTTGAAATTGA
GTAATTTCAGGCTTACCATTGTTCTAAATTCTTATTTTTAATCAATTTTG
TTCTTATAAAATTGTTCTTATAAAATTAAGTGTAAACTATCCTTAGATGT
TATGAGATTACCCATTGTTCTGTAATTGAGGTATTTTTACTACTTTGACC
CCTTAAATTGCTTGAAATTGAGTAATTTCAGGCTTACCATTGTTCTAAAT
TGTTCTTATTTTTAATCAATTTTGTTCTTATAAAATTGTCCTTATAAAAA
AAGTGTATATTATTCTTTGGTGTTATGAGATTACCCATTGTTCTGATTTT
CATTTTAAGTCTTTGTTAGAATGTTGGAATCCATAAATTTTCTGTACTTT
TAACCATAAAAAATATTCTGGCCTGTATTTTTTCAACGTGTGAGAGGAAG
AAAGACAAGATGGTGACTGCACTCAGTAAACAGATGTAGATTTTAAAGTA
TATCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAATTTCTGATA
GTCTGATACAATTGTGGAGATTCTTTTTGCTTGTTTAAGAGAATCAAAAG
CGCTATATTTGAATGTAATTTTGGTTGAAAAATTTGCAATTTTTAGCGAT
TACATTTGCAATTAAGAAAATTGAGCTTTTTTTCTACTTATATGCTATAA
CATTCACTAGTGTAAAAATGATATATTTCCAAATTTGCTTCTTTTAACGA
TTTTTAATTTTTCTTATTTTTCGTAGGGAACGGGTCATTGCAATTGTTTC
ATGTATTAAAAGGAAAGCGGGCTTTAGCACCATCGCTACTGATCAATCAA
CATGGGAGTACTGGAATAACCTCGCTCGATTTCATCAAAACTTCCTACTC
TTATATTCTTGCCTCTGGTGGGAACGATATGGAGATAAACTTATGGAGAT
TGCCTCCAATTGCTACAAATGCAAAAGGTAAACAATTGATACCAGAGAAT
GAAATGGCTCTTGAGCAAGACGAAATTATGAAGTATCAAATTTATCAAAC
AAAACTACAAACGAAAATTAATACCCTTGAATCGATGAGATTGAACTCCA
GGGATTTCTTGTTAGTGGGTGATCAAACACCTGTTTTAAAAATGATAGAT
GTTACTGATCTGCTGGAAATTTGATCGTTGTCTTGGTTTTGTAGAGTCTT
TTTGGTTAAAGGTATGTTTTCGATGGTTCGAAGTATGGTTATAACGTGGA
AGGGTTAAATATGCTGATGAATGATTTATGTACATTAAATTTGACGGATA
AGTTTCTCTAAGAAATTTTATAAAATTATCTGATGTCCACTTTATAGTGC
ATACTGGATACCATGCCAATAATATATTTTTATTTGATATAGTTTTATCG
GTTATCGGTTGAATGGGATGCTTAGTGCGCTAGAGCTTTAAAATATTTTG
ACACTCATACGCTCTTCTTGTTCCCAAAAAAGAAAAAAGAAGAAGCCATC
TTATCTTAATTGATTTTTAAATAAGGTTTTATTTTTTGTTAATTAAAAAA
AATATTATTTTTAGAGTTTGAATTGATATGGGTCAAATTTAGATTTGTAG
CCAGTTTTACCAAAATTGACAGAAAATTAAAAAGAGAGTATTTTCAGCTA
GAGCTTGGTCTGAATCTCTGATCCTCCGATTTTCAAGCGCTCTCGAAGCC
TTTATTTTTACAGTATTCAGCTATTCTGCCTACCATCCTTTTAAATTAAG
GTGTTTTTATTTGAATTCTAAGCACTATAATCCAACAGTGCCTAGTCTAG
CAAGCTAGACGACTAATTTATACATATAAAGCAAAAAGTAATGAATGGAA
CAATTTTAGTCGTCTAGAAACCTTTGTGCACTAACTCCAAACAAAAGAAA
AGTG Coding sequence (CDS) from alignment at scaffold_378:19668..24221- >TCONS_00063049 ID=TCONS_00063049|Name=TCONS_00063049|organism=Clytia hemisphaerica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_378:19668..24221- (Clytia hemisphaerica) GGAACGGGTCATTGCAATTGTTTCATGTATTAAAAGGAAAGCGGGCTTTA GCACCATCGCTACTGATCAATCAACATGGGAGTACTGGAATAACCTCGCT CGATTTCATCAAAACTTCCTACTCTTATATTCTTGCCTCTGGTGGGAACG ATATGGAGATAAACTTATGGAGATTGCCTCCAATTGCTACAAATGCAAAA GGTAAACAATTGATACCAGAGAATGAAATGGCTCTTGAGCAAGACGAAAT TATGAAGTATCAAATTTATCAAACAAAACTACAAACGAAAATTAATACCC TTGAATCGATGAGATTGAACTCCAGGGATTTCTTGTTAGTGGGTGATCAA ACACCTGTTTTAAAAATGATAGATGTTACTGATCTGCTGGAAATTTGAGA AATGAAAGATGGTTTTGGTACAGGCTTTTTCATAACACAACACACGGAAC TTCTCCGACAACATTCTAATTTCAAAATGGCGTTAGCGAGCGGAGGAAAA ACCATGTGTGCTGTGACAGAGTTAGAATTTCCCTCACATTTGGATGCAGA AATCAGTACATTGTGTATCAAACAGTTAAATGATGAGAAGATTATTGTTG GACATGAAAACGGTATCTATATCACTTCTATAGGTACAACAGACTCTGTA AATATTGTGAAAAGCTTAGAAGGTTTAGAAGTACCAAGTGTTTTTGTAGA TGAAAACTCTGATGGCAATATATTTTATGCTGCTTCTGAAAGTAATGTAT ATAAATTTGACATTCGATGCCCACTTCAAGATGTTCATTGTTTCAAGGAT AACACAGATGAAATTAATTTCATAACAATGAATGATAAAGGATTCTTGGC ATCGTGTGATGATTCTGGGGAGTGCAAGATCTTTGATACAAGAAAAGGCA CTTTGTATCGCACATTAAGAAAACGACATAAAAATATCTGTAGTAGTGCT GCATTTCTTACGACAAGAGCTGATGATATTGTTACTGGAGGACTTGATTC ACAAATGATTGTTTGGAACCATGCGGTGGTGCGATTTATTCAAGATATAA ACACTCAGGAGATTCTTCAGAAGTTAGGTGATAACTCTGTCAATATGTTT AATCCACCAATGGTCAATGCATTAAGTCTATCACAAGATGGAAGATTGCT AGCCTCTGGCCTTGGGAACGGGTCATTGCAATTGTTTCATGTATTAAAAG GAAAGCGGGCTTTAGCACCATCGCTACTGATCAATCAACATGGGAGTACT GGAATAACCTCGCTCGATTTCATCAAAACTTCCTACTCTTATATTCTTGC CTCTGGTGGGAACGATATGGAGATAAACTTATGGAGATTGCCTCCAATTG CTACAAATGCAAAAGGTAAACAATTGATACCAGAGAATGAAATGGCTCTT GAGCAAGACGAAATTATGAAGTATCAAATTTATCAAACAAAACTACAAAC GAAAATTAATACCCTTGAATCGATGAGATTGAACTCCAGGGATTTCTTGT TAGTGGGTGATCAAACACCTGTTTTAAAAATGATAGATGTTACTGATCTG CTGGAAATTTGAGAAATGAAAGATGGTTTTGGTACAGGCTTTTTCATAAC ACAACACACGGAACTTCTCCGACAACATTCTAATTTCAAAATGGCGTTAG CGAGCGGAGGAAAAACCATGTGTGCTGTGACAGAGTTAGAATTTCCCTCA CATTTGGATGCAGAAATCAGTACATTGTGTATCAAACAGTTAAATGATGA GAAGATTATTGTTGGACATGAAAACGGTATCTATATCACTTCTATAGGTA CAACAGACTCTGTAAATATTGTGAAAAGCTTAGAAGGTTTAGAAGTACCA AGTGTTTTTGTAGATGAAAACTCTGATGGCAATATATTTTATGCTGCTTC TGAAAGTAATGTATATAAATTTGACATTCGATGCCCACTTCAAGATGTTC ATTGTTTCAAGGATAACACAGATGAAATTAATTTCATAACAATGAATGAT AAAGGATTCTTGGCATCGTGTGATGATTCTGGGGAGTGCAAGATCTTTGA TACAAGAAAAGGCACTTTGTATCGCACATTAAGAAAACGACATAAAAATA TCTGTAGTAGTGCTGCATTTCTTACGACAAGAGCTGATGATATTGTTACT GGAGGACTTGATTCACAAATGATTGTTTGGAACCATGCGGTGGTGCGATT TATTCAAGATATAAACACTCAGGAGATTCTTCAGAAGTTAGGTGATAACT CTGTCAATATGTTTAATCCACCAATGGTCAATGCATTAAGTCTATCACAA GATGGAAGATTGCTAGCCTCTGGCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063049-exon-scaffold_378-1575043694:23455..24221 | TCONS_00063049-exon-scaffold_378-1575043694:23455..24221 | Clytia hemisphaerica | exon |
TCONS_00063049-exon-scaffold_378-1575043694:19668..20795 | TCONS_00063049-exon-scaffold_378-1575043694:19668..20795 | Clytia hemisphaerica | exon |
TCONS_00063049-exon-scaffold_378-1510915933:23455..24221 | TCONS_00063049-exon-scaffold_378-1510915933:23455..24221 | Clytia hemisphaerica | exon |
TCONS_00063049-exon-scaffold_378-1510915933:19668..20795 | TCONS_00063049-exon-scaffold_378-1510915933:19668..20795 | Clytia hemisphaerica | exon |
TCONS_00063049-exon-scaffold_378-1491911889:23455..24221 | TCONS_00063049-exon-scaffold_378-1491911889:23455..24221 | Clytia hemisphaerica | exon |
TCONS_00063049-exon-scaffold_378-1491911889:19668..20795 | TCONS_00063049-exon-scaffold_378-1491911889:19668..20795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_378 | supercontig | scaffold_378:19668..24221 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00063049 vs. Swiss-Prot (Human)
Match: WDR53 (WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.028e-24 Identity = 67/208 (32.21%), Postives = 111/208 (53.37%), Query Frame = 2
Query: 326 FYAASESNVYKFDIRCPLQDVHCFKDNTDEINFITMND-KGFLASCDDSGECKIFDTRKGTLYRTLRKRHKNICSSAAFLTTRADDIVTGGLDSQMIVWNHAVVR--FIQDINTQEILQKLGDNSV-NMFNPPMVNALSLSQDGRLLASGLGNGSLQLFHVLKGKRALAPSLLINQHGSTGITSLDFIKTSYSYILASGGNDMEINLW 937
YA+ + D+R + F N +EIN +++N + LAS DDSG KI D + R+L KRH NICSS AF R +V+ GLD Q+++W+ R +I ++ E + G S + NP + +++S++ G + + G +G +++F V+ K L H ++G++ + F+ SY+L +GGND +I LW
Sbjct: 67 LYASHGETISVLDVRSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSL-KRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVK--CEQELGFKGH-TSGVSQVCFLPE--SYLLLTGGNDGKITLW 268
The following BLAST results are available for this feature:
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