TCONS_00063273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063273
Unique NameTCONS_00063273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1872

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063273 ID=TCONS_00063273|Name=TCONS_00063273|organism=Clytia hemisphaerica|type=transcript|length=1872bp
GTGAACTTTCTTGTTGATAATCAGCAACatacaaatattttaattttctc
tttttttcatttcaatacaaaagaaaatagaGACAAATAGATCAGAACAA
TTTGTCAGATatagatttttaaatacacTTATTAAACAGCCAGAAACCAG
CAGTTACCTTTCGCTGCGTACAAATATGCCATATAAAGATCCAATCAAAG
GCCTTGAGAGGCGCATGATGTCTATGTCCGATGATGATGCTGATCTAGAT
TCAACTCTTCTCCTTGACTGTTTACGTAATGATTCCGAAGAAATCTATCA
TGTTCGTATCAATAATATTACGCTGGAGAAAGCGATTCTGTTGGCAATTT
TTGATACATTGAAAACAACGAAAACAATGAGGCATTTATCGCTAGCAGGA
ATACATTTCAAAGATGAAGAAGGATTGCTCTTTAATGAAGCAATGAAGGA
AAATACCACCATTGAAACATTGAATCTGGAATCAAATGAATTAACCAACA
TTTGTATTGAGCCGCTATGTGAGATTTTGGAAACACATCCTGCAATCAGA
GAATTCAAATGTTCACACCAGAAACATGGTCTTGGATCACGTGGCGAAGA
AGCCATGGCCAGAGCATTGAACAAAAATGAACGACTCTTGAAAATCAGTT
ATCCTTTCAAAGTTCCTTCAGCAAGAAGTGTGGCAGATAGGTGTCAAATC
AGGAATGGAGAAATATTGCGTCAAAAACGAACGAAGGGTGAAGATTTTTA
TAATTACAAAGAAGAGATAAAACAACGCGACGCGCATGTCCAACCATGGA
TCAAAGTACAAACCGTAGATAAGAACGAACAAATGAAATCCGATCTAGCT
GACCAACGAGGAAGGATGAAATCAGTGGGATCAGTATCGCAAATGCGAGC
AGAATCAAAATTACGAGCTCGCGAAAACGCGAAACCAACTATGGACAATG
AGTTAGCTAGTAAACTGAGCGCAGCTCGGAAATCTAGAGGCCGCTCTATC
AAAGCCTCATAAAATAGTAGGCATGGTGGGAAGGTAAGATGAGAAGGAAA
AATATTAGTAGAAAAATAACAAGTAATCAATGTAAATAGTTATGGTTTAT
CAAATTAATCTTGAGAtctaaattttaacaaaaaagtgTCACTTGAACTT
AAAGTCCATCGGTTTAACCATCCACTCTTTTAGCTACTGTGCCGAAACCA
CCATCAGGAGTCTAAGCATGTTGCCTTAGTTTTTCAGGCTAGCaaaaata
cacccccttctcgcagacTCACTggaaacccttcccactggaaaaattgg
ccaaaatatcgtccccagtggaaagttCTCCTTGCTTCTCAACTTTTGTc
cccgttgaaaataatcaaatacgGTAATCCTCACTGTGAGAtatttatta
ttgttattgttcCATCCCCActaagaattgaaatccccagccataaagaa
TATCGAAATATGAAATCTTATCAATTTTGGTCAGATATCTTTATCCTCAC
TGCTCGAAAAGTTCTCaccgggtctatgagaaggggtgTAAAAGTAGTGG
TCACTCaaagcgaatggactttagATTATCATTATTGACACCGTCTGAAA
AAACTTCCTTTGAAAATTATATCcctaatattttgatttttataaaaaaa
gtcagTTAGATTATTAGTCGTACTAATATGAAAAAATGCTGTAAATATTT
TGTAAGTATGCTaatatcattatttttcaataaaacagtAATTATCTCTA
ATTTAGCCCTTTAAAGATCATATTCTGGACTTAAACGTTTATTAAACCCA
AGATTCCCTTTTGTTTAGTACTGAAACTTTTTCTAAATCACAGTATTATC
CTAAAATATGGGGAAATTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_385:183441..189300-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063273 ID=TCONS_00063273|Name=TCONS_00063273|organism=Clytia hemisphaerica|type=transcript|length=5860bp|location=Sequence derived from alignment at scaffold_385:183441..189300- (Clytia hemisphaerica)
GTGAACTTTCTTGTTGATAATCAGCAACATACAAATATTTTAATTTTCTC
TTTTTTTCATTTCAATACAAAAGAAAATAGAGACAAATAGATCAGAACAA
TTTGTCAGATATAGATTTTTAAATACACTTATTAAACAGCCAGAAACCAG
CAGTTACCTTTCGCTGCGTACAAATATGCCATATAAAGGTGAGTAAGTAT
CTATTGTATTGTATTCCTTTTAAAATTCTTTTCACTGAGCCTCATTTGGA
AACAGTTCTCTGTTTGGTGACCATAAAGTTGTTCAAGTCTTGNTTTCATT
GAGCCTCATTGAGAAACAGTTCTCTGTTTGGTGACCATAAAGTTGTTCGA
GTCTTCTCTTGCCCTGGTGTAATGGCACAAGGTATATTATTTTTTGTATT
TCCTGTTCCTTATTACCTACTAAAAGGTAAATTCTATTGATATTCGTTGC
TGTGTCCTGATGCCTTAACAGGTGCTACCGGTGCCACAGCCTCCTCTAAG
ACATGATTAATGGTCTCTATAGTCCTTATTAAGACACTTGGCTCTCACTG
AATATCTATTTAAAGTGACTTTGTAGAAACTTCTTTACTGCTTATAACGC
CTGGGAATTTGAAATCAAAGAATCCCATGACTGTAAAATATAATTCATAT
TTTGCAGGCTATATTTTGCATCTCTAGGTATCTTCAATACTTCAGTAGTG
TAGAATGGTAATTACTCGAATACCACTTACTAAATGGCTTATCTACCTAT
ATTAGCATTATAATGATTAACTCTGAAGTTTGTGGTAACACGTTTAAGAT
AACGTGATTCCAATGTCTCTAGGTGCGTTAGCAAAGCGCGTCTCTAAGTC
TAGCCGACGCGCCGAACAAGCTCTTACCCAGTCCTTTCCTAACTTGATTT
ATTCTGATAGCTTTCAAGAAAGGCTTATATAGTTTACAGTAATCTAGAGT
GGACTAACCTTACAGCCTGGGCACCAACCCTTTTGTCAATTATGTCTTAG
CGGTAAAGAACACTTCTCGGTGCATAAAAGGAGACTTGATATTTGAATCA
CAGCCCTATTGTAAAAACACTTTGCTATGAAGAACTGATATTAGGAACCT
GGGGTCGAGCTTATTATTGACATTTTCATGCATTCATCGTGGGGTAGAAC
TCAATGAATAAACTACCGTAGCTGATGTACAGTATATAATGCTCATCGAC
ACAAAAATTTACGTCAAGGGACCAATATATTTCCTCGAAGTTAGAAAAGA
TTCGAATAACAGAGAGTGTTCACACTACTTCCCTGCTGAGGGGACCAACC
AATGCTTTAGTTCAAATTACCAAAAGATTCCAAATCCTAGATGCTCGATA
TAGCGAGATTATGAATTCCAATAAAGAAATGGCAAAACAACGAACAGCTT
ATTGGATGAATGAAGAACACGCTGTCTACTTAAAACTGACTTTGAAATTA
ATTCTTTTTGCAACTAAGTTTCTCATTAGTTTTGTTATTGTTCTTTCAGA
TCCAATCAAAGGCCTTGAGAGGCGCATGATGTCTATGTCCGATGATGATG
CTGATCTAGATTCAACTCTTCTCCTTGACTGTTTACGTAATGATTCCGAA
GAAATCTATCATGTTCGTATCAATAATATTACGCTGGAGAAAGCGATTCT
GTTGGCAATTTTTGATACATTGAAAACAACGAAAACAATGAGGCATTTAT
CGCTAGCAGGAATACATTTCAAAGATGAAGAAGGATTGGTATGTGAAAAA
ATTTTGTACAATAATTAACCCCCACCTAGCTGGCACATAACGTTGTTTCA
ACGTTCACCTAACGTTATATGGACGTGGACGTTAGATAAACGTCGAAACA
ACGTTGTGTGCCAGCTGGGCAGGGTTACTGGGTTTCTTTTGGAATCATTT
TCTTCCAAACTTTGCTTGATTTCAAAAAATGTTGGTCCAAATTTTTTCAA
AAAACGATAATACTTAGAGGAAGGAAACTTTTTTATTTCAAGACCTTGGA
ACCCTTTTAGCTGGTAGGTTTTTGTATTCCTAAAAGAGAAGTAAGAACTT
TCAATACTCTATATGCTTTTGCTATTCGAAGATATATTTTGATGACTTGA
AAAATTGGAAGATAAATCAGTTTTTTCAATACTAGGATTCTTTTGTCATT
ATTTTCAGCTCTTTAATGAAGCAATGAAGGAAAATACCACCATTGAAACA
TTGAATCTGGAATCAAATGAATTAACCAACATTTGTATTGAGGTAAGCAT
ATAATCTAGCTAAATGCTCTTTAGGATTCGTTTAAAATTCTCCACCCTCT
GTCTCACAGACCCGATGGGAACTTTTCCCCACTGGCAAGATAAAGGTTTC
TAACATCCCCTTCTCACAGACCTGGTAGGATTTTTTTGCAGCCAGTGGGA
ATAGAAATAACTGACTAAAACTCAATGGGGATTGATATTCCCATATTTTC
TATGGCTGGGGGATTTCACTTCTTTTGTTTTCAAGTCAGAAAATTCAGTG
GGAATGGGAAAAATAGCAAAGTAATTTCCTACCAGAGACGACATTTCTAG
TGGGAAGAGGTCCCAGTGGGTCTGTGCGAAGGGGGTGCTTTCTATCCAAA
TCCCAATTATTTGGATAGAAACTATATCATTTCCAGTTCTAAAAATTAAG
TGATGATGGCTCTGTAGTGCATTTATTTACATTAATGAGGTTGATCCAAC
TGGGGCTGAAATTGCAGGGTTATTTTTCCTAGCGGGGACGAAATTTTAGT
CAAATTTTCCAGTTGGACCGAGTCTGTGATATAAGGGGTGTAATTTTTCA
CATCAATGCAATGTGTAGAGGAATTCGGTCATTTTTTTGCCTTTCCTCCA
TAGTATCAAAGGACACATATTATATTATCACAAAATGTCTCACATGGTTT
CATCTGTACCCTCATGAAAAATATAGTTGATAAAAACCTTAGAGAACGAT
AAACCAATATCATACTGAGCCATTTATCAATGCTAGTTTAATATATATTA
ATCAATTAAATCTTTGAAATGTCAAGCTTTTATTGTCCTTTAGCTATCTA
ATCATTAAATCAAACTTTTGAAGCCAAACTTCCTTAAATGTAGATGCCAA
TTGTTTATGTCTGTTTACTTAACAGTTCCTTATGCTGTGATAATCTCGTA
TCTAGTCTCTGCATGAGCTCTTTGAGGTATTTCTCTCTGATCGAGATTAA
TTATTGAGTTGTGCACATGCATATCACGAAAGTTTTAAATTCGTCTCTCA
TGCTCATATGTGATGACATCATGTTTTAAAAATGCTTTAACTCATCCTTT
TCCCTTTAGCTTGACAGCTGAGCGAATCCTTTAAGAAAGAAAAAAGGTCT
TGAATTAACAGCTTCTGGATTCTGATGTGTCAGAACGTTCCATTCTCCAA
GTAACTTTTTTGTAACAGTATTACAAATTGAGAAATCTTTGAATTCGAGA
CAATTTCTTTTTTTGTATTTCAGCCGCTATGTGAGATTTTGGAAACACAT
CCTGCAATCAGAGAATTCAAATGTTCACACCAGGTATAAAATATTACACT
CCTGTCTCGTCAATGCGAGATATCAATGTTATCCACTGTCTTGCAACGTT
GCCTATCTCAATTAACCAGTTTACAACCTTGTCTCAGTGGCCCATTTACT
CCCCTCTAAGCAACAATTTTTCATTATTTCCAAACAAAACCTTTTAATGG
CTGTTGGTAATCCTACACATCTAAGATCTTGTCTCATTGACACTTCTCCA
CCCCTGTCTCAGACTCACACATCCAACAAATTGTCTCAATAAACTACATC
CCTGTCTCTATAACATATTTATACATCACACTCTCACAGTAAAACGATTA
GCTCAATGAGGGGGAGGGCACTGGGTTTACCAACTGACGGTATGTATCGC
AAAAACAAAAAAAATGGTGAAACTCGTACCCTTAGAGTGCATATCAAATT
TTTAACCCCTTTAGAGAAGATTTTCTGGGAAGATTTCTTGATTTTCTCGC
AGATTTACTAAAATTTTCCTTACAATGCGTTTATCAAAAAGTTGACCTTT
ACAGTCTATTTATGCTATCTTGAAAAACCGCCGCACTGTAATGCTTTTCA
GTGAATTTGCCTGACTATACCCTGACCGACCGACCGATGAACTCTCAATA
ATAAACAACACTACATCTTCCTTCAGAAACATGGTCTTGGATCACGTGGC
GAAGAAGCCATGGCCAGAGCATTGAACAAAAATGAACGACTCTTGAAAAT
CAGTTATCCTTTCAAAGTTCCTTCAGCAAGAAGTGTGGCAGATAGGTGTC
AAATCAGGAATGGAGAAATATGTAAATCACTACTTAATTTTTTTCAAATA
TTTTCGACTTTTTACCCTTATTTCACCCCTCTAAACGGTATATATAAGAC
TTTTTAAATTAAAAAAAATTACTTTGCGAAATATTGGAGGCGCCATGGCC
CCCCTGCCACCCGGGTGACGGGGGCCATGGTATTGCTCTTATTTTGTTCT
TCATTTCAGGCAAATTTTACTTATTTCACGCTCAAATATCCTTAAACGTG
CAGAGGTTTCTAATGTGAATGACCCAACTCTGTCACATGTACTCTGTGTG
TTAGATCCACCCGCATGTGAATATTTTGGGATTAAATATTTATCTCCAAC
CCCAATGGCACGCTTAAACAAAAGGTATGAAATGTTTTTCAAATTACTTT
TCAGTGCGTCAAAAACGAACGAAGGGTGAAGATTTTTATAATTACAAAGA
AGAGATAAAACAACGCGACGCGCATGTCCAACCATGGATCAAAGTACAAA
CCGTAGATAAGAACGAACAAATGAAATCCGATCTAGCTGACCAACGAGGA
AGGATGAAATCAGTGGGATCAGTATCGCAAATGCGAGCAGAATCAAAATT
ACGAGCTCGCGAAAACGCGAAACCAACTATGGACAATGAGTTAGCTAGTA
AACTGAGCGCAGCTCGGAAATCTAGAGGCCGCTCTATCAAAGCCTCATAA
AATAGTAGGCATGGTGGGAAGGTAAGATGAGAAGGAAAAATATTAGTAGA
AAAATAACAAGTAATCAATGTAAATAGTTATGGTTTATCAAATTAATCTT
GAGATCTAAATTTTAACAAAAAAGTGTCACTTGAACTTAAAGTCCATCGG
TTTAACCATCCACTCTTTTAGCTACTGTGCCGAAACCACCATCAGGAGTC
TAAGCATGTTGCCTTAGTTTTTCAGGCTAGCAAAAATACACCCCCTTCTC
GCAGACTCACTGGAAACCCTTCCCACTGGAAAAATTGGCCAAAATATCGT
CCCCAGTGGAAAGTTCTCCTTGCTTCTCAACTTTTGTCCCCGTTGAAAAT
AATCAAATACGGTAATCCTCACTGTGAGATATTTATTATTGTTATTGTTC
CATCCCCACTAAGAATTGAAATCCCCAGCCATAAAGAATATCGAAATATG
AAATCTTATCAATTTTGGTCAGATATCTTTATCCTCACTGCTCGAAAAGT
TCTCACCGGGTCTATGAGAAGGGGTGTAAAAGTAGTGGTCACTCAAAGCG
AATGGACTTTAGATTATCATTATTGACACCGTCTGAAAAAACTTCCTTTG
AAAATTATATCCCTAATATTTTGATTTTTATAAAAAAAGTCAGTTAGATT
ATTAGTCGTACTAATATGAAAAAATGCTGTAAATATTTTGTAAGTATGCT
AATATCATTATTTTTCAATAAAACAGTAATTATCTCTAATTTAGCCCTTT
AAAGATCATATTCTGGACTTAAACGTTTATTAAACCCAAGATTCCCTTTT
GTTTAGTACTGAAACTTTTTCTAAATCACAGTATTATCCTAAAATATGGG
GAAATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039653XLOC_039653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063273-exon-scaffold_385-1575043694:189113..189300TCONS_00063273-exon-scaffold_385-1575043694:189113..189300Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1575043694:187563..187801TCONS_00063273-exon-scaffold_385-1575043694:187563..187801Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1575043694:187059..187142TCONS_00063273-exon-scaffold_385-1575043694:187059..187142Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1575043694:185768..185827TCONS_00063273-exon-scaffold_385-1575043694:185768..185827Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1575043694:184980..185124TCONS_00063273-exon-scaffold_385-1575043694:184980..185124Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1575043694:183441..184596TCONS_00063273-exon-scaffold_385-1575043694:183441..184596Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1510915933:189113..189300TCONS_00063273-exon-scaffold_385-1510915933:189113..189300Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1510915933:187563..187801TCONS_00063273-exon-scaffold_385-1510915933:187563..187801Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1510915933:187059..187142TCONS_00063273-exon-scaffold_385-1510915933:187059..187142Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1510915933:185768..185827TCONS_00063273-exon-scaffold_385-1510915933:185768..185827Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1510915933:184980..185124TCONS_00063273-exon-scaffold_385-1510915933:184980..185124Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1510915933:183441..184596TCONS_00063273-exon-scaffold_385-1510915933:183441..184596Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1491911889:189113..189300TCONS_00063273-exon-scaffold_385-1491911889:189113..189300Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1491911889:187563..187801TCONS_00063273-exon-scaffold_385-1491911889:187563..187801Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1491911889:187059..187142TCONS_00063273-exon-scaffold_385-1491911889:187059..187142Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1491911889:185768..185827TCONS_00063273-exon-scaffold_385-1491911889:185768..185827Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1491911889:184980..185124TCONS_00063273-exon-scaffold_385-1491911889:184980..185124Clytia hemisphaericaexon
TCONS_00063273-exon-scaffold_385-1491911889:183441..184596TCONS_00063273-exon-scaffold_385-1491911889:183441..184596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:183441..189300 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130617	0	0	0	9.74939	2.85134	17.2076	21.7635	112.554	82.0612	45.1414	86.4892	12.9728	9.76378	1.82539	1.04314	30.3898	25.7815	21.5588	21.4871	80.7853	78.1179	10.5172	14.1486	11.968	18.412	0.708413	0	0	0.121844
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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