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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063260 ID=TCONS_00063260|Name=TCONS_00063260|organism=Clytia hemisphaerica|type=transcript|length=2493bp
TAAAGTCAGGCTTAAGTTTGACATAATTTTAATctcatttcttttgtatt
ttctccAGACACACATATTAACCGAAAACAGAAAATACTTTTAATGTAAA
CAACAACAAGATAACGCATATATAAAAAAGCATATaaactaaattttcaa
aaaaacgaaAACGGCAAGGATCATGATGGTGAAGTTACAGAGAAATTTAT
CACAAGGCTCGTTTTACACTACCATTTTACTAATGTTGATCATTAGTACA
CAAACGATGAACGCAGAAAAGCCTTCAGCTGAGGTTAtcgaagaaataaa
aaagatcaTACTTCTAAAGATTGGCGTGGATAAACCGCCCCCACCCGACA
CATCAGAACGCCCGAACtttcaagaacaagttaaagcACAATCTATCAGA
ACGTGGCGACGAAATACACGATTTCAAGCTGAACATGAAGATAGAGCCTT
ATCTAAGATACAAGCCAAACCAATTAACAAAGctggatttcgtgtgtttt
ctttcaaaagcgAGCAATTCTTTCAAAAAGGATACGCAATCAAGTCCGCA
AAATTAACGTTCATCCCTGGTAAAGATTTAACATCCAAAACAGGACCACA
ATCACAAATTGAAATACAACGTCGTAAAATCGTACGATACACAATCGACG
CGTTGTCAAAATTAACCGTCGTCGTCGATATCAAAGGTGACATTGATCTA
TGGAAGAAAAAACACGGCTCAAAAGCGGACTATCGATTAAAATTCAAATG
TTCTTCAAAAGTATGCATTGATTCAACTACCATACCATTTATAGATTTGG
AATATCGTAAAATAAGTACCAAAGTTAAGAAGAGTTCAAATCCTGGTCAA
ATATGCAGCCCTGGTGGATGTTGTCGAAAGACTGTAACAGTATCTATTAA
GGATCTCGGTTGGAGCGATTGGTTTTTCATGCCAGAAAGTTTTGACTATC
ATTACTGTGTAGGGACCTGCTCTAATATGCAGAATTCGTTATATTTCAGA
CTATTGAAAAGCTTAAATTCATCAACTTGTTGTGCGCCAACTGAACTTAC
GGGCATGCGCGCTTTGTATCGTATTAATAAACTAGTACATGATCGATATA
TTAAAAACTTGACACCTAAAGCATGTGCTTGTGGTGGTATTGCGGGTGTG
CGGTGAACTGAGTTGGGTTTGAGCGCCGCTTTGATTTGACACTCTGTGAT
TGGCTAAAGTTAAAAGTTGTAGATTTTGCAAAGAATACCAACCTAACGtt
gaaaattaaagaattgGATCATGGGCTTTTTGGTCGTAATACCTAATTTG
AGTATAATAAGTCACCATACTTGAAAGCAGCcgaacaacattgtttcaac
gtccatttCACGTCCGTGaaatccatataacgttagatgaacgttgaaaa
aacgttgccTACCCAGCTGGTGGTACAAGGTGCATTGTATTTTGCCAGTA
TAACGAAAAGGGTTTATGTATTTGGTATCCATCCTAAAAGGGATTGGAAC
CGGACCAGATTGTGTTACCTCAAACAATTAACGCAATTTCAAGATGACTT
CATCCAAAGACTATTTGTTGGTCTGAAGAAAAATATGATTGGacgattta
aaatttttttctagctGGGCTAGAGAGAAGAacttcttatttaaaaaatt
cttgatttaaaaaaaaaatcagactAACTGTTTCAAAATTCAACTACGAA
ATCCTTGTGGGCTTGGGAGTAGACCCTCCACAAGTTTTTCGGGTTTACTG
TTTGTGGTTTAGACTTTGACAGGtttagctttcttttttttgacactttt
ttttatttaactaaTGACTAATGACTAATACTTAGACCTGTCAAAACTAA
GTTttggttcaaaaattttagtttctttGTCTTGTAAAGCGTTGTCCGGA
CAATGAGTGCGTACATAGCTGAAACGGTTGTGACGAATCATACCCTAGAT
TTTCATTAATTCTGTCAAAATTTGTGGCTTCAAATGTACATAGAAACTCA
GACTCAAATTTGAACTCAAGTGGATTCAAGATTTCCGGGACCTTATGTAA
ATAATGAACAGCAGACCAGCATTGTTTCTTAAGCTGCTTTTCTGAGACAA
AAAATCTATAGTAGATTTATTTTACCGTGAAATCTTTACGGTAATTTTTT
TATACGAAGGGGCTGTTGGCTTCCACTGAAGGATTCTCGCTCCTTATATT
TATATTACCTgcagttttgtagaggtctgtgcgAGCGATTCAGACTAGAA
ATTTTTGGGGCTAAAACTTTAAGGGGTTGCTCGGTGAAATTTTCTAAAAG
ttcttaaaagatttttaatttgtGTTTTGTAGTTTTTTTACTAACAATTT
GTAGATATGAATATTAAGTAACATCTTTATGTAGGTAAAGCTAATTTTTT
TGATACTATTATTTTAGACACAGCTTTCTTCAAGAAGGCtataattttca
tgaaaaaactaaaatttacatttgcATTGACACACAAATCAAA Run BLAST on NCBI protein sequence of TCONS_00063260-protein >TCONS_00063260-protein ID=TCONS_00063260-protein|Name=TCONS_00063260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MMVKLQRNLSQGSFYTTILLMLIISTQTMNAEKPSAEVIEEIKKIILLKI
GVDKPPPPDTSERPNFQEQVKAQSIRTWRRNTRFQAEHEDRALSKIQAKP
INKAGFRVFSFKSEQFFQKGYAIKSAKLTFIPGKDLTSKTGPQSQIEIQR
RKIVRYTIDALSKLTVVVDIKGDIDLWKKKHGSKADYRLKFKCSSKVCID
STTIPFIDLEYRKISTKVKKSSNPGQICSPGGCCRKTVTVSIKDLGWSDW
FFMPESFDYHYCVGTCSNMQNSLYFRLLKSLNSSTCCAPTELTGMRALYR
INKLVHDRYIKNLTPKACACGGIAGVR Run BLAST on NCBI transcript from alignment at scaffold_385:423267..427059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063260 ID=TCONS_00063260|Name=TCONS_00063260|organism=Clytia hemisphaerica|type=transcript|length=3793bp|location=Sequence derived from alignment at scaffold_385:423267..427059+ (Clytia hemisphaerica)
TAAAGTCAGGCTTAAGTTTGACATAATTTTAATctcatttcttttgtatt
ttctccAGACACACATATTAACCGAAAACAGAAAATACTTTTAATGTAAA
CAACAACAAGATAACGCATATATAAAAAAGCATATaaactaaattttcaa
aaaaacgaaAACGGCAAGGATCATGATGGTGAAGTTACAGAGAAATTTAT
CACAAGGCTCGTTTTACACTACCATTTTACTAATGTTGATCATTAGTACA
CAAACGATGAACGCAGAAAAGCCTTCAGCTGAGGTTAtcgaagaaataaa
aaagatcaTACTTCTAAAGATTGGCGTGGATAAACCGCCCCCACCCGACA
CATCAGAACGCCCGAACtttcaagaacaagttaaagcACAATCTATCAGA
ACGTGGCGACGAAATACACGATTTCAAGCTGAACATGAAGATAGAGCCTT
ATCTAAGATACAAGCCAAACCAATTAACAAAGGTATGTTATTATTAGTAC
CACCCCTTGGTTCAATGACCCTATAATGATATgtaaagtctccataactc
gacaaaatattcacaaatatgttcgagttaaggatatattcgagttatgg
agtaaggcaTTGTTGATCagttaactgaagggatcatAAAACTTAATCGA
GTCAACAGGAAAGTCGagttatagaagttcgagttaaagagattcACTGT
AGTATGTGGATATGAAAATAGACTTTCTAAACAAAAGATAGGAACCAAAA
ATGGAGTATAAATATGTTTTATCCCCATGAAATCTTTGGTCGGGGAAAAT
TGACCTGTAATTTCTCAAATGttttaataataaaattttcccCACTAact
ttcaatcattttttttctccccGATAAGTTAAATATATCCCGTAGCTTAA
GTGTGACTTGCTATTTTCGCTGCTATCATCCTTTCACTATTCCCTTCGTT
TCCAGAAAGAACTGAAGTTGAATCGTGCTCAGTCCCAGTACTCATGATGT
GAAACATACTGGTTTTTTACCAGTAGTTGTAAATCTAAGCTACAGAAAAA
CTGTTTAAAATTTGCGACTATTGGCTGAATATAATGAATAAAAAAGACAC
GGTGAGGGTTAGTGTCCAGGAATTTTAACGATTCAAACAGTATAACAATC
ACACAATTTAGCTGTGGTTCAAATTCTTTCACAGCATTTTTGTCAGTTTG
AGCTCCTTGACATGACAAAAGTTACATTAAAAGATTGCACTTTTTTTACG
AAAGTGTCAACCTGTCAAGAAATATTAAAgctatcaaaatattatttttg
atgaaatgGATCCGTTTAGTTTGGTCGTAAATCATAGAGTCTTGTCATAA
TTTATATACCGGTGTTCGAACCCTCAAAAGTCGATTTATTTGACCTTGAT
AAAGAGAAGTCTATACGGTTATATGCCTCGTGGTCGTACTATCCCTTCGG
CTGTCAATCATCTGTCAAGCAGGGTCGCTCCTTTAGATAGGTGCATAAAT
CAACTAAATAAGTTTTGTGAGATTTTAAAACTTGATAAAACGGTTCATTT
TTTGATCATTGTATATCCCTAAGTCCATTACCGACTTGTATCTGTGTTTT
CTGCAACTGAGACGGTTAGCTTCTAATTTGTCTAGATCATGACTCTCTGA
GGACGAGGGCGAAATCTGTACTTTTactgtcctcgattttgcggatCAAA
ACTGCggatttttccaaatcgctttaaAAGTGCTACTCATTaacatttaa
aataattttttttcataatttgtattttttagctggatttcgtgtgtttt
ctttcaaaagcgAGCAATTCTTTCAAAAAGGATACGCAATCAAGTCCGCA
AAATTAACGTTCATCCCTGGTAAAGATTTAACATCCAAAACAGGACCACA
ATCACAAATTGAAATACAACGTCGTAAAATCGTACGATACACAATCGACG
CGTTGTCAAAATTAACCGTCGTCGTCGATATCAAAGGTGACATTGATCTA
TGGAAGAAAAAACACGGCTCAAAAGCGGACTATCGATTAAAATTCAAATG
TTCTTCAAAAGTATGCATTGATTCAACTACCATACCATTTATAGATTTGG
AATATCGTAAAATAAGTACCAAAGTTAAGAAGAGTTCAAATCCTGGTCAA
ATATGCAGCCCTGGTGGATGTTGTCGAAAGACTGTAACAGTATCTATTAA
GGATCTCGGTTGGAGCGATTGGTTTTTCATGCCAGAAAGTTTTGACTATC
ATTACTGTGTAGGGACCTGCTCTAATATGCAGAATTCGTTATATTTCAGA
CTATTGAAAAGCTTAAATTCATCAACTTGTTGTGCGCCAACTGAACTTAC
GGGCATGCGCGCTTTGTATCGTATTAATAAACTAGTACATGATCGATATA
TTAAAAACTTGACACCTAAAGCATGTGCTTGTGGTGGTATTGCGGGTGTG
CGGTGAACTGAGTTGGGTTTGAGCGCCGCTTTGATTTGACACTCTGTGAT
TGGCTAAAGTTAAAAGTTGTAGATTTTGCAAAGAATACCAACCTAACGtt
gaaaattaaagaattgGATCATGGGCTTTTTGGTCGTAATACCTAATTTG
AGTATAATAAGTCACCATACTTGAAAGCAGCcgaacaacattgtttcaac
gtccatttCACGTCCGTGaaatccatataacgttagatgaacgttgaaaa
aacgttgccTACCCAGCTGGTGGTACAAGGTGCATTGTATTTTGCCAGTA
TAACGAAAAGGGTTTATGTATTTGGTATCCATCCTAAAAGGGATTGGAAC
CGGACCAGATTGTGTTACCTCAAACAATTAACGCAATTTCAAGATGACTT
CATCCAAAGACTATTTGTTGGTCTGAAGAAAAATATGATTGGacgattta
aaatttttttctagctGGGCTAGAGAGAAGAacttcttatttaaaaaatt
cttgatttaaaaaaaaaatcagactAACTGTTTCAAAATTCAACTACGAA
ATCCTTGTGGGCTTGGGAGTAGACCCTCCACAAGTTTTTCGGGTTTACTG
TTTGTGGTTTAGACTTTGACAGGtttagctttcttttttttgacactttt
ttttatttaactaaTGACTAATGACTAATACTTAGACCTGTCAAAACTAA
GTTttggttcaaaaattttagtttctttGTCTTGTAAAGCGTTGTCCGGA
CAATGAGTGCGTACATAGCTGAAACGGTTGTGACGAATCATACCCTAGAT
TTTCATTAATTCTGTCAAAATTTGTGGCTTCAAATGTACATAGAAACTCA
GACTCAAATTTGAACTCAAGTGGATTCAAGATTTCCGGGACCTTATGTAA
ATAATGAACAGCAGACCAGCATTGTTTCTTAAGCTGCTTTTCTGAGACAA
AAAATCTATAGTAGATTTATTTTACCGTGAAATCTTTACGGTAATTTTTT
TATACGAAGGGGCTGTTGGCTTCCACTGAAGGATTCTCGCTCCTTATATT
TATATTACCTgcagttttgtagaggtctgtgcgAGCGATTCAGACTAGAA
ATTTTTGGGGCTAAAACTTTAAGGGGTTGCTCGGTGAAATTTTCTAAAAG
ttcttaaaagatttttaatttgtGTTTTGTAGTTTTTTTACTAACAATTT
GTAGATATGAATATTAAGTAACATCTTTATGTAGGTAAAGCTAATTTTTT
TGATACTATTATTTTAGACACAGCTTTCTTCAAGAAGGCtataattttca
tgaaaaaactaaaatttacatttgcATTGACACACAAATCAAA Coding sequence (CDS) from alignment at scaffold_385:423267..427059+ >TCONS_00063260 ID=TCONS_00063260|Name=TCONS_00063260|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_385:423267..427059+ (Clytia hemisphaerica)
ATGATGGTGAAGTTACAGAGAAATTTATCACAAGGCTCGTTTTACACTAC
CATTTTACTAATGTTGATCATTAGTACACAAACGATGAACGCAGAAAAGC
CTTCAGCTGAGGTTAtcgaagaaataaaaaagatcaTACTTCTAAAGATT
GGCGTGGATAAACCGCCCCCACCCGACACATCAGAACGCCCGAACtttca
agaacaagttaaagcACAATCTATCAGAACGTGGCGACGAAATACACGAT
TTCAAGCTGAACATGAAGATAGAGCCTTATCTAAGATACAAGCCAAACCA
ATTAACAAAGctggatttcgtgtgttttctttcaaaagcgAGCAATTCTT
TCAAAAAGGATACGCAATCAAGTCCGCAAAATTAACGTTCATCCCTGGTA
AAGATTTAACATCCAAAACAGGACCACAATCACAAATTGAAATACAACGT
CGTAAAATCGTACGATACACAATCGACGCGTTGTCAAAATTAACCGTCGT
CGTCGATATCAAAGGTGACATTGATCTATGGAAGAAAAAACACGGCTCAA
AAGCGGACTATCGATTAAAATTCAAATGTTCTTCAAAAGTATGCATTGAT
TCAACTACCATACCATTTATAGATTTGGAATATCGTAAAATAAGTACCAA
AGTTAAGAAGAGTTCAAATCCTGGTCAAATATGCAGCCCTGGTGGATGTT
GTCGAAAGACTGTAACAGTATCTATTAAGGATCTCGGTTGGAGCGATTGG
TTTTTCATGCCAGAAAGTTTTGACTATCATTACTGTGTAGGGACCTGCTC
TAATATGCAGAATTCGTTATATTTCAGACTATTGAAAAGCTTAAATTCAT
CAACTTGTTGTGCGCCAACTGAACTTACGGGCATGCGCGCTTTGTATCGT
ATTAATAAACTAGTACATGATCGATATATTAAAAACTTGACACCTAAAGC
ATGTGCTTGTGGTGGTATTGCGGGTGTGCGGTGAATGATGGTGAAGTTAC
AGAGAAATTTATCACAAGGCTCGTTTTACACTACCATTTTACTAATGTTG
ATCATTAGTACACAAACGATGAACGCAGAAAAGCCTTCAGCTGAGGTTAt
cgaagaaataaaaaagatcaTACTTCTAAAGATTGGCGTGGATAAACCGC
CCCCACCCGACACATCAGAACGCCCGAACtttcaagaacaagttaaagcA
CAATCTATCAGAACGTGGCGACGAAATACACGATTTCAAGCTGAACATGA
AGATAGAGCCTTATCTAAGATACAAGCCAAACCAATTAACAAAGctggat
ttcgtgtgttttctttcaaaagcgAGCAATTCTTTCAAAAAGGATACGCA
ATCAAGTCCGCAAAATTAACGTTCATCCCTGGTAAAGATTTAACATCCAA
AACAGGACCACAATCACAAATTGAAATACAACGTCGTAAAATCGTACGAT
ACACAATCGACGCGTTGTCAAAATTAACCGTCGTCGTCGATATCAAAGGT
GACATTGATCTATGGAAGAAAAAACACGGCTCAAAAGCGGACTATCGATT
AAAATTCAAATGTTCTTCAAAAGTATGCATTGATTCAACTACCATACCAT
TTATAGATTTGGAATATCGTAAAATAAGTACCAAAGTTAAGAAGAGTTCA
AATCCTGGTCAAATATGCAGCCCTGGTGGATGTTGTCGAAAGACTGTAAC
AGTATCTATTAAGGATCTCGGTTGGAGCGATTGGTTTTTCATGCCAGAAA
GTTTTGACTATCATTACTGTGTAGGGACCTGCTCTAATATGCAGAATTCG
TTATATTTCAGACTATTGAAAAGCTTAAATTCATCAACTTGTTGTGCGCC
AACTGAACTTACGGGCATGCGCGCTTTGTATCGTATTAATAAACTAGTAC
ATGATCGATATATTAAAAACTTGACACCTAAAGCATGTGCTTGTGGTGGT
ATTGCGGGTGTGCGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063260-exon-scaffold_385-1491911889:423267..423748 | TCONS_00063260-exon-scaffold_385-1491911889:423267..423748 | Clytia hemisphaerica | exon |
| TCONS_00063260-exon-scaffold_385-1510915933:423267..423748 | TCONS_00063260-exon-scaffold_385-1510915933:423267..423748 | Clytia hemisphaerica | exon |
| TCONS_00063260-exon-scaffold_385-1575043694:423267..423748 | TCONS_00063260-exon-scaffold_385-1575043694:423267..423748 | Clytia hemisphaerica | exon |
| TCONS_00063260-exon-scaffold_385-1491911889:425049..427059 | TCONS_00063260-exon-scaffold_385-1491911889:425049..427059 | Clytia hemisphaerica | exon |
| TCONS_00063260-exon-scaffold_385-1510915933:425049..427059 | TCONS_00063260-exon-scaffold_385-1510915933:425049..427059 | Clytia hemisphaerica | exon |
| TCONS_00063260-exon-scaffold_385-1575043694:425049..427059 | TCONS_00063260-exon-scaffold_385-1575043694:425049..427059 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:423267..427059 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008083 | growth factor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008083 |
growth factor activity |
Blast
The following BLAST results are available for this feature:
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