TCONS_00064138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064138
Unique NameTCONS_00064138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064138 ID=TCONS_00064138|Name=TCONS_00064138|organism=Clytia hemisphaerica|type=transcript|length=2473bp
ATCAAAAGTCTGGGGTTGCAAAATTTTGGGGTTCCTCCAGCTTCTGCTGT
TTCATGTAACCccacaaaaagaaatcacatcCAGTGAGATCAGGGGGTCA
CTCAACATCTCCTCATAGGCTATGTTATGTTATATGTTAACCACTTTGTC
ACCCCCGGAATTTTACATTGTaGCGTGGCCCAGTAAAAACCTTATGGTGG
GAATCGTATTTTGGACATACCAATGATGAAGATTCGGCAGATTACGTGGG
CTATATGGATATGCTTGCTGGTATGCAAGATATCAAGGATTGGTATTCTC
TCAAACAAAAAGCTATTTTTGTTGCTCCACAAACAGGCGTTTACAgCTTC
TTTTCATGCCCGGAcgattttgttaaattttacaTTTCAACTGATGCAAC
TCCTGATAATAAAGAAAATGTTCTGGACGCAAACTTATGTTTCCTTCCTG
ATCATCGCACCTCCACACCAGTCACGCTTCAAGCCAATAACAAATATTAC
GTCGAAGTACTTTTCGTAGAAGGAATTGGGAGTGACTTTTTTTATATTGG
TATGACTTTGCCAGATTTGACAGAAGTTGAAGTGATCACATCAAAATATT
TGGAGCCTTACGAATAATTGACAATTATAGACAATTATCGTATCCGTAAA
ATGTAAAATGGCTTCCTGAGCGGATAATTCACCGACTGGACTTTTTTCCG
ACCTATTGGTCATTTCCGAAACAGTCGTTTCCCCGACAGACATAACCCCA
CCAGACATGACATTTCCTCGATTGTTTCACCATGTAAAAACCAATAATCC
TTAAAAATGCAAAATCGATAGACTTAGATTTTAATTCCGGGAAAAGTCGG
GTAAAATTCTGGTCGGGTAGTTGTTCATTCAGAGAAGCGTCTAGTCGGGg
gtacccagctgacacacgacattgtttcaacgttcatctaacgttatatg
gacgttatgaacgttagatagaCATTGAAAACAatgttatgtgccagctg
ggtaatgACAGTCTGCGAAACGTCTTTCAATTATCGGTCGGAAAAGGTCC
GTCTTAGAAAAATTCGTCAGGGAAAAGTCTGGTAACCTAAGAGTTAGCGT
ATGGAGAAAAAAGGTTACAATAAATTGTTTTACACAATCGCGTAGTAAGA
ATCGGATAATTTAACCCACATGGATATGACAAATTCGAAAGACGTTGAAA
TTATCACATCAAAATATTGGGAGCCTTACAAATGAGTTGTAACAAATTCA
AAAAGCGTTTGAATGTCCCTAACATTTGAAGCTATACAAATGATTGAAAA
CATTAGATTTTTTAACGGCAGCGAACTCTTCCAAGTTGTGTTAAAGCCAT
AACATTGGTCACCACTACACTACTTATATAGAATAACTATGCTTATACAC
TGAATGCACACCTGGAGAGCTACCCACAGCAGTGAACAACCAAACAGAGT
GGAATAGATGAGTAAAGATTCTCTGAACTCCGATTTCATTGAAGATTGCC
ATCCTGGATGCCATGAAACTTTAAGTATGAAATTAACTTgaatcgttttc
tttactcaaactagaaTAAAACATCTTATGCACGCACAACATGGTGGAGG
CTCTATCAGAGTGTTTGGTAAAAACTGATCGGAGATTctccagccggcac
acaacgttatttcaacgttcatttaacgttatatggacgttgtgaacgtt
agataaacgttgaatcaacgttgtgtgtcagctgatTTAATGTCATATAT
ACATTTTCCTGAGTGTCAGAATATTTGTAAAGAACGTTAACTTTATTATG
TATGCGATTTATGACttttaatttagaaattttttatacCAGCTCGGAGT
AGGGGCAGACACGGTTCCCCGGAGGGGgtgggtactaggtttgcaaggtg
gagattatgtcaaaaatcgacccttagccCATTCTGCCTAGGCTAAGTAC
CCCCGACCCCCGGGATATAGTCAGATATACTTaaaagttggctagttttt
gCTCCAATCAGCTTAACAAAAAattcttaaacttttttttctataaatgc
CACAGTGGTCAGCGACCCCTTGTTGAAACGAGTAAAGAAAAAGCTTTCCA
AACAACCAAGTTTGATAGggggtttgaaagtttgaaaattttcctaaaGT
GCCTAGATGTAGATCTGGAAAGGGAGCCAAAATTATATCGTATATCAACA
TCATCCCCTTtaaaaggtatttttttttaattttgaaaatttggatttca
tgcCAATAACACGTAACGGTTCCGTTTCGATCCGAAAAGAAATGAAGTCA
TTCTATTGGCTAGAAGTGATGTAAAACGTAAAACGTAAAATTGTACCAAt
aaaatggcttcattttgtttcggagcgaaacggaaccgtagtGTGTGAAT
GTGGTCTTGATATTATATTTCCATTTGTTTTTGGGAATAAAAGAGATacc
agtttttctttgaaatgtaCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_409:60827..65617-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064138 ID=TCONS_00064138|Name=TCONS_00064138|organism=Clytia hemisphaerica|type=transcript|length=4791bp|location=Sequence derived from alignment at scaffold_409:60827..65617- (Clytia hemisphaerica)
ATCAAAAGTCTGGGGTTGCAAAATTTTGGGGTTCCTCCAGCTTCTGCTGT
TTCATGTAACCCCACAAAAAGAAATCACATCCAGTGAGATCAGGGGGTCA
CTCAACATCTCCTCATAGGCTATGTTATGTTATATGTTAACCACTTTGTC
ACCCCCGGAATTTTACATTGTGTAAGAAATTTCCTTTCAGAACAATCTAC
TTTACATTCTGTTGAATATTTTAATCATTATTTCTTAGTCGAAGTATATA
TTTTTGAAATCGTCAAGTTTTAAGCTTTCCAAGATGTAAATGTAACGTTT
ATACGACCTATTTATAAAAAGTTGAATTGTTTCTTCTTCATTTTTCTTCC
TATTCTTTTCAAATTTCACGAAAAAAACTGACAGTAAATTACTAAGCTCC
TTCCTACTTTTCCAACGATACCAAATTTTTTAAGATTTCTCAGGTGAGTT
AAGGCAAGTTCTAAACATATTTTGCGTCACGCGCACCGCTTTCCGTTGTT
CATTAACTTTCATATATAGCTCAAAAGAAACGTATCAGGGAGAGGATTTC
GGAAAGTGTTGGGCCGAAAATTTAAATCAAGCCAATCTCAAGATATCGGC
CAAAAACTGATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTTTTTTGATGACGTCATCATTATTTGACGT
ATTTTAATTTTTACCGACAGTAAATGACGTCATCTAAAAATTTTGAAAAT
TTCTCAACAAATATTTTAGAATCATTAATCTAAAGTCCCACTAAGGGTCG
GAAAAATCAGAAAATCAAATTTGAGTCACACTAAGGGTCAGAGAAATAAA
AAAACTTTTTACCCCCGGAAAGAACGAAATTTAGTCAAAATTGGTCGTAA
AATTCACAAATGTTTCCTTTTTTTCCCCCTTTTTAGTCCCGGTAAGGGTT
TGGACCCTTATTTAAAGTCGGGTGGCACTCCCCCCCCCCGTCAGCTCGCA
ACCCTAGTACAGGGGGTACTCCAAGCCAGGGAGAACTAAGAGCTCGGAGC
CTTATAAAAAAACGTGTAACCACTTAAGTTTCAATTACTTTTTGGCTTAA
CAAACACTTTTCTATTTGTAGTCGTGTTCTGACAAATGCCTTTTCTCAGG
ACACCCTGTACATAAAGCAAAGCATGTATTTAAGTCTTACCCTAATAAAG
ACACTGAGAAAAAAAATGCCATTTTTTTACAATTTTCAGAGCGTGGCCCA
GTAAAAACCTTATGGTGGGAATCGTATTTTGGACATACCAATGATGAAGA
TTCGGCAGATTACGTGGGCTATATGGATATGCTTGCTGGTATGCAAGATA
TCAAGGATTGGTATTCTCTCAAACAAAAAGCTATTTTTGTTGCTCCACAA
ACAGGCGTTTACAGGTATCCCAGCTGGCACAAAACGTTGTTTCAACGTTC
ATTTAACGTTATATGGACGTTATGAACATTAGATAAACGTTGGAACAACG
TTGTGTGCCAGCTGGGGTTAAAAACTATTCACTTTAACACTATTCATTTT
TACACATTAGGTTTTTTTTAGGAGTGGTTAAGAACTAGGGGGCGGCTTCC
TGTACTACCCTTACTCTTATCTGTGAGGGGGTGACTAGCCAAGTGCACTT
GTCCAGCTCTAAGTTTCAGAAGTTTTATTTGTACCATTAGTAGCGGAATA
CAAAAAAGATTTACACAAGATTCTTTTTCAATATCTATTGATCCCTTTTT
CTCAATATTTTGCTTTTAGCTTCTTTTCATGCCCGGACGATTTTGTTAAA
TTTTACATTTCAACTGATGCAACTCCTGATAATAAAGAAAATGTTCTGGA
CGCAAACTTATGTTTCCTTCCGTAAGTTATACATCAAGCGATCTTTGGAT
GACTTGGATAAAAGTTAGTTAGTTAAAAGTTAGTTGATGATTTAGCAGAC
TACTCGAATTTTTGATTCAACCTTCTCTTAAATAATTAAATCTTTCAAAA
TATTTTGAAAAAAAAGATGAAAAAATGTAGAAGAAAAAGAGGAAATAAAA
GAAAAATTTCAAATGGCTAAAAATCTTAGAATTTACATTTTCACGAGTTC
CGAGTATCTATTCAAGTTGCTCGTACAATTCTTTGCTTAATTGTTACGTC
TCAAACTTTTACCCGTTTTCGGCCAGTAGCCTTTTGAAGATAAGATAAAG
CCTTAAAATTAGTAAGCTCAAAATTATCTATCTTTCAACGAATTATCACT
TTTTGGTCGAGGTGTAATGACGTTCAGAGGTTTAGCTCAAAAAATTCGTT
GGCAAGATAATTTAGAGCTTACAAATTTTAGGGCTTTATCTTTTCTTTAA
AGTGGGTAAAACTTTAGGCTGTAGCATTTAAACAAAGAATTTTAAAAAGC
TTAAAAAATAGCCAATCTTTATTCAAATTCTACCATATCTACTTTTTAGT
GATCATCGCACCTCCACACCAGTCACGCTTCAAGCCAATAACAAATATTA
CGTCGAAGTACTTTTCGTAGAAGGAATTGGGAGTGACTTTTTTTATATTG
GTATGACTTTGCCAGATTTGACAGAAGTTGAAGTGATCACATCAAAATAT
TTGGAGCCTTACGAATAATTGACAATTATAGACAATTATCGTATCCGTAA
AATGTAAAATGGCTTCCTGAGCGGATAATTCACCGACTGGACTTTTTTCC
GACCTATTGGTCATTTCCGAAACAGTCGTTTCCCCGACAGACATAACCCC
ACCAGACATGACATTTCCTCGATTGTTTCACCATGTAAAAACCAATAATC
CTTAAAAATGCAAAATCGATAGACTTAGATTTTAATTCCGGGAAAAGTCG
GGTAAAATTCTGGTCGGGTAGTTGTTCATTCAGAGAAGCGTCTAGTCGGG
GGTACCCAGCTGACACACGACATTGTTTCAACGTTCATCTAACGTTATAT
GGACGTTATGAACGTTAGATAGACATTGAAAACAATGTTATGTGCCAGCT
GGGTAATGACAGTCTGCGAAACGTCTTTCAATTATCGGTCGGAAAAGGTC
CGTCTTAGAAAAATTCGTCAGGGAAAAGTCTGGTAACCTAAGAGTTAGCG
TATGGAGAAAAAAGGTTACAATAAATTGTTTTACACAATCGCGTAGTAAG
AATCGGATAATTTAACCCACATGGATATGACAAATTCGAAAGACGTTGAA
ATTATCACATCAAAATATTGGGAGCCTTACAAATGAGTTGTAACAAATTC
AAAAAGCGTTTGAATGTCCCTAACATTTGAAGCTATACAAATGATTGAAA
ACATTAGATTTTTTAACGGCAGCGAACTCTTCCAAGTTGTGTTAAAGCCA
TAACATTGGTCATCACTACACTACTTACATAGAATAACTATGCCTATACA
CTGAATGCNTAAAGCCATAACATTGGTCACCACTACACTACTTATATAGA
ATAACTATGCTTATACACTGAATGCACACCTGGAGAGCTACCCACAGCAG
TGAACAACCAAACAGAGTGGAATAGATGAGTAAAGATTCTCTGAACTCCG
ATTTCATTGAAGATTGCCATCCTGGATGCCATGAAACTTTAAGTATGAAA
TTAACTTGAATCGTTTTCTTTACTCAAACTAGAATAAAACATCTTATGCA
CGCACAACATGGTGGAGGCTCTATCAGAGTGTTTGGTAAAAACTGATCGG
AGATTCTCCAGCCGGCACACAACGTTATTTCAACGTTCATTTAACGTTAT
ATGGACGTTGTGAACGTTAGATAAACGTTGAATCAACGTTGTGTGTCAGC
TGATTTAATGTCATATATACATTTTCCTGAGTGTCAGAATATTTGTAAAG
AACGTTAACTTTATTATGTATGCGATTTATGACTTTTAATTTAGAAATTT
TTTATACCAGCTCGGAGTAGGGGCAGACACGGTTCCCCGGAGGGGGTGGG
TACTAGGTTTGCAAGGTGGAGATTATGTCAAAAATCGACCCTTAGCCCAT
TCTGCCTAGGCTAAGTACCCCCGACCCCCGGGATATAGTCAGATATACTT
AAAAGTTGGCTAGTTTTTGCTCCAATCAGCTTAACAAAAAATTCTTAAAC
TTTTTTTTCTATAAATGCCACAGTGGTCAGCGACCCCTTGTTGAAACGAG
TAAAGAAAAAGCTTTCCAAACAACCAAGTTTGATAGGGGGTTTGAAAGTT
TGAAAATTTTCCTAAAGTGCCTAGATGTAGATCTGGAAAGGGAGCCAAAA
TTATATCGTATATCAACATCATCCCCTTTAAAAGGTATTTTTTTTTAATT
TTGAAAATTTGGATTTCATGCCAATAACACGTAACGGTTCCGTTTCGATC
CGAAAAGAAATGAAGTCATTCTATTGGCTAGAAGTGATGTAAAACGTAAA
ACGTAAAATTGTACCAATAAAATGGCTTCATTTTGTTTCGGAGCGAAACG
GAACCGTAGTGTGTGAATGTGGTCTTGATATTATATTTCCATTTGTTTTT
GGGAATAAAAGAGATACCAGTTTTTCTTTGAAATGTACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040213XLOC_040213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064138-exon-scaffold_409-1575043694:65447..65617TCONS_00064138-exon-scaffold_409-1575043694:65447..65617Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1575043694:63954..64128TCONS_00064138-exon-scaffold_409-1575043694:63954..64128Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1575043694:63497..63598TCONS_00064138-exon-scaffold_409-1575043694:63497..63598Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1575043694:62014..62918TCONS_00064138-exon-scaffold_409-1575043694:62014..62918Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1575043694:60827..61946TCONS_00064138-exon-scaffold_409-1575043694:60827..61946Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1510915933:65447..65617TCONS_00064138-exon-scaffold_409-1510915933:65447..65617Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1510915933:63954..64128TCONS_00064138-exon-scaffold_409-1510915933:63954..64128Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1510915933:63497..63598TCONS_00064138-exon-scaffold_409-1510915933:63497..63598Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1510915933:62014..62918TCONS_00064138-exon-scaffold_409-1510915933:62014..62918Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1510915933:60827..61946TCONS_00064138-exon-scaffold_409-1510915933:60827..61946Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1491911889:65447..65617TCONS_00064138-exon-scaffold_409-1491911889:65447..65617Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1491911889:63954..64128TCONS_00064138-exon-scaffold_409-1491911889:63954..64128Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1491911889:63497..63598TCONS_00064138-exon-scaffold_409-1491911889:63497..63598Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1491911889:62014..62918TCONS_00064138-exon-scaffold_409-1491911889:62014..62918Clytia hemisphaericaexon
TCONS_00064138-exon-scaffold_409-1491911889:60827..61946TCONS_00064138-exon-scaffold_409-1491911889:60827..61946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_409supercontigscaffold_409:60827..65617 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.369884	0.0655045	0.206465	0.169126	1.9959	1.56185	10.7413	12.196	3.55319	3.61538	0	1.96791	0	0.0417499	0	0	0	0	0	0	0	0	0	0	0	0	0.254929	0.109551	0.0634581	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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