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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063886 ID=TCONS_00063886|Name=TCONS_00063886|organism=Clytia hemisphaerica|type=transcript|length=1267bp
CTTCTTTCTCATGGAAAGAATGGAGAAGGAGATGTAACACATTATTAAGC
TATCAGCAGGATTCAAACCTAGAACAAAATCTTGAAGCacgaaaatgaaa
atgccattTACAAACCATGTTTCACCTACAAAAAGTTTGCTTTAAATTCA
ATAATTATTAACATGTAAATTATACAAATTTAATAATTATGGTTTAGCTA
AATTTGTGGTCGTTTTTACAGTGGGAACATTATTTCAAATGTAAAGAAAC
GTTGGAAATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGT
TTGAGACACACGgatttaaaagattAGAAAGATGTTATGATCCCAAACAA
CGTTGGCGCTGTAAAATCAGAGTGAAGTTCTATAAAAACTTTTGCAGTGA
TGAACTAAGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTAAAATAG
GACCAGTCACACCCAAACGAAAATGTGGCATTTCAAATGCTTTTCAAGGG
CGTGTTGTGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTGGATAGG
TTCGCTTCAATTTCGTAAGCCTGGAACCAAgaaacacatttgtggagcca
CTCTTATTTATCCAAGATggGTTTTGTCAGCTGCACATTGTTTTTCGTTC
GAAAAAGCCAATATTGATGATGTTCTACCATTACTTCGTGTCGAGTTTGG
AATCCATaaccaaaacaaaacagagcCTTCGTCTCAAGTCAGAAGAATAT
CAATGCTTATTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAAAACACA
ATATATGGTGATTTAATTTTAATTGAACTTGAAAAGACAGTGATGTTGAA
TGATCGAGTAAATATACCATGCTTGCCAGACAAAGAAGACTACCCAACCA
TTGGACAGAACTGTGTTGTAGCAGGTTGGGGGAGTATAAAATGGCCAAGT
GAAAAGACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCC
AAATCATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACG
GTTTTGGAACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGA
GATTCTGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATT
TGTTGGTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTT
ATGCTCCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCA
CATTTTTAATTCATATG Run BLAST on NCBI protein sequence of TCONS_00063886-protein >TCONS_00063886-protein ID=TCONS_00063886-protein|Name=TCONS_00063886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MYLRSIAIFLVVYWFETHGFKRLERCYDPKQRWRCKIRVKFYKNFCSDEL
RKQTCIKSCGGCKIGPVTPKRKCGISNAFQGRVVNGENAPEGAYPWIGSL
QFRKPGTKKHICGATLIYPRWVLSAAHCFSFEKANIDDVLPLLRVEFGIH
NQNKTEPSSQVRRISMLIQSPDLQVIPEQNTIYGDLILIELEKTVMLNDR
VNIPCLPDKEDYPTIGQNCVVAGWGSIKWPSEKTGGILQQARLPVVGPNH
IGCRNNTEVICVGYGFGTQLSGKHHPNACKGDSGGPLVCQKQSGNWEFVG
VASYVHTLCKYYTAYAPVGKYMSWISSYVPAHF Run BLAST on NCBI transcript from alignment at scaffold_404:467420..469643+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063886 ID=TCONS_00063886|Name=TCONS_00063886|organism=Clytia hemisphaerica|type=transcript|length=2224bp|location=Sequence derived from alignment at scaffold_404:467420..469643+ (Clytia hemisphaerica)
CTTCTTTCTCATGGAAAGAATGGAGAAGGAGATGTAACACATTATTAAGC
TATCAGCAGGATTCAAACCTAGAACAAAATCTTGAAGCacgaaaatgaaa
atgccattTACAAACCATGTTTCACCTACAAAAAGTTTGCTTTAAATTCA
ATAATTATTAACATGTAAATTATACAAATTTAATAATTATGGTTTAGCTA
AATTTGTGGTCGTTTTTACAGTGGGAACATTATTTCAAATGTAAAGAAAC
GTTGGAAATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGT
TTGAGACACACGGTAAATTCAACTTATTGTGAAATTgactgaaaaatatg
aaaaatcgaaataaatccTATATAAATTTCGAAAGTTTATTGAACTTTTA
TCTATCAATCCTTCTTTTGATTCTAGAAATAAAGCTAAGATACTTAGAAA
GCAATAGCACAACGTAGAAAAAACAGGTCGAATTTAATCTAAATAGTAGT
ACACTTCAAAACGGGTTTTCTTCTTATTTTAActcaggatttaaaagatt
AGAAAGATGTTATGATCCCAAACAACGTTGGCGCTGTAAAATCAGAGTGA
AGTTCTATAAAAACTTTTGCAGTGATGAACTAAGAAAGCAAACATGTATC
AAAAGTTGCGGTGGTTGTAAAATAGGACCAGTCACACCCAAACGAAAATG
TGGCATTTCAAATGCTTTTCAAGGGCGTGTTGTGAATGGTGAAAACGCCC
CTGAAGGAGCTTACCCTTGGATAGGTTCGCTTCAATTTCGTAAGCCTGGA
ACCAAgaaacacatttgtggagccaCTCTTATTTATCCAAGATgggtaaa
taaataaatacatgTTAAGACAATTCGTTTAATTCGAAAGTAAAGGAAAA
ATGCCCGATTAAATCCTCTTAATTAAGCTATCACAGCATAGGAAAAACTA
CATTGAGCTCTCATCCCCACTAGGAAAGCACTAAAATTTTGTGAATCCTG
CTCTGTTTTGACCAGGTAACTTAATTTTTATGTATGTGTTTTCTGCCACG
TAGATGATTAGCTTTTGAATCTTCTAGATCCTGATGAACTGAGGTAGACT
GTAAACCAGCACTTTTACCGTGTTCCATTGGGTCAGAATTGCAGAATaat
ccaaatcgcttcagttacTCCACCGTCCTCGAAAGAGCAAATATCACTTA
TTGGTCACTGAGATATAGGTCTGTTAGGAGGGTAATCCGTTATAATATCA
ACCTTTTTCAGGTTTTGTCAGCTGCACATTGTTTTTCGTTCGAAAAAGCC
AATATTGATGATGTTCTACCATTACTTCGTGTCGAGTTTGGAATCCATaa
ccaaaacaaaacagagcCTTCGTCTCAAGTCAGAAGAATATCAATGCTTA
TTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAAAACACAATATATGGT
GATTTAATTTTAATTGAACTTGAAAAGACAGTGATGTTGAATGATCGAGT
AAATATACCATGCTTGCCAGACAAAGAAGACTACCCAACCATTGGACAGA
ACTGTGTTGTAGCAGGTTAGGCAAACTTCATATGACttcgtttttaattt
ttcctttttggcTGAGCAACCTTATAGCATCTTTCTGCATCTTCTACAGC
CAATAGGCTAGAAAATGGACCAATCGTATAACCAACAACTGTTGCTAAGA
TGGTAAATTTGTATAACCTATTATTCAAGTCTTATTCAAATCGAATCTTT
CTGCAAATGAAAATACTTCGAGAAAACTACCTCGTTTAAGAGAATCTCAG
AGAACTAAACGTCAATCTTTCAATGACAAGTTTCAACAACCATTCTGAAA
GTGTAAGAACTTCTTTATTGACTTCAAACAGGTTGGGGGAGTATAAAATG
GCCAAGTGAAAAGACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTG
TTGGGCCAAATCATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTT
GGATACGGTTTTGGAACTCAACTTAGTGGAAAACACCATCCAAATGCATG
CAAAGGAGATTCTGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATT
GGGAATTTGTTGGTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTAC
ACAGCTTATGCTCCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGT
GCCGGCACATTTTTAATTCATATG Coding sequence (CDS) from alignment at scaffold_404:467420..469643+ >TCONS_00063886 ID=TCONS_00063886|Name=TCONS_00063886|organism=Clytia hemisphaerica|type=CDS|length=4008bp|location=Sequence derived from alignment at scaffold_404:467420..469643+ (Clytia hemisphaerica)
ATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTTTGAGAC
ACACGgatttaaaagattAGAAAGATGTTATGATCCCAAACAACGTTGGC
GCTGTAAAATCAGAGTGAAGTTCTATAAAAACTTTTGCAGTGATGAACTA
AGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTAAAATAGGACCAGT
CACACCCAAACGAAAATGTGGCATTTCAAATGCTTTTCAAGGGCGTGTTG
TGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTGGATAGGTTCGCTT
CAATTTCGTAAGCCTGGAACCAAgaaacacatttgtggagccaCTCTTAT
TTATCCAAGATggGTTTTGTCAGCTGCACATTGTTTTTCGTTCGAAAAAG
CCAATATTGATGATGTTCTACCATTACTTCGTGTCGAGTTTGGAATCCAT
aaccaaaacaaaacagagcCTTCGTCTCAAGTCAGAAGAATATCAATGCT
TATTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAAAACACAATATATG
GTGATTTAATTTTAATTGAACTTGAAAAGACAGTGATGTTGAATGATCGA
GTAAATATACCATGCTTGCCAGACAAAGAAGACTACCCAACCATTGGACA
GAACTGTGTTGTAGCAGGTTGGGGGAGTATAAAATGGCCAAGTGAAAAGA
CAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCCAAATCAT
ATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACGGTTTTGG
AACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGAGATTCTG
GCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATTTGTTGGT
GTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTTATGCTCC
CGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCACATTTTT
AAATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTTTGAG
ACACACGgatttaaaagattAGAAAGATGTTATGATCCCAAACAACGTTG
GCGCTGTAAAATCAGAGTGAAGTTCTATAAAAACTTTTGCAGTGATGAAC
TAAGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTAAAATAGGACCA
GTCACACCCAAACGAAAATGTGGCATTTCAAATGCTTTTCAAGGGCGTGT
TGTGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTGGATAGGTTCGC
TTCAATTTCGTAAGCCTGGAACCAAgaaacacatttgtggagccaCTCTT
ATTTATCCAAGATggGTTTTGTCAGCTGCACATTGTTTTTCGTTCGAAAA
AGCCAATATTGATGATGTTCTACCATTACTTCGTGTCGAGTTTGGAATCC
ATaaccaaaacaaaacagagcCTTCGTCTCAAGTCAGAAGAATATCAATG
CTTATTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAAAACACAATATA
TGGTGATTTAATTTTAATTGAACTTGAAAAGACAGTGATGTTGAATGATC
GAGTAAATATACCATGCTTGCCAGACAAAGAAGACTACCCAACCATTGGA
CAGAACTGTGTTGTAGCAGGTTGGGGGAGTATAAAATGGCCAAGTGAAAA
GACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCCAAATC
ATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACGGTTTT
GGAACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGAGATTC
TGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATTTGTTG
GTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTTATGCT
CCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCACATTT
TTAAATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTTTG
AGACACACGgatttaaaagattAGAAAGATGTTATGATCCCAAACAACGT
TGGCGCTGTAAAATCAGAGTGAAGTTCTATAAAAACTTTTGCAGTGATGA
ACTAAGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTAAAATAGGAC
CAGTCACACCCAAACGAAAATGTGGCATTTCAAATGCTTTTCAAGGGCGT
GTTGTGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTGGATAGGTTC
GCTTCAATTTCGTAAGCCTGGAACCAAgaaacacatttgtggagccaCTC
TTATTTATCCAAGATggGTTTTGTCAGCTGCACATTGTTTTTCGTTCGAA
AAAGCCAATATTGATGATGTTCTACCATTACTTCGTGTCGAGTTTGGAAT
CCATaaccaaaacaaaacagagcCTTCGTCTCAAGTCAGAAGAATATCAA
TGCTTATTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAAAACACAATA
TATGGTGATTTAATTTTAATTGAACTTGAAAAGACAGTGATGTTGAATGA
TCGAGTAAATATACCATGCTTGCCAGACAAAGAAGACTACCCAACCATTG
GACAGAACTGTGTTGTAGCAGGTTGGGGGAGTATAAAATGGCCAAGTGAA
AAGACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCCAAA
TCATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACGGTT
TTGGAACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGAGAT
TCTGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATTTGT
TGGTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTTATG
CTCCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCACAT
TTTTAAATGTATCTTCGAAGCATTGCAATATTTTTGGTCGTTTATTGGTT
TGAGACACACGgatttaaaagattAGAAAGATGTTATGATCCCAAACAAC
GTTGGCGCTGTAAAATCAGAGTGAAGTTCTATAAAAACTTTTGCAGTGAT
GAACTAAGAAAGCAAACATGTATCAAAAGTTGCGGTGGTTGTAAAATAGG
ACCAGTCACACCCAAACGAAAATGTGGCATTTCAAATGCTTTTCAAGGGC
GTGTTGTGAATGGTGAAAACGCCCCTGAAGGAGCTTACCCTTGGATAGGT
TCGCTTCAATTTCGTAAGCCTGGAACCAAgaaacacatttgtggagccaC
TCTTATTTATCCAAGATggGTTTTGTCAGCTGCACATTGTTTTTCGTTCG
AAAAAGCCAATATTGATGATGTTCTACCATTACTTCGTGTCGAGTTTGGA
ATCCATaaccaaaacaaaacagagcCTTCGTCTCAAGTCAGAAGAATATC
AATGCTTATTCAAAGCCCTGATCTTCAAGTTATCCCAGAGCAAAACACAA
TATATGGTGATTTAATTTTAATTGAACTTGAAAAGACAGTGATGTTGAAT
GATCGAGTAAATATACCATGCTTGCCAGACAAAGAAGACTACCCAACCAT
TGGACAGAACTGTGTTGTAGCAGGTTGGGGGAGTATAAAATGGCCAAGTG
AAAAGACAGGAGGCATTCTTCAACAAGCTCGGTTACCGGTTGTTGGGCCA
AATCATATCGGTTGCCGTAACAACACTGAAGTCATTTGTGTTGGATACGG
TTTTGGAACTCAACTTAGTGGAAAACACCATCCAAATGCATGCAAAGGAG
ATTCTGGCGGCCCACTTGTTTGTCAGAAACAAAGTGGGAATTGGGAATTT
GTTGGTGTAGCAAGTTATGTTCATACTTTGTGCAAGTATTACACAGCTTA
TGCTCCCGTTGGAAAATACATGTCCTGGATCAGTAGCTATGTGCCGGCAC
ATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063886-exon-scaffold_404-1491911889:467420..467731 | TCONS_00063886-exon-scaffold_404-1491911889:467420..467731 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1510915933:467420..467731 | TCONS_00063886-exon-scaffold_404-1510915933:467420..467731 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1575043694:467420..467731 | TCONS_00063886-exon-scaffold_404-1575043694:467420..467731 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1491911889:467957..468264 | TCONS_00063886-exon-scaffold_404-1491911889:467957..468264 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1510915933:467957..468264 | TCONS_00063886-exon-scaffold_404-1510915933:467957..468264 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1575043694:467957..468264 | TCONS_00063886-exon-scaffold_404-1575043694:467957..468264 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1491911889:468681..468984 | TCONS_00063886-exon-scaffold_404-1491911889:468681..468984 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1510915933:468681..468984 | TCONS_00063886-exon-scaffold_404-1510915933:468681..468984 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1575043694:468681..468984 | TCONS_00063886-exon-scaffold_404-1575043694:468681..468984 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1491911889:469301..469643 | TCONS_00063886-exon-scaffold_404-1491911889:469301..469643 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1510915933:469301..469643 | TCONS_00063886-exon-scaffold_404-1510915933:469301..469643 | Clytia hemisphaerica | exon |
| TCONS_00063886-exon-scaffold_404-1575043694:469301..469643 | TCONS_00063886-exon-scaffold_404-1575043694:469301..469643 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:467420..469643 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00063886 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 6.516e-34 Identity = 87/257 (33.85%), Postives = 125/257 (48.64%), Query Frame = 3
Query: 501 RVVNGENAPEGAYPWIGSLQFRKPGTKKHICGATLIYPRWVLSAAHCFSFEKANIDDVLPLLRVEFGIHNQNKTEPSSQVRRISMLIQSPDLQVIPEQNTIYGDLILIELEKTVMLNDRVNIPCLPDKEDYPTIGQNCVVAGWGSIKWPSEKTGGILQQARLPVVG----PNHIGCRNNTEVICVGYGFGTQLSGKHHPNACKGDSGGPLVCQKQSGNWEFVGVASYVHTLCKYYT--AYAPVGKYMSWISSYVPAH 1253
R+VNGE+A G++PW SLQ + T H CG +LI WV++AAHC DV V G +Q E + QV +I+ + ++P ++ T+ D+ L++L + V+ CLP +D G C GWG K+ + KT LQQA LP++ G R +IC +G ++C GDSGGPLVCQK G W VG+ S+ C T YA V K + W+ + A+
Sbjct: 33 RIVNGEDAVPGSWPWQVSLQDK---TGFHFCGGSLISEDWVVTAAHC----GVRTSDV-----VVAGEFDQGSDEENIQVLKIAKVFKNPKFSIL----TVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMIC---------AGASGVSSCMGDSGGPLVCQKD-GAWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQKILAAN 263
The following BLAST results are available for this feature:
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