TCONS_00063347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063347
Unique NameTCONS_00063347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063347 ID=TCONS_00063347|Name=TCONS_00063347|organism=Clytia hemisphaerica|type=transcript|length=2188bp
GGCCGCCACCATCAAGCAAAATATTGTAACTGATGAAAATGTTCACCATG
TTCACTGTTATGGAATTCTGAAACAGAAAGAAAGAACCTGAAATTTATTA
GTTCAAGATGGCTGCCAGTATAATTCCATTTGATCCAACCATCACCCTTG
GAAATGTTGTCAATCCATTGAAATTCAAGGAACTCGAAGCAATTGGTAAA
TTGCAAATGGAAATTGACACAAAACAAGATCAACTAAATGGTCTTCTGGC
TGGTAAAAGCAGTTTAGATATGATCATCCAAGAAGTCAAAGCCATGAAAG
TTGACCTTAGTGAAGCTGAGCTGAAAGATGCCTCCAAAGCGATGGATCAA
GAGATTAAGAAAGTTATGAAGGAATACGCTTTGGTTCAAATGGGAAACTT
ACCAAAGATTCAAACACATAAAGCTAAGATTGCCACCATTGCAGATCACG
TCGAATCACCCATGGATTACAACAAATCATTGTTGAAGAAGGATTTACCA
ATCAGCTCGAACACAATCAAGTTGAATTCCCAATACTTCACATTCAGTCA
AGAATCGCAACAAAGTGAAGCCTCCATGGCTGCAATGAAGTCATTCGTCA
GTGGAGAAACCAAATTCTTAGGTGACACCATTGGTGGGAAAGTCTCTGCC
GCTGTTCAACATCAAATGACCAAACAAAGAGAGCTACATGAAATCAGTGG
TACTTTGGTCGTCACAGCAACCTGTACTCACGCTAATGCTGCCATATTTG
CTCCATTCGTAATAGATGCAGACAAGGCAGTCCATGCTTGGAACGATACG
TTCTCAAATAAGATAAGTATGCTGACagaagaagaaatgaaaaagCTGGC
CAAAGAAACTGGTGAATCTGACAAACTTCATTTGGTGTCAGGTGCTACTT
ATGGATCTTGTTTCGTTGGTATGGTTCACACCAAGAAAACTGAATCTAAC
GAGGATACCCAACGCATGTTGTCCACTGCTCAATCCATGTCTGCCAATTT
CGATATTGGAGCCTTCTTTGCCAGCTACTCTGGTGGGTTTGGTGTAGACT
CCAGCTTCTCTAATGATCTGAAAGCTCTTTTGAGTAGCCAGATGGTGTCT
TCACATGTCAGCTTGGTTTGTGAAGGTTGTATCCCTACCATCACCAGTAA
TAAAGTGGAACTTGGTGTCAAAGCGTTTGCTGACTTTGATCCAGCTCAGA
CCATGGAGAAACTGGCAACTCTCAATACTCAAACCAACAAAGCCAATGAA
ACAGTGAGCAGTGCTGCAGACAAGGCTCGCAAAGGAAAAGAAGTCACCGA
GTTGCGTGGCAACGAGATCAAAAACACAATGGCATCATTAAGCAAGATTG
ATGAAGGCAAGGATAGCGTGCTGAATGTCAACTCGCTGATGTCTGGATTG
GAAGATTACGTCACCCAAGCCAAGGAAGCCAAGACCGGTGTACCAATCAA
TTTCTTCATCAAAAGTTTGACCAGAGCTGACATTGCCAAATTATGGCTTG
ACAAATATGCCAGCAAAGTGCCTGAAAAAAAAGCCGCGTCCAAACCAAAT
CCATCAGGAGAGAAACCAAAGCCAGAGAAAGAGGCAGCTGACCCAATGGC
TGGACGAGTAGAAGAAAATCTTGAAAGTGTGGGTCAATTCTCAAAAAGTT
GGGACTTTCAGTGACACTATTGACGTATTGTGCAATTCTTAACGTCCATT
GCATTGACAGTATCTGTACCGGAGTCTAAAAAAACAATGTACGGGGAAAA
GGAATAGtgaaaaatacatttatttataGATTTGTCAACGGTATTTTATG
TTTTGAGAAGTAGTATACCTTATAGTAAACAAATTactttaatttttgaa
tttgaaaattggctttaaccttctgaaaaaaaagttttggtccttatttt
cctttcaaaacctttttttgttttaagtaAGTGAAATATACGGACGACTA
GCATAGTTTTGAAGCAGCCTTTAAACTACACTCCTAagtgatatttttat
ttgaaaacaaaaggtCATAGCTTAACAAAAAGGTCAAATCTTATATcaat
tttgtaagtattttctAATGAGGAAATACCTACCTATGACTAATTTATCA
AAAGTTCTGCTGATACAATATCAATATTTTGCGGTTTTAATATTTCTATG
CTGTATGTAAGGATAGAcatttacaaaaatgatttgGA
Run BLAST on NCBI

transcript from alignment at scaffold_386:58963..64014+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063347 ID=TCONS_00063347|Name=TCONS_00063347|organism=Clytia hemisphaerica|type=transcript|length=5052bp|location=Sequence derived from alignment at scaffold_386:58963..64014+ (Clytia hemisphaerica)
GGCCGCCACCATCAAGCAAAATATTGTAACTGATGAAAATGTTCACCATG
TTCACTGTTATGGAATTCTGAAACAGAAAGAAAGAGCAAGTTTTTCATAA
GAGTACACGTTTTTTTTATATAAGAACATCCAAAAAATTTTAAGCCTTCG
GATGTTCTTAACTTTTTGAGTTTTGAGCCTAAAAATGTTCTTAATTTCAC
CATTTTGTGAGTATTTTTATGCCATTCTCTAACAAATTGGATGTTTTAGA
GTCAGCAATGCCTTAAAATGTTGGGATGAGCTGGAGTTTTTACAAAATAC
TTCACTAATTGTTCATTTAAAGTGATAGAGATGACGCGTTCTTTATAAAA
AGTAATAAGATTCTTTTATTACATCTTAACGACCAACCAAATCAAAATGT
TCTTAACTTGTTCTTAAAATTTTGGCCATCGAAGCCTTATGTTCTCATAT
AGTTTGTTCTTATAAATGGACGTGTATTCAATGTTCTTAACTTCTTAATT
TGTTGAGTTTTATGCCTAAATATGTTCTTAACGTTTGTTTGTATTTTCAC
TATTTTTACGGTTTTTTGTCCATTTTCAAAAAATTAGGTGTTTTAGGGTG
GTCCACAAAGCCTTACAATGCTCTTAGCTTGTTCTTAATATTTTGACCAT
CGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAGTGTTTTCA
GCTGAGGTAAAATAACGGCTTGCCTCTGACCATGTTCATTTTTCAGAAAA
TATCTGACGGGACCGTGAAATTACTAAATAAAAAACCACTTTCAGGGTTG
GAATTAGAAATAATTTTAGATTATATTTAATTTGAGTTTTTTGACTACAT
AATCTATCAGGGTCAAATTTCGTGTGTTCAAATATTGATAAATAATTACA
TTTGaggctttattttttgaaactgCCGTTGTACGttcccgtcggccgtc
aaggttgGTGCTACCCGGTTTATTAGATTGAAAAGTAGTAAAGTCTCGGT
AAgaagtaaatttttcttttgattgcCGTTACAGTTTTAGTCGGGATTTT
CGAAATTGCAACTATAAATTCTATAAATTTTATTTCTAGACCTGAAATTT
ATTAGTTCAAGATGGCTGCCAGTATAATTCCATTTGATCCAACCATCACC
CTTGGAAATGTTGTCAATCCATTGAAATTCAAGGTACattgttctctaaa
aagtgCTAGCTATTTACAGCATTCAATAAAAACCAGGAGTGTTGCTGTTG
CTGTTTTGAAataaccagtaaatttttgtagAGTGTTGGCTGCTCTCATT
TTCAGCATTTAGAACCACAAGCTGTTTTTATCCTGTTcgtatttttttag
aaaaattgaggTACTTGCAGGCTTACTACGCTGTTTAAATTGTTTTTCCT
CTGATTGTCTcgaaattcattcattcaattCATGGCATCAACTGTATtaa
gttgttcttaattttcaattttttgatatcTTGATTCTCGTTCTTACGAA
attgttttaataaaaaaagattcGGTAGCCAagaaaaaatggggaaaaac
cCTTGCAGATGACTCACTCCGCTCACTCCACTCCTCACTCACTCACTCCA
CCCACTCTTCACTCTGAAGATGATAGCTGAAAGAAGGTTTTTAACGAAGA
CTTTGATTATTTTACTAAATTCTTTTTCCTAGTGGGAGCTTCTTAGTTTC
TCAATATTGATACGTGAGATTTTAAGAacgtaaaatgaaaatttcaaaat
cagttttttcctttttataacGAAGGAACTCGAAGCAATTGGTAAATTGC
AAATGGAAATTGACACAAAACAAGATCAACTAAATGGTCTTCTGGCTGGT
AAAAGCAGTTTAGATATGATCATCCAAGAAGTCAAAGCCATGAAAGTTGA
CCTTAGTGAAGCTGAGCTGAAAGATGCCTCCAAAGCGATGGATCAAGAGA
TTAAGAAAGTTATGAAGGAATACGCTTTGGTTCAAATGGGAAACTTACCA
AAGATTCAAACACATAAAGCTAAGATTGCCACCATTGCAGATCACGTCGA
ATCACCCATGGATTACAACAAATCATTGTAGGTTTACCTTAGTTGAATGA
ATTTtcacttcaatatttttttacgaAACGTCATTCTCTTTTATTTAGCC
AAAATTCAGATTTAATAATTTAAATTATTAGGGTACAAACTTCAGTTTTT
TACTTTACGAATCTGCAACAATCAAATTTTGGTACACCTGTTTTAACTGA
TTAGTattaccatagtataagaaagccgcggctggaatgagtacagctga
atttctgttgttctatctatgtcgtaagaacgaatttttttatggtGCAG
TGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTGACAACTTCcattgtcaatttaatttgacttttaac
aaactccctcgttagacgtaattttgctcataaacgcaaatctcttgata
attcacgcattcataatcaaagtaaaagaaaagactcttgatttaaaagt
actagaacgtcagaatgtcagtgctttaagaaaattgagtgcctcgaaat
gccttccagattattttgaaaaaatcttactggtattagtaaataaatat
tcaagctgcattctgtgaaaatttcatttaaaaaacaaCAGTATTAAGGT
GACAGCAAGCATTCaaagtttaacatttgaaaattagttcttttaataaa
atgtgtgttatttggtcctaaatttatttggaatttacaaaaatatactt
caaataaggtgataagagaggacagtgagaaaaatttgagacttgaaaag
taattgttcttcaattgaatattatgaacacttttaaggttaaggatttt
gttagcttcgacttagttcttataaatcacggagacacagatagaacatc
cattAACGACAAGAACAATAGCgtcatcattccagccgcggctttcttat
actatggtatTACCATCAATAACAACTATAATTGCCAGGAAAGCTTTTGT
TAAAGCCTTGGAGCTATCACGAAAGAATACGGTTAGGTTCTAGCGCTTTC
GTCCTAAGATAAGCCTAAAGTAAGTTTTAATCTTttggtacacgttttta
tatAGGAACAAACAAGTCTTCGATGACCAAAAAAATAAGGtcattttaag
aacttttttagtcttgaaagatttttgatgttcttataacaaTGACGTAC
ATTTTTCTTGACATTGAGCTTGTCCTTGCTTTTCTTTTCATGCAGGTTGA
AGAAGGATTTACCAATCAGCTCGAACACAATCAAGTTGAATTCCCAATAC
TTCACATTCAGTCAAGAATCGCAACAAAGTGAAGCCTCCATGGCTGCAAT
GAAGTCATTCGTCAGTGGAGAAACCAAATTCTTAGGTGACACCATTGGTG
GGAAAGTCTCTGCCGCTGTTCAACATCAAATGACCAAACAAAGAGAGCTA
CATGAAATCAGTGGTACTTTGGTCGTCACAGCAACCTGTACTCACGCTAA
TGCTGCCATATTTGCTCCATTCGTAATAGATGCAGACAAGGCAGTCCATG
CTTGGAACGATACGTTCTCAAATAAGATAAGTATGCTGACagaagaagaa
atgaaaaagCTGGCCAAAGAAACTGGTGAATCTGACAAACTTCATTTGGT
GTCAGGTGCTACTTATGGATCTTGTTTCGTTGGTATGGTTCACACCAAGA
AAACTGAATCTAACGAGGATACCCAACGCATGTTGTCCACTGCTCAATCC
ATGTCTGCCAATTTCGATATTGGAGCCTTCTTTGCCAGCTACTCTGGTGG
GTTTGGTGTAGACTCCAGCTTCTCTAATGATCTGAAAGCTCTTTTGAGTA
GCCAGATGGTGTCTTCACATGTCAGCTTGGTTTGTGAAGGTTGTATCCCT
ACCATCACCAGTAATAAAGTGGAACTTGGTGTCAAAGCGTTTGCTGACTT
TGATCCAGCTCAGACCATGGAGAAACTGGCAACTCTCAATACTCAAACCA
ACAAAGCCAATGAAACAGTGAGCAGTGCTGCAGACAAGGCTCGCAAAGGA
AAAGAAGTCACCGAGTTGCGTGGCAACGAGATCAAAAACACAATGGCATC
ATTAAGCAAGATTGATGAAGGCAAGGATAGCGTGCTGAATGTCAACTCGC
TGATGTCTGGATTGGAAGATTACGTCACCCAAGCCAAGGAAGCCAAGACC
GGTGTACCAATCAATTTCTTCATCAAAAGTTTGACCAGAGCTGACATTGC
CAAATTATGGCTTGACAAATATGCCAGCAAAGTGCCTGAAAAAAAAGCCG
CGTCCAAACCAAATCCATCAGGAGAGAAACCAAAGCCAGAGAAAGAGGCA
GCTGACCCAATGGCTGGACGAGTAGAAGAAAATCTTGAAAGTGTGGGTCA
ATTCTCAAAAAGTTGGGACTTTCAGTGACACTATTGACGTATTGTGCAAT
TCTTAACGTCCATTGCATTGACAGTATCTGTACCGGAGTCTAAAAAAACA
ATGTACGGGGAAAAGGAATAGtgaaaaatacatttatttataGATTTGTC
AACGGTATTTTATGTTTTGAGAAGTAGTATACCTTATAGTAAACAAATTa
ctttaatttttgaatttgaaaattggctttaaccttctgaaaaaaaagtt
ttggtccttattttcctttcaaaacctttttttgttttaagtaAGTGAAA
TATACGGACGACTAGCATAGTTTTGAAGCAGCCTTTAAACTACACTCCTA
agtgatatttttatttgaaaacaaaaggtCATAGCTTAACAAAAAGGTCA
AATCTTATATcaattttgtaagtattttctAATGAGGAAATACCTACCTA
TGACTAATTTATCAAAAGTTCTGCTGATACAATATCAATATTTTGCGGTT
TTAATATTTCTATGCTGTATGTAAGGATAGAcatttacaaaaatgatttg
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039696XLOC_039696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063347-exon-scaffold_386-1491911889:58963..59047TCONS_00063347-exon-scaffold_386-1491911889:58963..59047Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1510915933:58963..59047TCONS_00063347-exon-scaffold_386-1510915933:58963..59047Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1575043694:58963..59047TCONS_00063347-exon-scaffold_386-1575043694:58963..59047Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1491911889:60052..60145TCONS_00063347-exon-scaffold_386-1491911889:60052..60145Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1510915933:60052..60145TCONS_00063347-exon-scaffold_386-1510915933:60052..60145Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1575043694:60052..60145TCONS_00063347-exon-scaffold_386-1575043694:60052..60145Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1491911889:60738..61039TCONS_00063347-exon-scaffold_386-1491911889:60738..61039Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1510915933:60738..61039TCONS_00063347-exon-scaffold_386-1510915933:60738..61039Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1575043694:60738..61039TCONS_00063347-exon-scaffold_386-1575043694:60738..61039Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1491911889:62308..64014TCONS_00063347-exon-scaffold_386-1491911889:62308..64014Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1510915933:62308..64014TCONS_00063347-exon-scaffold_386-1510915933:62308..64014Clytia hemisphaericaexon
TCONS_00063347-exon-scaffold_386-1575043694:62308..64014TCONS_00063347-exon-scaffold_386-1575043694:62308..64014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:58963..64014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
230.042	241.554	282.766	225.949	40.7889	41.6699	546.451	567.91	196.413	263.623	314.985	113.646	0	0.0247638	0.0305388	0.0655456	35.5792	41.4963	0.609821	0.0199417	369.548	382.465	257.361	636.757	346.822	137.819	2.66744	5.45671	13.6504	17.6278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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