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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063318 ID=TCONS_00063318|Name=TCONS_00063318|organism=Clytia hemisphaerica|type=transcript|length=1508bp
gaaaaaaatattttcagtctTTCATCTTTTACTAATATTCACTGAATATT
TACTTTATGTCTTTATTGTattaaaaatccttttttccGTTTTAAGGTAA
AGTGACGAGAACAATACTGCACTTCTGCGACGTATTATGGCGCGAAGTTT
TCTTACAAAAGAAATAGTTTACTTCCGTGTGGCGATTCCCCGGATTAAAG
ACTATTTTTTAGAGAGgtgaaatgtaaacaaacacgTTTTCAAGATGGCG
CGATAAAAAGTTAGAATTTTGTACACAGGAAAAATCTTTCGAAGAAGATG
TATCGGACATTGAATAAGATATCAAGCAAATCTTCGTATCTTTATTTAAT
AACGATTGCAATACTTAGCATATGGTTAATTTCATGCAAATTCACAATAT
ACAAACTGAATCAGCAATCTGGAAATGTTCTTAGTGTAAAACGAAGAGGA
ACATCACAATTTATCAAGGCTGGTAATAAGATAAACTGTTACATGTTCAT
ATTGATTATGAGTTCCCCAAAAGGGGCTTTAAGGAGAACATCAATGAGAG
AAACTTGGATAAAAACTAACGACGTAAATAAACTGAAAATAGAAAGAAGA
TTCATAATTGGCACCAAAGGGCTGACACCCAATATTCTTAAAGAACTGTC
AAGTGAGCAAGCCAAACACTCAGACTTGCTTTTATTGGATGATTTTGCAG
ACTCGTATTCGAAATTGACAGAAAAACTTTTGAGAACAATTTTATGGATT
GAGAATAATGTTGATGCTAAATTTGTCATGAAAGTTGATGATGATTCATT
TGTACGCCTTGATAAACTTATTCCTTCTTTGTCTGCAAAAGAACACATTG
GGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAAGAATTAAAAGAGCT
GGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGATCATTATCTTCCTTA
TGCAGTTGGTGGTGGATATGTTATTACCTTTGATCTTGTCACATTCATAT
CAAGCAATGCAAACTATTTGTCATTGTACAACAGTGAAGATGTTTCAATG
GGTGTATGGCTTGCATCCATCAAACTGAACCGTTTCCACGATGTGCGTTT
TGATACCTGGTACAAAAGTATGGGATGTAGTAACCTTCATATAGTATCAC
ATAAACAGCAACCTGAAGATATGTATGCTAAACATAACCAATTGACTAAT
AATGGAAAATTGTGTAAAGTTGAAAAAGAACTAATGCTAACTTGGGACTA
CAACTGGAATGAATTTCCATCTAACTGTTGTAGTAAACGTGTTAAGATAT
CatcaattaaaacatttttgtgattttattgCACACAACTTGGGCATATA
TTTTCAaggtgaaaaactttcaattttagtGTAGCAATTATTTTTATgtc
aaaaaaagctaaaaatgaaTATACATTACACAACAAACCAGTTTATTTTC
TATCGAACTCTCTGTTACGGGTATCTTAACCTTTGGTTATTTGTAAAATA
Tagtaatg Run BLAST on NCBI protein sequence of TCONS_00063318-protein >TCONS_00063318-protein ID=TCONS_00063318-protein|Name=TCONS_00063318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MYRTLNKISSKSSYLYLITIAILSIWLISCKFTIYKLNQQSGNVLSVKRR
GTSQFIKAGNKINCYMFILIMSSPKGALRRTSMRETWIKTNDVNKLKIER
RFIIGTKGLTPNILKELSSEQAKHSDLLLLDDFADSYSKLTEKLLRTILW
IENNVDAKFVMKVDDDSFVRLDKLIPSLSAKEHIGRIYWGFFKGNARIKR
AGAWKETKWFLSDHYLPYAVGGGYVITFDLVTFISSNANYLSLYNSEDVS
MGVWLASIKLNRFHDVRFDTWYKSMGCSNLHIVSHKQQPEDMYAKHNQLT
NNGKLCKVEKELMLTWDYNWNEFPSNCCSKRVKISSIKTFL Run BLAST on NCBI transcript from alignment at scaffold_385:587179..590161- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063318 ID=TCONS_00063318|Name=TCONS_00063318|organism=Clytia hemisphaerica|type=transcript|length=2983bp|location=Sequence derived from alignment at scaffold_385:587179..590161- (Clytia hemisphaerica)
GAAAAAAATATTTTCAGTCTTTCATCTTTTACTAATATTCACTGAATATT
TACTTTATGTCTTTATTGTATTAAAAATCCTTTTTTCCGTTTTAAGGTAA
AGTGACGAGAACAATACTGCACTTCTGCGACGTATTATGGCGCGAAGTTT
TCTTACAAAAGAAATAGTTTACTTCCGTGTGGCGATTCCCCGGATTAAAG
ACTATTTTTTAGAGAGGTGAAATGTAAACAAACACGTTTTCAAGATGGCG
CGATAAAAAGTTAGAATTTTGTACACAGGAAAAATCTTTCGAAGAAGATG
TATCGGACATTGAATAAGATATCAAGCAAATCTTCGTATCTTTATTTAAT
AACGATTGCAATACTTAGCATATGGTTAATTTCATGCAAATTCACAATAT
ACAAACTGAATCAGCAATCTGGAAATGTTCTTAGTGTAAAACGAAGAGGA
ACATCACAATTTATCAAGGCTGGTAATAAGATAAACTGTTACATGTTCAT
ATTGATTATGAGTTCCCCAAAAGGGGCTTTAAGGAGAACATCAATGAGAG
AAACTTGGATAAAAACTAACGACGTAAATAAACTGAAAATAGAAAGAAGA
TTCATAATTGGCACCAAAGGGCTGACACCCAATATTCTTAAAGAACTGTC
AAGTGAGCAAGCCAAACACTCAGACTTGCTTTTATTGGATGATTTTGCAG
ACTCGTATTCGAAATTGACAGAAAAACTTTTGAGAACAATTTTATGGATT
GAGAATAATGTTGATGCTAAATTTGTCATGAAAGTTGATGATGATTCATT
TGTACGCCTTGATAAACTTATTCCTTCTTTGTCTGCAAAAGAACACATTG
GGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAAGAATTAAAAGAGCT
GGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGATCATTATCTTCCTTA
TGCAGTTGGTGGTGGATATGTTATTACCTTTGATCTTGTCACATTCATAT
CAAGCAATGCAAACTATTTGTCATTGTACAACAGTGAAGATGTTTCAATG
GGTAAATTGTCTTCTTTTATTTAAGTAGGGAAAGCAGTAATTTTTNAACA
CATTGGGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAAGAATTAAAA
GAGCTGGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGATCATTATCTT
CCTTATGCAGTTGGTGGTGGATATGTTATTAGCTTTGATCTTGTCACATT
CATATCAAGCAATGCAAACTATTTGTCATTGTACAACAGTGAAGATGTTT
CAATGGGTAAATTGTCTTCTTTTATTTAAGTAGGGGAAGCAGTAATTTTT
CGCTTACAATATGGCCTACCTTAAGGCGAGAAATTTCCGCGGGTACAAAT
TTTCGCGAATTTTAGTCGATTTCGCAAAATTAAATACCCACGAAATAAAT
GTATCTAGGAGTCGCATTCGCGAAAATTTATACCTGCGAAAGTAGATTAA
AATTGAAAGTAAGGGGATTTTATAGACCAAGCCACTAACAAGAACAAAAA
AAGGTTAATTTTTTCCGATTCACGAAAATAGATACCCGCAAAATTTTATG
TTTGCATCCATTCGCGAAAATAAATCTCCGCGAAAATTTCTCGCCTTAAG
GTATTTTGCCCTCAAATTTGGAGGTATTTTTTTCATTTTGAGAATGCCTT
ATAAAAAAAATAAGTATTTTTGATTTTCGGTCTATTTTGAAAATTTTTAG
CGTGTATTTAATTTTGCAATTTTGTATTTTTGAAAAGTTTAAACAGTATT
AAATTGCGCGAAATTAAGTACCTGCAAAATTTTGTAACCAACAAAATTTA
ATACCAATAAGGTATTCATGTTTCATGGAATTTAATTTTGCAATTTGTCA
AAAAACAGAAATTAAATTCAGCGACAATTTATTCCTGTGAAAATTTGTTC
CCTCAAGTTATTTTGAGAAATTTAATGTTTACACTTATTTTTGTGGTAGA
CCTAAAACTGATGAAATTACCTTCTGGGAACTAATTTTCCCAAGAACTAA
TTTTTGCAAAAACTTATTTTTGATTTAAAAAATATTAAATTACAATGTAT
TTTTTTGTTAAAAATCTGGTTCTGCAAATCTCCCAAGATCTGCCAAGATA
GCAATTTCTCCCCATTTTGCAAGATTGATTTTTGCGAAAATAGTAAAAAA
TGATTGAAACTGCAAAATCAAATCGAGTGAATTAGTATGATTAAAGATTA
GTAGATGTTTAGCTTGAATTAATCTGTTTATTATTTATAGGTGTATGGCT
TGCATCCATCAAACTGAACCGTTTCCACGATGTGCGTTTTGATACCTGGT
ACAAAAGTATGGGATGTAGTAACCTTCATATAGTATCACATAAACAGCAA
CCTGAAGATATGTATGCTAAACATAACCAATTGACTAATAATGGAAAATT
GTGTAAAGTTGAAAAAGAACTAATGCTAACTTGGGACTACAACTGGAATG
AATTTCCATCTAACTGTTGTAGTAAACGTGTTAAGATATCATCAATTAAA
ACATTTTTGTGATTTTATTGCACACAACTTGGGCATATATTTTCAAGGTG
AAAAACTTTCAATTTTAGTGTAGCAATTATTTTTATGTCAAAAAAAGCTA
AAAATGAATATACATTACACAACAAGCCAGTNAGTAGCAATTATTTTTAT
AGGAAGAATTAGAACGATTTATTTTGAAGAAAAAGTTATTCACCCCTAAA
TGTGGTTTCATTAATCATAACAAAAACAAGTTTTAAATTAAGAAACGTGT
AGTGTAAATGTATATTCATGTATGAAATGTATACCATGTACTTGAAAGAG
TGAAATAAAGGAAAATCGAGGTGTCAAAAAAAGCTAAAAATGAATATACA
TTACACAACAAACCAGTTTATTTTCTATCGAACTCTCTGTTACGGGTATC
TTAACCTTTGGTTATTTGTAAAATATAGTAATG Coding sequence (CDS) from alignment at scaffold_385:587179..590161- >TCONS_00063318 ID=TCONS_00063318|Name=TCONS_00063318|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_385:587179..590161- (Clytia hemisphaerica)
GTGTATGGCTTGCATCCATCAAACTGAACCGTTTCCACGATGTGCGTTTT
GATACCTGGTACAAAAGTATGGGATGTAGTAACCTTCATATAGTATCACA
TAAACAGCAACCTGAAGATATGTATGCTAAACATAACCAATTGACTAATA
ATGGAAAATTGTGTAAAGTTGAAAAAGAACTAATGCTAACTTGGGACTAC
AACTGGAATGAATTTCCATCTAACTGTTGTAGTAAACGTGTTAAGATATC
ATCAATTAAAACATTTTTGTGAATGTATCGGACATTGAATAAGATATCAA
GCAAATCTTCGTATCTTTATTTAATAACGATTGCAATACTTAGCATATGG
TTAATTTCATGCAAATTCACAATATACAAACTGAATCAGCAATCTGGAAA
TGTTCTTAGTGTAAAACGAAGAGGAACATCACAATTTATCAAGGCTGGTA
ATAAGATAAACTGTTACATGTTCATATTGATTATGAGTTCCCCAAAAGGG
GCTTTAAGGAGAACATCAATGAGAGAAACTTGGATAAAAACTAACGACGT
AAATAAACTGAAAATAGAAAGAAGATTCATAATTGGCACCAAAGGGCTGA
CACCCAATATTCTTAAAGAACTGTCAAGTGAGCAAGCCAAACACTCAGAC
TTGCTTTTATTGGATGATTTTGCAGACTCGTATTCGAAATTGACAGAAAA
ACTTTTGAGAACAATTTTATGGATTGAGAATAATGTTGATGCTAAATTTG
TCATGAAAGTTGATGATGATTCATTTGTACGCCTTGATAAACTTATTCCT
TCTTTGTCTGCAAAAGAACACATTGGGAGGATTTATTGGGGATTTTTCAA
AGGAAATGCAAGAATTAAAAGAGCTGGTGCTTGGAAAGAAACAAAGTGGT
TTTTATCTGATCATTATCTTCCTTATGCAGTTGGTGGTGGATATGTTATT
ACCTTTGATCTTGTCACATTCATATCAAGCAATGCAAACTATTTGTCATT
GTACAACAGTGAAGATGTTTCAATGGGTGTATGGCTTGCATCCATCAAAC
TGAACCGTTTCCACGATGTGCGTTTTGATACCTGGTACAAAAGTATGGGA
TGTAGTAACCTTCATATAGTATCACATAAACAGCAACCTGAAGATATGTA
TGCTAAACATAACCAATTGACTAATAATGGAAAATTGTGTAAAGTTGAAA
AAGAACTAATGCTAACTTGGGACTACAACTGGAATGAATTTCCATCTAAC
TGTTGTAGTAAACGTGTTAAGATATCATCAATTAAAACATTTTTGTGAAT
GTATCGGACATTGAATAAGATATCAAGCAAATCTTCGTATCTTTATTTAA
TAACGATTGCAATACTTAGCATATGGTTAATTTCATGCAAATTCACAATA
TACAAACTGAATCAGCAATCTGGAAATGTTCTTAGTGTAAAACGAAGAGG
AACATCACAATTTATCAAGGCTGGTAATAAGATAAACTGTTACATGTTCA
TATTGATTATGAGTTCCCCAAAAGGGGCTTTAAGGAGAACATCAATGAGA
GAAACTTGGATAAAAACTAACGACGTAAATAAACTGAAAATAGAAAGAAG
ATTCATAATTGGCACCAAAGGGCTGACACCCAATATTCTTAAAGAACTGT
CAAGTGAGCAAGCCAAACACTCAGACTTGCTTTTATTGGATGATTTTGCA
GACTCGTATTCGAAATTGACAGAAAAACTTTTGAGAACAATTTTATGGAT
TGAGAATAATGTTGATGCTAAATTTGTCATGAAAGTTGATGATGATTCAT
TTGTACGCCTTGATAAACTTATTCCTTCTTTGTCTGCAAAAGAACACATT
GGGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAAGAATTAAAAGAGC
TGGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGATCATTATCTTCCTT
ATGCAGTTGGTGGTGGATATGTTATTACCTTTGATCTTGTCACATTCATA
TCAAGCAATGCAAACTATTTGTCATTGTACAACAGTGAAGATGTTTCAAT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063318-exon-scaffold_385-1575043694:589111..590161 | TCONS_00063318-exon-scaffold_385-1575043694:589111..590161 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1575043694:587499..587871 | TCONS_00063318-exon-scaffold_385-1575043694:587499..587871 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1575043694:587179..587262 | TCONS_00063318-exon-scaffold_385-1575043694:587179..587262 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1510915933:589111..590161 | TCONS_00063318-exon-scaffold_385-1510915933:589111..590161 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1510915933:587499..587871 | TCONS_00063318-exon-scaffold_385-1510915933:587499..587871 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1510915933:587179..587262 | TCONS_00063318-exon-scaffold_385-1510915933:587179..587262 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1491911889:589111..590161 | TCONS_00063318-exon-scaffold_385-1491911889:589111..590161 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1491911889:587499..587871 | TCONS_00063318-exon-scaffold_385-1491911889:587499..587871 | Clytia hemisphaerica | exon |
| TCONS_00063318-exon-scaffold_385-1491911889:587179..587262 | TCONS_00063318-exon-scaffold_385-1491911889:587179..587262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:587179..590161 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00063318 vs. Swiss-Prot (Human)
Match: B3GT6 (Beta-1,3-galactosyltransferase 6 OS=Homo sapiens GN=B3GALT6 PE=1 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 2.070e-73 Identity = 124/265 (46.79%), Postives = 170/265 (64.15%), Query Frame = 1
Query: 511 SSPKGALRRTSMRETWIKTNDVNKLKIERRFIIGTKGLTPNILKELSSEQAKHSXXXXXXXFADSYSKLTEKLLRTILWIENNVDAKFVMKVDDDSFVRLDKLIPSLSAKEHIGR--IYWGFFKGNARIKRAGAWKETKWFLSDHYLPYAVGGGYVITFDLVTFIXXXXXXXXXXXXEDVSMGVWLASIKLNRFHDVRFDTWYKSMGCSNLHIVSHKQQPEDMYAKHNQLTNNGKLCKVEKELMLTWDYNWNEFPSNCCSKRVKI 1299
S+P+ A RR+ +R TW+ + RF +GT GL + L EQA+H DLLLL D+Y LT K+L + W++ +V +FV+K DDDSF RLD L+ L A+E R +YWGFF G R+K G W+E W L D+YLPYA+GGGYV++ DLV ++ + +YL ++SEDVS+G WLA + + R HD RFDT Y+S GCSN ++V+HKQ EDM KH L G+LCK E +L L++ Y+W+ PS CC +R I
Sbjct: 65 SAPRAAERRSVIRSTWLARRGAPG-DVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLTAKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVKPGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYDWSAPPSQCCQRREGI 328
The following BLAST results are available for this feature:
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