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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063423 ID=TCONS_00063423|Name=TCONS_00063423|organism=Clytia hemisphaerica|type=transcript|length=2945bp
NNCAAACACGTGTTATCACACAGCAGTAGCCGCCTTACAATAACAAGGAA
TCAGCTAAAGATCTCTAATTTGTGTATTTACAGGACTAAGGGTAAGTATT
CTAATAGGTGAAGTTACATTCGAAAGTCTGAAGAGGGCATTTCctatttt
tgaagcatttttgtCATGTACTCAAAACATTTGATATTTTCCAAAAGATT
AAAATTTTATGGATGATTGAATGTTTAAAGGTTAGGTCATTAGACTCATT
TCCACTAATACCTGATAATACTTCTACTGTATGTGTAATTTCTCATTTTG
TCCTGTAAATACACAAATCTTCGACAGACAACGCCGACTAAAGAAAACAC
CAAGAAAGATCAACCAGTCGATCGAACAGCACCAACGACCATCATGATGG
ATTTCAGACTATACACTTATTTGACCCATCCATACATTTTTACTATCACA
GACTTTAATTTGTTGTATACTACCTACCATAATACCATTGCGTATGATAT
CGTCTGTNGAACCTAAGAGTACTCAAAACATTTGATATTTTCCAAAAGAT
TAAAATTTTATGGATGATTGAATGTTTAAAGGTTAGGTCATTGGACTCAT
TTCCACTAATACCTGATAATACTTCTACTGTATGTGTAATTTCTCATTTT
GTCCTGTAAATACACAAATCTTCGACAGACAACACCGACTAAAGAAAACA
CCAAGAAAGATCAACCAGTCGATCGAACAGCACCAACGACCATCATGATG
GATTTCAGACTATACCCTTATTTGACCCATCCATACATTTTTACTATCAC
AGACTTTAATTTGTTGTATACTACCTACCATAATACCATTGCGTATGATA
TCGTCTGTCAGTGTAATAAACATGGCACTATCTCAGACGAGCCACTGCTG
GAATAGGGATCCAATTCCTTTATCCAATGAAAACTCGACCCAATTACTTC
TTATCAAATCATCGAAATCAAAGAGTACCCtggtattttagcatttttct
cCGAATACCATTAACAGCACTCTTTCGGACGTTGCACAATAAGTTCCTAC
ACCCAATATCCTTAACCCTAAACTTCTCTCTTCTATCTAGTCCAAGAATG
AGTACGGAGTTGTTTATTGGNACTGGAATAGGAATCCAATTCCTTTATCC
AAAGAAAACTCGACCCAATTACTTCTTATCAAATCATCGAAATCAAAGAT
AACCCtggtattttagcatttttctcCGAATACCATTAACAGCACTCTTT
CGAACGTTGCACAATAAGTTCCTACACCCAATATCCTTAACCCTAAACTT
CTCTCTTCTATCTAGTCCAAGAATGAGTACGGAGTTGTTTATTGGAAATC
TCAACCCTAATACCCGCACTCGTGATTTGGAGAATGTCTTCGGAAGATAC
GGAAAAATTCTTCGATgtgatttaaagaaaaatttcggATTCATTCAATA
TGATGAACGACGTGATGCAGAAACAGCGATGATGAAAGAAAATGACCAAC
GCCTTATGGGATCTGTGATGACTGTTGAGTGGGCCAAAGGGTCTGGTCCT
CGCCAAGGAGGCGGTGGCGGTGGTGGCCGGCCTGGCGGAGGTAATCCAAG
GTATCGTTCGCCACCAAAAGGAGGAATGCGTGATCGATCGCCTTACGGTG
GCGGTAGAGCTCGTTCTCCACGTGGTGGCTTTGATAGAGGAGACAGAGAT
GATCGTTTAGGTGGTTATGGTGGTGGGCGTCGAGGTGGCGGCGGGCGTGA
TTTTGATGACCGTGGTCCACCACGTGACCGACAGAGAGATCGTGGAGATC
GATTCAGCGACGCACGAGGACCACCAGGAGGAGATCGCCGAGGACCGCCT
CGTGATCGACAACGTGGAGGAGGAGATCGAATGGGGCGTAGAGACAGTTT
CGGTAGCGATCGCCGTAGTTTTGGCGGCGGACCAAGGCGCTTTTAAGTAA
ACAAAGTAGCTAGTGACAAATTTATTGGAGCTTCACCGTTGAATTGAAGG
GATCCTATATTTGCTTCATGACAAAACTCGTAAAGCTGTGTTGCCGTGAA
GAATTTTCGCACTTCATACCTTATGTGAATGGGATAACTTAGATCTCTAT
AGCAATAGAACAATAGAGGGTTTGTATTTATTTGAAACAAACTTAACGAA
CTAAATTGATTGAAAGAGCTTAACAGAGACGTCTAGATTTTTattgacat
ttttaattttgccaTTTTGGAAAATGTAAATAATATTGAGCGATCTTAAC
ATAAATAACAAAAATCCTTTCTTGTTTTGTGTTCTTCGCAAACTTCAGCT
CGTTTGAAATGGAAAACATCAAATAAGGTCCGCAACAGTCCGCAAtgtag
tagagggcattttgtaaaatcgctcgactgttttgttagaagcacttgtt
atacatttttggaaagctaaggggtaggggaatcaaaattactatgtttc
caattttttttcggacactttggtgtgattttcagacaaatatgacggtc
tcaggaaaaaatcatagggttaaaaattaatgaaaattttagctcgagaa
aacggagacctgttgtatatttttggaaagctcttataaaattaggatta
gagatatattgcaagtataggtgatttcaatacctaactcgagatattga
gcttcaaaaagcgcaaaaactggacaaaatagctgtttctggctgaaaaa
cacggttttcaagagttaatatctcgagttatgtacagaaatcacctata
cttgcaatatatctctaatcttaattttttacgagctttccaaaaatata
caacaggtctccgttttctcgagctaaaattttcattaatttttaaccgt
atgatttttgcctgagaccgtcatatttgtccaaaaatcacaccaaagtg
tccgaaaaaaaattggaaacatagtaatttcgattcccctacccc Run BLAST on NCBI protein sequence of TCONS_00063423-protein >TCONS_00063423-protein ID=TCONS_00063423-protein|Name=TCONS_00063423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MSTELFIGNLNPNTRTRDLENVFGRYGKILRCDLKKNFGFIQYDERRDAE
TAMMKENDQRLMGSVMTVEWAKGSGPRQGGGGGGGRPGGGNPRYRSPPKG
GMRDRSPYGGGRARSPRGGFDRGDRDDRLGGYGGGRRGGGGRDFDDRGPP
RDRQRDRGDRFSDARGPPGGDRRGPPRDRQRGGGDRMGRRDSFGSDRRSF
GGGPRRF Run BLAST on NCBI transcript from alignment at scaffold_389:82182..85295+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063423 ID=TCONS_00063423|Name=TCONS_00063423|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at scaffold_389:82182..85295+ (Clytia hemisphaerica)
NNCAAACACGTGTTATCACACAGCAGTAGCCGCCTTACAATAACAAGGAA
TCAGCTAAAGATCTCTAATTTGTGTATTTACAGGACTAAGGGTAAGTATT
CTAATAGGTGAAGTTACATTCGAAAGTCTGAAGAGGGCATTTCctatttt
tgaagcatttttgtCATGTACTCAAAACATTTGATATTTTCCAAAAGATT
AAAATTTTATGGATGATTGAATGTTTAAAGGTTAGGTCATTAGACTCATT
TCCACTAATACCTGATAATACTTCTACTGTATGTGTAATTTCTCATTTTG
TCCTGTAAATACACAAATCTTCGACAGACAACGCCGACTAAAGAAAACAC
CAAGAAAGATCAACCAGTCGATCGAACAGCACCAACGACCATCATGATGG
ATTTCAGACTATACACTTATTTGACCCATCCATACATTTTTACTATCACA
GACTTTAATTTGTTGTATACTACCTACCATAATACCATTGCGTATGATAT
CGTCTGTNGAACCTAAGAGTACTCAAAACATTTGATATTTTCCAAAAGAT
TAAAATTTTATGGATGATTGAATGTTTAAAGGTTAGGTCATTGGACTCAT
TTCCACTAATACCTGATAATACTTCTACTGTATGTGTAATTTCTCATTTT
GTCCTGTAAATACACAAATCTTCGACAGACAACACCGACTAAAGAAAACA
CCAAGAAAGATCAACCAGTCGATCGAACAGCACCAACGACCATCATGATG
GATTTCAGACTATACCCTTATTTGACCCATCCATACATTTTTACTATCAC
AGACTTTAATTTGTTGTATACTACCTACCATAATACCATTGCGTATGATA
TCGTCTGTCAGTGTAATAAACATGGCACTATCTCAGACGAGCCACTGCTG
GAATAGGGATCCAATTCCTTTATCCAATGAAAACTCGACCCAATTACTTC
TTATCAAATCATCGAAATCAAAGAGTACCCtggtattttagcatttttct
cCGAATACCATTAACAGCACTCTTTCGGACGTTGCACAATAAGTTCCTAC
ACCCAATATCCTTAACCCTAAACTTCTCTCTTCTATCTAGTCCAAGAATG
AGTACGGAGTTGTTTATTGGNACTGGAATAGGAATCCAATTCCTTTATCC
AAAGAAAACTCGACCCAATTACTTCTTATCAAATCATCGAAATCAAAGAT
AACCCtggtattttagcatttttctcCGAATACCATTAACAGCACTCTTT
CGAACGTTGCACAATAAGTTCCTACACCCAATATCCTTAACCCTAAACTT
CTCTCTTCTATCTAGTCCAAGAATGAGTACGGAGTTGTTTATTGGAAATC
TCAACCCTAATACCCGCACTCGTGATTTGGAGAATGTCTTCGGAAGATAC
GGAAAAATTCTTCGATgtgatttaaagaaaaatttcggATTCATTCAATA
TGATGAACGACGTGATGCAGAAACAGCGATGATGAAAGAAAATGACCAAC
GCCTTATGGGATCTGTGATGACTGTTGAGTGGGCCAAAGGGTCTGGTCCT
CGCCAAGGAGGCGGTGGCGGTGGTGGCCGGCCTGGCGGAGGTAATCCAAG
GTATCGTTCGCCACCAAAAGGAGGAATGCGTGATCGATCGCCTTACGGTG
GCGGTAGAGCTCGTTCTCCACGTGGTGGCTTTGATAGAGGAGACAGAGAT
GATCGTTTAGGTGGTTATGGTGGTGGGCGTCGAGGTGGCGGNCGGCCGGC
CTGGCGGAGGTAATCCAAGGTATCGTTCGCCACCAAAAGGAGGAATGCGT
GATCGATCACCTTACGGCGGCGGTAGAGCTCGTTCTCCACGTGGTGGCTT
TGATAGAGGAGACAGAGATGATCGTTTAGGTGGTTATGGTGGTGGGCGTC
GAGGTGGCGGCGGGCGTGATTTTGATGACCGTGGTCCACCACGTGACCGA
CAGAGAGATCGTGGAGATCGATTCAGCGACGCACGAGGACCACCAGGAGG
AGATCGCCGAGGACCGCCTCGTGATCGACAACGTGGAGGAGGAGATCGAA
TGGGGCGTAGAGACAGTTTCGGTAGCGATCGCCGTAGTTTTGGCGGCGGA
CCAAGGCGCTTTTAAGTAAACAAAGTAGCTAGTGACAAATTTATTGGAGC
TTCACCGTTGAATTGAAGGGATCCTATATTTGCTTCATGACAAAACTCGT
AAAGCTGTGTTGCCGTGAAGAATTTTCGCACTTCATACCTTATGTGAATG
GGATAACTTAGATCTCTATAGCAATAGAACAATAGAGGGTTTGTATTTAT
TTGAAACAAACTTAACGAACTAAATTGATTGAAAGAGCTTAACAGAGACG
TCTAGATTTTTattgacatttttaattttgccaTTTTGGAAAATGTAAAT
AATATTGAGCGATCTTAACATAAATAACAAAAATCCTTTCTTGTTTTGTG
TTCTTCGCAAACTTCAGCTCGTTTGAAATGGAAAACATCAAATAAGGTCC
GCAACAGTCCGCAAtgtagtagagggcattttgtaaaatcgctcgactgt
tttgttagaagcacttgttatacatttttggaaagctaaggggtagggga
atcaaaattactatgtttccaattttttttcggacactttggtgtgattt
tcagacaaatatgacggtctcaggaaaaaatcatagggttaaaaattaat
gaaaattttagctcgagaaaacggagacctgttgtatatttttggaaagc
tcttataaaattaggattagagatatattgcaagtataggtgatttcaat
acctaactcgagatattgagcttcaaaaagcgcaaaaactggacaaaata
gctgtttctggctgaaaaacacggttttcaagagttaatatctcgagtta
tgtacagaaatcacctatacttgcaatatatctctaatcttaatttttta
cgagctttccaaaaatatacaacaggtctccgttttctcgagctaaaatt
ttcattaatttttaaccgtatgatttttgcctgagaccgtcatatttgtc
caaaaatcacaccaaagtgtccgaaaaaaaattggaaacatagtaatttc
gattcccctacccc Coding sequence (CDS) from alignment at scaffold_389:82182..85295+ >TCONS_00063423 ID=TCONS_00063423|Name=TCONS_00063423|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_389:82182..85295+ (Clytia hemisphaerica)
ATGAGTACGGAGTTGTTTATTGGAAATCTCAACCCTAATACCCGCACTCG
TGATTTGGAGAATGTCTTCGGAAGATACGGAAAAATTCTTCGATgtgatt
taaagaaaaatttcggATTCATTCAATATGATGAACGACGTGATGCAGAA
ACAGCGATGATGAAAGAAAATGACCAACGCCTTATGGGATCTGTGATGAC
TGTTGAGTGGGCCAAAGGGTCTGGTCCTCGCCAAGGAGGCGGTGGCGGTG
GTGGCCGGCCTGGCGGAGGTAATCCAAGGTATCGTTCGCCACCAAAAGGA
GGAATGCGTGATCGATCGCCTTACGGTGGCGGTAGAGCTCGTTCTCCACG
TGGTGGCTTTGATAGAGGAGACAGAGATGATCGTTTAGGTGGTTATGGTG
GTGGGCGTCGAGGTGGCGGCGGGCGTGATTTTGATGACCGTGGTCCACCA
CGTGACCGACAGAGAGATCGTGGAGATCGATTCAGCGACGCACGAGGACC
ACCAGGAGGAGATCGCCGAGGACCGCCTCGTGATCGACAACGTGGAGGAG
GAGATCGAATGGGGCGTAGAGACAGTTTCGGTAGCGATCGCCGTAGTTTT
GGCGGCGGACCAAGGCGCTTTTAAATGAGTACGGAGTTGTTTATTGGAAA
TCTCAACCCTAATACCCGCACTCGTGATTTGGAGAATGTCTTCGGAAGAT
ACGGAAAAATTCTTCGATgtgatttaaagaaaaatttcggATTCATTCAA
TATGATGAACGACGTGATGCAGAAACAGCGATGATGAAAGAAAATGACCA
ACGCCTTATGGGATCTGTGATGACTGTTGAGTGGGCCAAAGGGTCTGGTC
CTCGCCAAGGAGGCGGTGGCGGTGGTGGCCGGCCTGGCGGAGGTAATCCA
AGGTATCGTTCGCCACCAAAAGGAGGAATGCGTGATCGATCGCCTTACGG
TGGCGGTAGAGCTCGTTCTCCACGTGGTGGCTTTGATAGAGGAGACAGAG
ATGATCGTTTAGGTGGTTATGGTGGTGGGCGTCGAGGTGGCGGCGGGCGT
GATTTTGATGACCGTGGTCCACCACGTGACCGACAGAGAGATCGTGGAGA
TCGATTCAGCGACGCACGAGGACCACCAGGAGGAGATCGCCGAGGACCGC
CTCGTGATCGACAACGTGGAGGAGGAGATCGAATGGGGCGTAGAGACAGT
TTCGGTAGCGATCGCCGTAGTTTTGGCGGCGGACCAAGGCGCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063423-exon-scaffold_389-1491911889:82182..83891 | TCONS_00063423-exon-scaffold_389-1491911889:82182..83891 | Clytia hemisphaerica | exon |
| TCONS_00063423-exon-scaffold_389-1510915933:82182..83891 | TCONS_00063423-exon-scaffold_389-1510915933:82182..83891 | Clytia hemisphaerica | exon |
| TCONS_00063423-exon-scaffold_389-1575043694:82182..83891 | TCONS_00063423-exon-scaffold_389-1575043694:82182..83891 | Clytia hemisphaerica | exon |
| TCONS_00063423-exon-scaffold_389-1491911889:84061..85295 | TCONS_00063423-exon-scaffold_389-1491911889:84061..85295 | Clytia hemisphaerica | exon |
| TCONS_00063423-exon-scaffold_389-1510915933:84061..85295 | TCONS_00063423-exon-scaffold_389-1510915933:84061..85295 | Clytia hemisphaerica | exon |
| TCONS_00063423-exon-scaffold_389-1575043694:84061..85295 | TCONS_00063423-exon-scaffold_389-1575043694:84061..85295 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_389 | supercontig | scaffold_389:82182..85295 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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