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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063203 ID=TCONS_00063203|Name=TCONS_00063203|organism=Clytia hemisphaerica|type=transcript|length=4217bpRun BLAST on NCBI protein sequence of TCONS_00063203-protein >TCONS_00063203-protein ID=TCONS_00063203-protein|Name=TCONS_00063203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp MSNANRYNVNDASEPPTTLNPINTRITKNKSFAISADASNSAPAILTAHNRun BLAST on NCBI transcript from alignment at scaffold_384:11564..28306- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063203 ID=TCONS_00063203|Name=TCONS_00063203|organism=Clytia hemisphaerica|type=transcript|length=16743bp|location=Sequence derived from alignment at scaffold_384:11564..28306- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_384:11564..28306- >TCONS_00063203 ID=TCONS_00063203|Name=TCONS_00063203|organism=Clytia hemisphaerica|type=CDS|length=19386bp|location=Sequence derived from alignment at scaffold_384:11564..28306- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063203 vs. Swiss-Prot (Human)
Match: HCN1 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Homo sapiens GN=HCN1 PE=1 SV=3) HSP 1 Score: 451.825 bits (1161), Expect = 7.206e-139 Identity = 231/514 (44.94%), Postives = 343/514 (66.73%), Query Frame = 3
Query: 2190 IQRRVRSWIAPANTSANVKIFGGKRAVQIEQQRSKAAG-WVIHPYSSLRYYWDXXXXXXXXXXXXXXXXXVAFFSESNTSFVTWIVVHTFSDIVFMLDIVFNFRTGYRKDEPGHFISFVLQPKKIAKNYFKSWFLIDLISSFPFDNIILLISGGNTDSYGLGVKSAFRGFKFXXXXXXXXXXXXXXXXXXMRYVSKYEDF----YNLTASVIRYIKLVCMMLMVAHWNGCLGFLVPMLQDFPVDSWVALNNLQEAHWTEQYGWALFKALSHMLCIGYGRFIPRLLSEACITIFSMVTGATFYALFIAHSMAYIQQRDSARRLYSEKFQQIEEYMRYRDLPQNVREKITDYYEHKYSQKRLFNELEILSEVSKPLRDDIVNHNCRDLIECVPFLREGGPDFITQVTNSLTFDVYLAGDIIIKEGTFGDEMFFIRNGSVDVIASGQYVTTLVEGDYFGEITMLTSARRVATITAVTVCDLFILTADNLNKTLEEFPEMRAVMEKVALNRLLRLREK 3716
+QR+ S + P ++++FG ++AV+ EQ+R K AG W+IHPYS R+YWDLI++++++ N++++P+ + FF+E T+ WI+ + SD VF+LD++ NFRTG ++ I L PK I NY KSWF++D ISS P D I L++ G DS A R +F +++ LL LL+L RL +RY+ ++E+ Y+L ++V+R L+ MML++ HW+GCL FLVP+LQDFP D WV+LN + W +QY +ALFKA+SHMLCIGYG P +S+ IT+ SM+ GAT YA+F+ H+ A IQ DS+RR Y EK++Q+E+YM + LP ++R+KI DYYEH+Y Q ++F+E IL+E++ PLR++IVN NCR L+ +P P+F+T + + L F+V+ GD II+EG G +M+FI++G VI L +G YFGEI +LT RR A++ A T C L+ L+ DN N+ LEE+P MR E VA++RL R+ +K
Sbjct: 94 MQRQFTSMLQPGVNKFSLRMFGSQKAVEKEQERVKTAGFWIIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITFFTEQTTT--PWIIFNVASDTVFLLDLIMNFRTGTVNEDSSEII---LDPKVIKMNYLKSWFVVDFISSIPVDYIFLIVEKG-MDSEVYKTARALRIVRFTKILSLLRLLRLSRL---IRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPLLQDFPPDCWVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRY-QGKIFDEENILNELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKK 597 The following BLAST results are available for this feature:
BLAST of TCONS_00063203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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