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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063347 ID=TCONS_00063347|Name=TCONS_00063347|organism=Clytia hemisphaerica|type=transcript|length=2188bp
GGCCGCCACCATCAAGCAAAATATTGTAACTGATGAAAATGTTCACCATG
TTCACTGTTATGGAATTCTGAAACAGAAAGAAAGAACCTGAAATTTATTA
GTTCAAGATGGCTGCCAGTATAATTCCATTTGATCCAACCATCACCCTTG
GAAATGTTGTCAATCCATTGAAATTCAAGGAACTCGAAGCAATTGGTAAA
TTGCAAATGGAAATTGACACAAAACAAGATCAACTAAATGGTCTTCTGGC
TGGTAAAAGCAGTTTAGATATGATCATCCAAGAAGTCAAAGCCATGAAAG
TTGACCTTAGTGAAGCTGAGCTGAAAGATGCCTCCAAAGCGATGGATCAA
GAGATTAAGAAAGTTATGAAGGAATACGCTTTGGTTCAAATGGGAAACTT
ACCAAAGATTCAAACACATAAAGCTAAGATTGCCACCATTGCAGATCACG
TCGAATCACCCATGGATTACAACAAATCATTGTTGAAGAAGGATTTACCA
ATCAGCTCGAACACAATCAAGTTGAATTCCCAATACTTCACATTCAGTCA
AGAATCGCAACAAAGTGAAGCCTCCATGGCTGCAATGAAGTCATTCGTCA
GTGGAGAAACCAAATTCTTAGGTGACACCATTGGTGGGAAAGTCTCTGCC
GCTGTTCAACATCAAATGACCAAACAAAGAGAGCTACATGAAATCAGTGG
TACTTTGGTCGTCACAGCAACCTGTACTCACGCTAATGCTGCCATATTTG
CTCCATTCGTAATAGATGCAGACAAGGCAGTCCATGCTTGGAACGATACG
TTCTCAAATAAGATAAGTATGCTGACagaagaagaaatgaaaaagCTGGC
CAAAGAAACTGGTGAATCTGACAAACTTCATTTGGTGTCAGGTGCTACTT
ATGGATCTTGTTTCGTTGGTATGGTTCACACCAAGAAAACTGAATCTAAC
GAGGATACCCAACGCATGTTGTCCACTGCTCAATCCATGTCTGCCAATTT
CGATATTGGAGCCTTCTTTGCCAGCTACTCTGGTGGGTTTGGTGTAGACT
CCAGCTTCTCTAATGATCTGAAAGCTCTTTTGAGTAGCCAGATGGTGTCT
TCACATGTCAGCTTGGTTTGTGAAGGTTGTATCCCTACCATCACCAGTAA
TAAAGTGGAACTTGGTGTCAAAGCGTTTGCTGACTTTGATCCAGCTCAGA
CCATGGAGAAACTGGCAACTCTCAATACTCAAACCAACAAAGCCAATGAA
ACAGTGAGCAGTGCTGCAGACAAGGCTCGCAAAGGAAAAGAAGTCACCGA
GTTGCGTGGCAACGAGATCAAAAACACAATGGCATCATTAAGCAAGATTG
ATGAAGGCAAGGATAGCGTGCTGAATGTCAACTCGCTGATGTCTGGATTG
GAAGATTACGTCACCCAAGCCAAGGAAGCCAAGACCGGTGTACCAATCAA
TTTCTTCATCAAAAGTTTGACCAGAGCTGACATTGCCAAATTATGGCTTG
ACAAATATGCCAGCAAAGTGCCTGAAAAAAAAGCCGCGTCCAAACCAAAT
CCATCAGGAGAGAAACCAAAGCCAGAGAAAGAGGCAGCTGACCCAATGGC
TGGACGAGTAGAAGAAAATCTTGAAAGTGTGGGTCAATTCTCAAAAAGTT
GGGACTTTCAGTGACACTATTGACGTATTGTGCAATTCTTAACGTCCATT
GCATTGACAGTATCTGTACCGGAGTCTAAAAAAACAATGTACGGGGAAAA
GGAATAGtgaaaaatacatttatttataGATTTGTCAACGGTATTTTATG
TTTTGAGAAGTAGTATACCTTATAGTAAACAAATTactttaatttttgaa
tttgaaaattggctttaaccttctgaaaaaaaagttttggtccttatttt
cctttcaaaacctttttttgttttaagtaAGTGAAATATACGGACGACTA
GCATAGTTTTGAAGCAGCCTTTAAACTACACTCCTAagtgatatttttat
ttgaaaacaaaaggtCATAGCTTAACAAAAAGGTCAAATCTTATATcaat
tttgtaagtattttctAATGAGGAAATACCTACCTATGACTAATTTATCA
AAAGTTCTGCTGATACAATATCAATATTTTGCGGTTTTAATATTTCTATG
CTGTATGTAAGGATAGAcatttacaaaaatgatttgGA Run BLAST on NCBI transcript from alignment at scaffold_386:58963..64014+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063347 ID=TCONS_00063347|Name=TCONS_00063347|organism=Clytia hemisphaerica|type=transcript|length=5052bp|location=Sequence derived from alignment at scaffold_386:58963..64014+ (Clytia hemisphaerica)
GGCCGCCACCATCAAGCAAAATATTGTAACTGATGAAAATGTTCACCATG
TTCACTGTTATGGAATTCTGAAACAGAAAGAAAGAGCAAGTTTTTCATAA
GAGTACACGTTTTTTTTATATAAGAACATCCAAAAAATTTTAAGCCTTCG
GATGTTCTTAACTTTTTGAGTTTTGAGCCTAAAAATGTTCTTAATTTCAC
CATTTTGTGAGTATTTTTATGCCATTCTCTAACAAATTGGATGTTTTAGA
GTCAGCAATGCCTTAAAATGTTGGGATGAGCTGGAGTTTTTACAAAATAC
TTCACTAATTGTTCATTTAAAGTGATAGAGATGACGCGTTCTTTATAAAA
AGTAATAAGATTCTTTTATTACATCTTAACGACCAACCAAATCAAAATGT
TCTTAACTTGTTCTTAAAATTTTGGCCATCGAAGCCTTATGTTCTCATAT
AGTTTGTTCTTATAAATGGACGTGTATTCAATGTTCTTAACTTCTTAATT
TGTTGAGTTTTATGCCTAAATATGTTCTTAACGTTTGTTTGTATTTTCAC
TATTTTTACGGTTTTTTGTCCATTTTCAAAAAATTAGGTGTTTTAGGGTG
GTCCACAAAGCCTTACAATGCTCTTAGCTTGTTCTTAATATTTTGACCAT
CGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAGTGTTTTCA
GCTGAGGTAAAATAACGGCTTGCCTCTGACCATGTTCATTTTTCAGAAAA
TATCTGACGGGACCGTGAAATTACTAAATAAAAAACCACTTTCAGGGTTG
GAATTAGAAATAATTTTAGATTATATTTAATTTGAGTTTTTTGACTACAT
AATCTATCAGGGTCAAATTTCGTGTGTTCAAATATTGATAAATAATTACA
TTTGaggctttattttttgaaactgCCGTTGTACGttcccgtcggccgtc
aaggttgGTGCTACCCGGTTTATTAGATTGAAAAGTAGTAAAGTCTCGGT
AAgaagtaaatttttcttttgattgcCGTTACAGTTTTAGTCGGGATTTT
CGAAATTGCAACTATAAATTCTATAAATTTTATTTCTAGACCTGAAATTT
ATTAGTTCAAGATGGCTGCCAGTATAATTCCATTTGATCCAACCATCACC
CTTGGAAATGTTGTCAATCCATTGAAATTCAAGGTACattgttctctaaa
aagtgCTAGCTATTTACAGCATTCAATAAAAACCAGGAGTGTTGCTGTTG
CTGTTTTGAAataaccagtaaatttttgtagAGTGTTGGCTGCTCTCATT
TTCAGCATTTAGAACCACAAGCTGTTTTTATCCTGTTcgtatttttttag
aaaaattgaggTACTTGCAGGCTTACTACGCTGTTTAAATTGTTTTTCCT
CTGATTGTCTcgaaattcattcattcaattCATGGCATCAACTGTATtaa
gttgttcttaattttcaattttttgatatcTTGATTCTCGTTCTTACGAA
attgttttaataaaaaaagattcGGTAGCCAagaaaaaatggggaaaaac
cCTTGCAGATGACTCACTCCGCTCACTCCACTCCTCACTCACTCACTCCA
CCCACTCTTCACTCTGAAGATGATAGCTGAAAGAAGGTTTTTAACGAAGA
CTTTGATTATTTTACTAAATTCTTTTTCCTAGTGGGAGCTTCTTAGTTTC
TCAATATTGATACGTGAGATTTTAAGAacgtaaaatgaaaatttcaaaat
cagttttttcctttttataacGAAGGAACTCGAAGCAATTGGTAAATTGC
AAATGGAAATTGACACAAAACAAGATCAACTAAATGGTCTTCTGGCTGGT
AAAAGCAGTTTAGATATGATCATCCAAGAAGTCAAAGCCATGAAAGTTGA
CCTTAGTGAAGCTGAGCTGAAAGATGCCTCCAAAGCGATGGATCAAGAGA
TTAAGAAAGTTATGAAGGAATACGCTTTGGTTCAAATGGGAAACTTACCA
AAGATTCAAACACATAAAGCTAAGATTGCCACCATTGCAGATCACGTCGA
ATCACCCATGGATTACAACAAATCATTGTAGGTTTACCTTAGTTGAATGA
ATTTtcacttcaatatttttttacgaAACGTCATTCTCTTTTATTTAGCC
AAAATTCAGATTTAATAATTTAAATTATTAGGGTACAAACTTCAGTTTTT
TACTTTACGAATCTGCAACAATCAAATTTTGGTACACCTGTTTTAACTGA
TTAGTattaccatagtataagaaagccgcggctggaatgagtacagctga
atttctgttgttctatctatgtcgtaagaacgaatttttttatggtGCAG
TGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTGACAACTTCcattgtcaatttaatttgacttttaac
aaactccctcgttagacgtaattttgctcataaacgcaaatctcttgata
attcacgcattcataatcaaagtaaaagaaaagactcttgatttaaaagt
actagaacgtcagaatgtcagtgctttaagaaaattgagtgcctcgaaat
gccttccagattattttgaaaaaatcttactggtattagtaaataaatat
tcaagctgcattctgtgaaaatttcatttaaaaaacaaCAGTATTAAGGT
GACAGCAAGCATTCaaagtttaacatttgaaaattagttcttttaataaa
atgtgtgttatttggtcctaaatttatttggaatttacaaaaatatactt
caaataaggtgataagagaggacagtgagaaaaatttgagacttgaaaag
taattgttcttcaattgaatattatgaacacttttaaggttaaggatttt
gttagcttcgacttagttcttataaatcacggagacacagatagaacatc
cattAACGACAAGAACAATAGCgtcatcattccagccgcggctttcttat
actatggtatTACCATCAATAACAACTATAATTGCCAGGAAAGCTTTTGT
TAAAGCCTTGGAGCTATCACGAAAGAATACGGTTAGGTTCTAGCGCTTTC
GTCCTAAGATAAGCCTAAAGTAAGTTTTAATCTTttggtacacgttttta
tatAGGAACAAACAAGTCTTCGATGACCAAAAAAATAAGGtcattttaag
aacttttttagtcttgaaagatttttgatgttcttataacaaTGACGTAC
ATTTTTCTTGACATTGAGCTTGTCCTTGCTTTTCTTTTCATGCAGGTTGA
AGAAGGATTTACCAATCAGCTCGAACACAATCAAGTTGAATTCCCAATAC
TTCACATTCAGTCAAGAATCGCAACAAAGTGAAGCCTCCATGGCTGCAAT
GAAGTCATTCGTCAGTGGAGAAACCAAATTCTTAGGTGACACCATTGGTG
GGAAAGTCTCTGCCGCTGTTCAACATCAAATGACCAAACAAAGAGAGCTA
CATGAAATCAGTGGTACTTTGGTCGTCACAGCAACCTGTACTCACGCTAA
TGCTGCCATATTTGCTCCATTCGTAATAGATGCAGACAAGGCAGTCCATG
CTTGGAACGATACGTTCTCAAATAAGATAAGTATGCTGACagaagaagaa
atgaaaaagCTGGCCAAAGAAACTGGTGAATCTGACAAACTTCATTTGGT
GTCAGGTGCTACTTATGGATCTTGTTTCGTTGGTATGGTTCACACCAAGA
AAACTGAATCTAACGAGGATACCCAACGCATGTTGTCCACTGCTCAATCC
ATGTCTGCCAATTTCGATATTGGAGCCTTCTTTGCCAGCTACTCTGGTGG
GTTTGGTGTAGACTCCAGCTTCTCTAATGATCTGAAAGCTCTTTTGAGTA
GCCAGATGGTGTCTTCACATGTCAGCTTGGTTTGTGAAGGTTGTATCCCT
ACCATCACCAGTAATAAAGTGGAACTTGGTGTCAAAGCGTTTGCTGACTT
TGATCCAGCTCAGACCATGGAGAAACTGGCAACTCTCAATACTCAAACCA
ACAAAGCCAATGAAACAGTGAGCAGTGCTGCAGACAAGGCTCGCAAAGGA
AAAGAAGTCACCGAGTTGCGTGGCAACGAGATCAAAAACACAATGGCATC
ATTAAGCAAGATTGATGAAGGCAAGGATAGCGTGCTGAATGTCAACTCGC
TGATGTCTGGATTGGAAGATTACGTCACCCAAGCCAAGGAAGCCAAGACC
GGTGTACCAATCAATTTCTTCATCAAAAGTTTGACCAGAGCTGACATTGC
CAAATTATGGCTTGACAAATATGCCAGCAAAGTGCCTGAAAAAAAAGCCG
CGTCCAAACCAAATCCATCAGGAGAGAAACCAAAGCCAGAGAAAGAGGCA
GCTGACCCAATGGCTGGACGAGTAGAAGAAAATCTTGAAAGTGTGGGTCA
ATTCTCAAAAAGTTGGGACTTTCAGTGACACTATTGACGTATTGTGCAAT
TCTTAACGTCCATTGCATTGACAGTATCTGTACCGGAGTCTAAAAAAACA
ATGTACGGGGAAAAGGAATAGtgaaaaatacatttatttataGATTTGTC
AACGGTATTTTATGTTTTGAGAAGTAGTATACCTTATAGTAAACAAATTa
ctttaatttttgaatttgaaaattggctttaaccttctgaaaaaaaagtt
ttggtccttattttcctttcaaaacctttttttgttttaagtaAGTGAAA
TATACGGACGACTAGCATAGTTTTGAAGCAGCCTTTAAACTACACTCCTA
agtgatatttttatttgaaaacaaaaggtCATAGCTTAACAAAAAGGTCA
AATCTTATATcaattttgtaagtattttctAATGAGGAAATACCTACCTA
TGACTAATTTATCAAAAGTTCTGCTGATACAATATCAATATTTTGCGGTT
TTAATATTTCTATGCTGTATGTAAGGATAGAcatttacaaaaatgatttg
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063347-exon-scaffold_386-1491911889:58963..59047 | TCONS_00063347-exon-scaffold_386-1491911889:58963..59047 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1510915933:58963..59047 | TCONS_00063347-exon-scaffold_386-1510915933:58963..59047 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1575043694:58963..59047 | TCONS_00063347-exon-scaffold_386-1575043694:58963..59047 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1491911889:60052..60145 | TCONS_00063347-exon-scaffold_386-1491911889:60052..60145 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1510915933:60052..60145 | TCONS_00063347-exon-scaffold_386-1510915933:60052..60145 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1575043694:60052..60145 | TCONS_00063347-exon-scaffold_386-1575043694:60052..60145 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1491911889:60738..61039 | TCONS_00063347-exon-scaffold_386-1491911889:60738..61039 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1510915933:60738..61039 | TCONS_00063347-exon-scaffold_386-1510915933:60738..61039 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1575043694:60738..61039 | TCONS_00063347-exon-scaffold_386-1575043694:60738..61039 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1491911889:62308..64014 | TCONS_00063347-exon-scaffold_386-1491911889:62308..64014 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1510915933:62308..64014 | TCONS_00063347-exon-scaffold_386-1510915933:62308..64014 | Clytia hemisphaerica | exon |
| TCONS_00063347-exon-scaffold_386-1575043694:62308..64014 | TCONS_00063347-exon-scaffold_386-1575043694:62308..64014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_386 | supercontig | scaffold_386:58963..64014 + |
Blast
The following BLAST results are available for this feature:
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