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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063105 ID=TCONS_00063105|Name=TCONS_00063105|organism=Clytia hemisphaerica|type=transcript|length=2841bpRun BLAST on NCBI protein sequence of TCONS_00063105-protein >TCONS_00063105-protein ID=TCONS_00063105-protein|Name=TCONS_00063105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp MNLAANGSDPSGELLFVNFNQDRTSLAVGSRLGYKLFSLANIERLEEIHDRun BLAST on NCBI transcript from alignment at scaffold_38:137270..199170- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063105 ID=TCONS_00063105|Name=TCONS_00063105|organism=Clytia hemisphaerica|type=transcript|length=61901bp|location=Sequence derived from alignment at scaffold_38:137270..199170- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_38:137270..199170- >TCONS_00063105 ID=TCONS_00063105|Name=TCONS_00063105|organism=Clytia hemisphaerica|type=CDS|length=18396bp|location=Sequence derived from alignment at scaffold_38:137270..199170- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063105 vs. Swiss-Prot (Human)
Match: WIPI2 (WD repeat domain phosphoinositide-interacting protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1) HSP 1 Score: 446.432 bits (1147), Expect = 1.681e-146 Identity = 271/472 (57.42%), Postives = 330/472 (69.92%), Query Frame = 1
Query: 250 MNLAA-NGSDPSGELLFVNFNQDRT------------------SLAVGSRLGYKLFSLANIERLEEIHD-YDKGDVCIVERXXXXXXXXXXXXXXPRKLKVCHFKKGTEICNYSYPNTIXXXXXXXXXXXXXXEESLYIHNIRDMKVLHTIRDTPPNLAGLCALSDNSDNCYIAYPGNNQIGEVQIFDGINLRAVTMIAAHDAPVXXXXXXXXXXXXXXXSEKGTVIRVFSIPEGVKLFEFRRGMKRCAQINSLSFSQDLMYLACSSNTETIHVFKLEAETDKEKSPSSNKEEQKDQSWMGYFGKALMTPASYLPSQMTEVFSQGRAFAIAKLPNAGPRNTCTLATINKLPRILVASADGYLYIYNVDPAEGQECTLLRQFPL----------IPNDDDSIPSNADGQGFSAGLAVSDQQRNTPSPQSASSPIRTPQTPDHFPTSSS-----EQNLRLSDDGEYPPLTVRNE 1560
MNLA+ +G +G+LLF NFNQD T SLAVGS+ GYK FSL+++++LE+I++ D DVCIVERLFSSSLVA+VSL +PRKLKVCHFKKGTEICNYSY NTIL+V+LNR RL+V LEESLYIHNIRDMKVLHTIR+TPPN AGLCALS N+DNCY+AYPG+ IGEVQ+FD INLRA MI AHD+P+AAL F+ + T LATASEKGTVIRVFSIPEG KLFEFRRG+KRC I SL+FS D M+L+ SSNTET+H+FKL ET KEK P ++ +W GYFGK LM SYLPSQ+TE+F+QGRAFA +LP G +N C+LATI K+PR+LV +ADGYLY+YN+DP EG EC L++Q L + + P G +AG + T P SSP R T D + LRL +D E+PP+ +R +
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTEVKGASRAAGLGRRAVVWSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKL--ETVKEKPP------EEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGSLETTNEILDSASHDCPLVTQTYGAAAG-------KGTYVP---SSPTRLAYTDDLGAVGGACLEDEASALRLDEDSEHPPMILRTD 454 The following BLAST results are available for this feature:
BLAST of TCONS_00063105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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