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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064138 ID=TCONS_00064138|Name=TCONS_00064138|organism=Clytia hemisphaerica|type=transcript|length=2473bp ATCAAAAGTCTGGGGTTGCAAAATTTTGGGGTTCCTCCAGCTTCTGCTGT TTCATGTAACCccacaaaaagaaatcacatcCAGTGAGATCAGGGGGTCA CTCAACATCTCCTCATAGGCTATGTTATGTTATATGTTAACCACTTTGTC ACCCCCGGAATTTTACATTGTaGCGTGGCCCAGTAAAAACCTTATGGTGG GAATCGTATTTTGGACATACCAATGATGAAGATTCGGCAGATTACGTGGG CTATATGGATATGCTTGCTGGTATGCAAGATATCAAGGATTGGTATTCTC TCAAACAAAAAGCTATTTTTGTTGCTCCACAAACAGGCGTTTACAgCTTC TTTTCATGCCCGGAcgattttgttaaattttacaTTTCAACTGATGCAAC TCCTGATAATAAAGAAAATGTTCTGGACGCAAACTTATGTTTCCTTCCTG ATCATCGCACCTCCACACCAGTCACGCTTCAAGCCAATAACAAATATTAC GTCGAAGTACTTTTCGTAGAAGGAATTGGGAGTGACTTTTTTTATATTGG TATGACTTTGCCAGATTTGACAGAAGTTGAAGTGATCACATCAAAATATT TGGAGCCTTACGAATAATTGACAATTATAGACAATTATCGTATCCGTAAA ATGTAAAATGGCTTCCTGAGCGGATAATTCACCGACTGGACTTTTTTCCG ACCTATTGGTCATTTCCGAAACAGTCGTTTCCCCGACAGACATAACCCCA CCAGACATGACATTTCCTCGATTGTTTCACCATGTAAAAACCAATAATCC TTAAAAATGCAAAATCGATAGACTTAGATTTTAATTCCGGGAAAAGTCGG GTAAAATTCTGGTCGGGTAGTTGTTCATTCAGAGAAGCGTCTAGTCGGGg gtacccagctgacacacgacattgtttcaacgttcatctaacgttatatg gacgttatgaacgttagatagaCATTGAAAACAatgttatgtgccagctg ggtaatgACAGTCTGCGAAACGTCTTTCAATTATCGGTCGGAAAAGGTCC GTCTTAGAAAAATTCGTCAGGGAAAAGTCTGGTAACCTAAGAGTTAGCGT ATGGAGAAAAAAGGTTACAATAAATTGTTTTACACAATCGCGTAGTAAGA ATCGGATAATTTAACCCACATGGATATGACAAATTCGAAAGACGTTGAAA TTATCACATCAAAATATTGGGAGCCTTACAAATGAGTTGTAACAAATTCA AAAAGCGTTTGAATGTCCCTAACATTTGAAGCTATACAAATGATTGAAAA CATTAGATTTTTTAACGGCAGCGAACTCTTCCAAGTTGTGTTAAAGCCAT AACATTGGTCACCACTACACTACTTATATAGAATAACTATGCTTATACAC TGAATGCACACCTGGAGAGCTACCCACAGCAGTGAACAACCAAACAGAGT GGAATAGATGAGTAAAGATTCTCTGAACTCCGATTTCATTGAAGATTGCC ATCCTGGATGCCATGAAACTTTAAGTATGAAATTAACTTgaatcgttttc tttactcaaactagaaTAAAACATCTTATGCACGCACAACATGGTGGAGG CTCTATCAGAGTGTTTGGTAAAAACTGATCGGAGATTctccagccggcac acaacgttatttcaacgttcatttaacgttatatggacgttgtgaacgtt agataaacgttgaatcaacgttgtgtgtcagctgatTTAATGTCATATAT ACATTTTCCTGAGTGTCAGAATATTTGTAAAGAACGTTAACTTTATTATG TATGCGATTTATGACttttaatttagaaattttttatacCAGCTCGGAGT AGGGGCAGACACGGTTCCCCGGAGGGGgtgggtactaggtttgcaaggtg gagattatgtcaaaaatcgacccttagccCATTCTGCCTAGGCTAAGTAC CCCCGACCCCCGGGATATAGTCAGATATACTTaaaagttggctagttttt gCTCCAATCAGCTTAACAAAAAattcttaaacttttttttctataaatgc CACAGTGGTCAGCGACCCCTTGTTGAAACGAGTAAAGAAAAAGCTTTCCA AACAACCAAGTTTGATAGggggtttgaaagtttgaaaattttcctaaaGT GCCTAGATGTAGATCTGGAAAGGGAGCCAAAATTATATCGTATATCAACA TCATCCCCTTtaaaaggtatttttttttaattttgaaaatttggatttca tgcCAATAACACGTAACGGTTCCGTTTCGATCCGAAAAGAAATGAAGTCA TTCTATTGGCTAGAAGTGATGTAAAACGTAAAACGTAAAATTGTACCAAt aaaatggcttcattttgtttcggagcgaaacggaaccgtagtGTGTGAAT GTGGTCTTGATATTATATTTCCATTTGTTTTTGGGAATAAAAGAGATacc agtttttctttgaaatgtaCAGC Run BLAST on NCBI transcript from alignment at scaffold_409:60827..65617- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064138 ID=TCONS_00064138|Name=TCONS_00064138|organism=Clytia hemisphaerica|type=transcript|length=4791bp|location=Sequence derived from alignment at scaffold_409:60827..65617- (Clytia hemisphaerica) ATCAAAAGTCTGGGGTTGCAAAATTTTGGGGTTCCTCCAGCTTCTGCTGT
TTCATGTAACCCCACAAAAAGAAATCACATCCAGTGAGATCAGGGGGTCA
CTCAACATCTCCTCATAGGCTATGTTATGTTATATGTTAACCACTTTGTC
ACCCCCGGAATTTTACATTGTGTAAGAAATTTCCTTTCAGAACAATCTAC
TTTACATTCTGTTGAATATTTTAATCATTATTTCTTAGTCGAAGTATATA
TTTTTGAAATCGTCAAGTTTTAAGCTTTCCAAGATGTAAATGTAACGTTT
ATACGACCTATTTATAAAAAGTTGAATTGTTTCTTCTTCATTTTTCTTCC
TATTCTTTTCAAATTTCACGAAAAAAACTGACAGTAAATTACTAAGCTCC
TTCCTACTTTTCCAACGATACCAAATTTTTTAAGATTTCTCAGGTGAGTT
AAGGCAAGTTCTAAACATATTTTGCGTCACGCGCACCGCTTTCCGTTGTT
CATTAACTTTCATATATAGCTCAAAAGAAACGTATCAGGGAGAGGATTTC
GGAAAGTGTTGGGCCGAAAATTTAAATCAAGCCAATCTCAAGATATCGGC
CAAAAACTGATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTTTTTGATGACGTCATCATTATTTGACGT
ATTTTAATTTTTACCGACAGTAAATGACGTCATCTAAAAATTTTGAAAAT
TTCTCAACAAATATTTTAGAATCATTAATCTAAAGTCCCACTAAGGGTCG
GAAAAATCAGAAAATCAAATTTGAGTCACACTAAGGGTCAGAGAAATAAA
AAAACTTTTTACCCCCGGAAAGAACGAAATTTAGTCAAAATTGGTCGTAA
AATTCACAAATGTTTCCTTTTTTTCCCCCTTTTTAGTCCCGGTAAGGGTT
TGGACCCTTATTTAAAGTCGGGTGGCACTCCCCCCCCCCGTCAGCTCGCA
ACCCTAGTACAGGGGGTACTCCAAGCCAGGGAGAACTAAGAGCTCGGAGC
CTTATAAAAAAACGTGTAACCACTTAAGTTTCAATTACTTTTTGGCTTAA
CAAACACTTTTCTATTTGTAGTCGTGTTCTGACAAATGCCTTTTCTCAGG
ACACCCTGTACATAAAGCAAAGCATGTATTTAAGTCTTACCCTAATAAAG
ACACTGAGAAAAAAAATGCCATTTTTTTACAATTTTCAGAGCGTGGCCCA
GTAAAAACCTTATGGTGGGAATCGTATTTTGGACATACCAATGATGAAGA
TTCGGCAGATTACGTGGGCTATATGGATATGCTTGCTGGTATGCAAGATA
TCAAGGATTGGTATTCTCTCAAACAAAAAGCTATTTTTGTTGCTCCACAA
ACAGGCGTTTACAGGTATCCCAGCTGGCACAAAACGTTGTTTCAACGTTC
ATTTAACGTTATATGGACGTTATGAACATTAGATAAACGTTGGAACAACG
TTGTGTGCCAGCTGGGGTTAAAAACTATTCACTTTAACACTATTCATTTT
TACACATTAGGTTTTTTTTAGGAGTGGTTAAGAACTAGGGGGCGGCTTCC
TGTACTACCCTTACTCTTATCTGTGAGGGGGTGACTAGCCAAGTGCACTT
GTCCAGCTCTAAGTTTCAGAAGTTTTATTTGTACCATTAGTAGCGGAATA
CAAAAAAGATTTACACAAGATTCTTTTTCAATATCTATTGATCCCTTTTT
CTCAATATTTTGCTTTTAGCTTCTTTTCATGCCCGGACGATTTTGTTAAA
TTTTACATTTCAACTGATGCAACTCCTGATAATAAAGAAAATGTTCTGGA
CGCAAACTTATGTTTCCTTCCGTAAGTTATACATCAAGCGATCTTTGGAT
GACTTGGATAAAAGTTAGTTAGTTAAAAGTTAGTTGATGATTTAGCAGAC
TACTCGAATTTTTGATTCAACCTTCTCTTAAATAATTAAATCTTTCAAAA
TATTTTGAAAAAAAAGATGAAAAAATGTAGAAGAAAAAGAGGAAATAAAA
GAAAAATTTCAAATGGCTAAAAATCTTAGAATTTACATTTTCACGAGTTC
CGAGTATCTATTCAAGTTGCTCGTACAATTCTTTGCTTAATTGTTACGTC
TCAAACTTTTACCCGTTTTCGGCCAGTAGCCTTTTGAAGATAAGATAAAG
CCTTAAAATTAGTAAGCTCAAAATTATCTATCTTTCAACGAATTATCACT
TTTTGGTCGAGGTGTAATGACGTTCAGAGGTTTAGCTCAAAAAATTCGTT
GGCAAGATAATTTAGAGCTTACAAATTTTAGGGCTTTATCTTTTCTTTAA
AGTGGGTAAAACTTTAGGCTGTAGCATTTAAACAAAGAATTTTAAAAAGC
TTAAAAAATAGCCAATCTTTATTCAAATTCTACCATATCTACTTTTTAGT
GATCATCGCACCTCCACACCAGTCACGCTTCAAGCCAATAACAAATATTA
CGTCGAAGTACTTTTCGTAGAAGGAATTGGGAGTGACTTTTTTTATATTG
GTATGACTTTGCCAGATTTGACAGAAGTTGAAGTGATCACATCAAAATAT
TTGGAGCCTTACGAATAATTGACAATTATAGACAATTATCGTATCCGTAA
AATGTAAAATGGCTTCCTGAGCGGATAATTCACCGACTGGACTTTTTTCC
GACCTATTGGTCATTTCCGAAACAGTCGTTTCCCCGACAGACATAACCCC
ACCAGACATGACATTTCCTCGATTGTTTCACCATGTAAAAACCAATAATC
CTTAAAAATGCAAAATCGATAGACTTAGATTTTAATTCCGGGAAAAGTCG
GGTAAAATTCTGGTCGGGTAGTTGTTCATTCAGAGAAGCGTCTAGTCGGG
GGTACCCAGCTGACACACGACATTGTTTCAACGTTCATCTAACGTTATAT
GGACGTTATGAACGTTAGATAGACATTGAAAACAATGTTATGTGCCAGCT
GGGTAATGACAGTCTGCGAAACGTCTTTCAATTATCGGTCGGAAAAGGTC
CGTCTTAGAAAAATTCGTCAGGGAAAAGTCTGGTAACCTAAGAGTTAGCG
TATGGAGAAAAAAGGTTACAATAAATTGTTTTACACAATCGCGTAGTAAG
AATCGGATAATTTAACCCACATGGATATGACAAATTCGAAAGACGTTGAA
ATTATCACATCAAAATATTGGGAGCCTTACAAATGAGTTGTAACAAATTC
AAAAAGCGTTTGAATGTCCCTAACATTTGAAGCTATACAAATGATTGAAA
ACATTAGATTTTTTAACGGCAGCGAACTCTTCCAAGTTGTGTTAAAGCCA
TAACATTGGTCATCACTACACTACTTACATAGAATAACTATGCCTATACA
CTGAATGCNTAAAGCCATAACATTGGTCACCACTACACTACTTATATAGA
ATAACTATGCTTATACACTGAATGCACACCTGGAGAGCTACCCACAGCAG
TGAACAACCAAACAGAGTGGAATAGATGAGTAAAGATTCTCTGAACTCCG
ATTTCATTGAAGATTGCCATCCTGGATGCCATGAAACTTTAAGTATGAAA
TTAACTTGAATCGTTTTCTTTACTCAAACTAGAATAAAACATCTTATGCA
CGCACAACATGGTGGAGGCTCTATCAGAGTGTTTGGTAAAAACTGATCGG
AGATTCTCCAGCCGGCACACAACGTTATTTCAACGTTCATTTAACGTTAT
ATGGACGTTGTGAACGTTAGATAAACGTTGAATCAACGTTGTGTGTCAGC
TGATTTAATGTCATATATACATTTTCCTGAGTGTCAGAATATTTGTAAAG
AACGTTAACTTTATTATGTATGCGATTTATGACTTTTAATTTAGAAATTT
TTTATACCAGCTCGGAGTAGGGGCAGACACGGTTCCCCGGAGGGGGTGGG
TACTAGGTTTGCAAGGTGGAGATTATGTCAAAAATCGACCCTTAGCCCAT
TCTGCCTAGGCTAAGTACCCCCGACCCCCGGGATATAGTCAGATATACTT
AAAAGTTGGCTAGTTTTTGCTCCAATCAGCTTAACAAAAAATTCTTAAAC
TTTTTTTTCTATAAATGCCACAGTGGTCAGCGACCCCTTGTTGAAACGAG
TAAAGAAAAAGCTTTCCAAACAACCAAGTTTGATAGGGGGTTTGAAAGTT
TGAAAATTTTCCTAAAGTGCCTAGATGTAGATCTGGAAAGGGAGCCAAAA
TTATATCGTATATCAACATCATCCCCTTTAAAAGGTATTTTTTTTTAATT
TTGAAAATTTGGATTTCATGCCAATAACACGTAACGGTTCCGTTTCGATC
CGAAAAGAAATGAAGTCATTCTATTGGCTAGAAGTGATGTAAAACGTAAA
ACGTAAAATTGTACCAATAAAATGGCTTCATTTTGTTTCGGAGCGAAACG
GAACCGTAGTGTGTGAATGTGGTCTTGATATTATATTTCCATTTGTTTTT
GGGAATAAAAGAGATACCAGTTTTTCTTTGAAATGTACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064138-exon-scaffold_409-1575043694:65447..65617 | TCONS_00064138-exon-scaffold_409-1575043694:65447..65617 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1575043694:63954..64128 | TCONS_00064138-exon-scaffold_409-1575043694:63954..64128 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1575043694:63497..63598 | TCONS_00064138-exon-scaffold_409-1575043694:63497..63598 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1575043694:62014..62918 | TCONS_00064138-exon-scaffold_409-1575043694:62014..62918 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1575043694:60827..61946 | TCONS_00064138-exon-scaffold_409-1575043694:60827..61946 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1510915933:65447..65617 | TCONS_00064138-exon-scaffold_409-1510915933:65447..65617 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1510915933:63954..64128 | TCONS_00064138-exon-scaffold_409-1510915933:63954..64128 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1510915933:63497..63598 | TCONS_00064138-exon-scaffold_409-1510915933:63497..63598 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1510915933:62014..62918 | TCONS_00064138-exon-scaffold_409-1510915933:62014..62918 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1510915933:60827..61946 | TCONS_00064138-exon-scaffold_409-1510915933:60827..61946 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1491911889:65447..65617 | TCONS_00064138-exon-scaffold_409-1491911889:65447..65617 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1491911889:63954..64128 | TCONS_00064138-exon-scaffold_409-1491911889:63954..64128 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1491911889:63497..63598 | TCONS_00064138-exon-scaffold_409-1491911889:63497..63598 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1491911889:62014..62918 | TCONS_00064138-exon-scaffold_409-1491911889:62014..62918 | Clytia hemisphaerica | exon |
TCONS_00064138-exon-scaffold_409-1491911889:60827..61946 | TCONS_00064138-exon-scaffold_409-1491911889:60827..61946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_409 | supercontig | scaffold_409:60827..65617 - |
Blast
The following BLAST results are available for this feature:
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