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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064549 ID=TCONS_00064549|Name=TCONS_00064549|organism=Clytia hemisphaerica|type=transcript|length=1686bp
CGGACATAATCGACAATCTCGAACCCTAGTACCTCTCCCCAGTTAATAAT
AAGTGGAAGGGGATACACCGGGTGAATAGCAGGAGCATTTTTATACTTGA
TTCTTTGATTCCTCTTTTTGATTTTCCAGGGCGTGCTCTCTGGAGAAATT
TCAGATCAGAGCagtcttaaaatgaaaaaagacaacAAGACCGCAAGGAA
AGAGCGAAGAAAAGTCGCGGCATCAACTATTCGAACATTGAAGATGTCAG
AAAGCGTAAAAGACGAGCGTACAATTGCAGCTAAACTTGgcttaaaaata
agaaaagaaagatttgacgaaaaagaaaaGCTAATTGCTAGTCAACTTGG
AATCAGTCAAAGGCAATTTCAGCTGCAGAAGAAACAGAAGCTGTTGGATT
CGAACGGCAATCCCGTACAACCATCTGCTACCTCATCTGCAGTCACAACT
GTCACTGCTACCTCCAACCTTTCTGTTAATTCTGATGTCTCTGATACTTC
TTTTTCCACTCTTACTGCCATCTCCGATTCCCCTCTTTCCTCGACTCTCT
CTTTTGCTCCTTCTGTTTCTACAGCCTCCACCGTCTCTGACGTCACCTCT
GTCTCTGATTCCCTAGCTTCCACTACTACTTCCATTTCTGATGCCCCTCT
TCTTTCCTCTACTTGCTCTGTTGCTACCTCTGTTTCTACCACCTCTGTCT
CTGATTCTCTAGCTTCCACTACTACTTCCATCTCTGATGCCCCTCTTCTT
TCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGA
TTCCCTAGCTTCCACTACTACTTCTATTTCTGATGCCCCTCTTCTTTCCT
CTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCC
CTAGCTTCCACTACTACCATTTCTGATGCCTCTCTTCCTTCCTCTACTTG
CTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTT
CCACTACTACTTCCATCTCTAATGTCCCACTTCTTTCCTCGAATNTATTT
CTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCT
ACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCTGATGC
CTCTCTTCTTCCTTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCT
CTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCTGATGCCTCTCTT
CCTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTC
TGATTCCCTAGCTTCCACTACTACTTCCATCTCTAATGTCCCACTTCTTT
CCTCGAATTCTTCTGTTTCAAAAAGTGACAAGTGGTACCACAAAATTGAC
AGTTACCCACCCTTAAGATTGCACGTGGGTATGAATGTCGCCGTTGCGTA
CAAGCGGTTAGAATTTGCACGCGTGGTGGAAGAAGCCGAAATTGACGACC
ACCTAAACGAGGTGGTGAAACTTGAGTATTTCGAGATTACGAACAAAAAA
GAGGGCAGAATCAGGGAGAAGAAGAGGAGACCACTCGTCACGAAGGACGA
AACATATCACATCTTGCAGAGAATCTCTTTGAAAAAAGATGAAAACAACG
AGTACCTGATCGACAACTATGATGAAGTTCAAGAGC Run BLAST on NCBI protein sequence of TCONS_00064549-protein >TCONS_00064549-protein ID=TCONS_00064549-protein|Name=TCONS_00064549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MKKDNKTARKERRKVAASTIRTLKMSESVKDERTIAAKLGLKIRKERFDE
KEKLIASQLGISQRQFQLQKKQKLLDSNGNPVQPSATSSAVTTVTATSNL
SVNSDVSDTSFSTLTAISDSPLSSTLSFAPSVSTASTVSDVTSVSDSLAS
TTTSISDAPLLSSTCSVATSVSTTSVSDSLASTTTSISDAPLLSSTCSVA
PSVSTTSVSDSLASTTTSISDAPLLSSTCSVAPSVSTTSVSDSLASTTTI
SDASLPSSTCSVAPSVSTTSVSDSLASTTTSISNVPLLSSNXFLMPLFFP
LLALLLPLFLPPLSLIP Run BLAST on NCBI transcript from alignment at scaffold_419:454367..457107+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064549 ID=TCONS_00064549|Name=TCONS_00064549|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_419:454367..457107+ (Clytia hemisphaerica)
CGGACATAATCGACAATCTCGAACCCTAGTACCTCTCCCCAGTTAATAAT
AAGTGGAAGGGGATACACCGGGTGAATAGCAGGAGCATTTTTATACTTGA
TTCTTTGATTCCTCTTTTTGATTTTCCAGGGCGTGCTCTCTGGAGAAATT
TCAGATCAGAGCagtcttaaaatgaaaaaagacaacAAGACCGCAAGGAA
AGAGCGAAGAAAAGTCGCGGCATCAGTAAGTATATTTTCTCTGGTCCGAT
ATTTACTTTCATTATGGTTCATTCCCTTAGGGCTCTTTACATCATAAATC
TGTTTACtttattataagaatacaaGAACTTGAAAGCTCAGCGATGCTTA
GGTAGAGGGCTTGACAAGGCTGTAAAATGATTATAAGGATGCTTATATCC
CATGCAAAATTACagagaaattccgaaaatccgtaaaatcccACCCGAAA
ACAGGCAAAATTAGAAGGCTAAGGTAATGCTTatcatatgcttaattttt
aaaaattcatagACTATTCGAACATTGAAGATGTNACTTACAGTATCata
tgcataatttttaaaaattcatagACTATTCGAACATTGAAGATGTCAGA
AAGCGTAAAAGACGAGCGTACAATTGCAGCTAAACTTGgcttaaaaataa
gaaaagaaagatttgacgaaaaagaaaagtaagaaACATGCTTTTTAGTT
TTTCTGAAATTGTCATTTATGATATGTTACAAGTCAGTATTTCTGTAACT
TCTTAAAAAAGGCAAATAATTAATCCGTAATTCTGCACCCAACTTATCTT
CTTCTCTTGTATATAAGTAAATGATTATACCCAAGGACCGAAACTTTTGC
GCCAGATTTATGACTTTTCGGTAGATTACCCCTATTTTGAGGAagtagcg
agattatgtatcggagatattctacggctacggttgcggggctgtCCATG
CGGGTCGTCGCAAAAGGCGACATGttgttgtctactttgctctgtacggg
aaaaacaccgtataagcaaagtcgacataatgccgtacgtcaaatatcga
acttgctttcacccgccattacttgccttactcgccatttccctcgccgc
TTTAACCGTAACCGTAGAGAACTTCAGATACATAATCTTGCTAGTGTGAC
GTCCAGGGGGGTTCTGGTTTTTCGATTGtgaaatccagggtggtcagtaa
aatgggATGAAAAAATCAGAGGGGGTCCTCgacaattgaaaaagaaatca
aggGGTGGTAGAGACCGTGGTATTTCCAAAATAGCCTCCTCAATGTAGGT
GGTTCAATTTTATTGTGGAAACTAGTAAGTGAAAGAGACTGATTTACAAA
ATTCAAATAATTAGTTTCCCACTTTTATTTACAGGCTAATTGCTAGTCAA
CTTGGAATCAGTCAAAGGCAATTTCAGCTGCAGAAGAAACAGAAGCTGTT
GGATTCGAACGGCAATCCCGTACAACCATCTGCTACCTCATCTGCAGTCA
CAACTGTCACTGCTACCTCCAACCTTTCTGTTAATTCTGATGTCTCTGAT
ACTTCTTTTTCCACTCTTACTGCCATCTCCGATTCCCCTCTTTCCTCGAC
TCTCTCTTTTGCTCCTTCTGTTTCTACAGCCTCCACCGTCTCTGACGTCA
CCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTCCATTTCTGATGCC
CCTCTTCTTTCCTCTACTTGCTCTGTTGCTACCTCTGTTTCTACCACCTC
TGTCTCTGATTCTCTAGCTTCCACTACTACTTCCATCTCTGATGCCCCTC
TTCTTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTC
TCTGATTCCCTAGCTTCCACTACTACTTCTATTTCTGATGCCCCTCTTCT
TTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTG
ATTCCCTAGCTTCCACTACTACCATTTCTGATGCCTCTCTTCCTTCCTCT
ACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCT
AGCTTCCACTACTACTTCCATCTCTAATGTCCCACTTCTTTCCTCGAATN
TATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCTCCCTCTG
TTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCT
GATGCCTCTCTTCTTCCTTCTACTTGCTCTGTTGCTCCCTCTGTTTCTAC
CACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCTGATGCCT
CTCTTCCTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCT
GTCTCTGATTCCCTAGCTTCCACTACTACTTCCATCTCTAATGTCCCACT
TCTTTCCTCGAATTCTTCTGTTTCAAAAAGTGACAAGTGGTACCACAAAA
TTGACAGTTACCCACCCTTAAGATTGCACGTGGGTATGAATGTCGCCGTT
GCGTACAAGCGGTTAGAATTTGCACGCGTGGTGGAAGAAGCCGAAATTGA
CGACCACCTAAACGAGGTGGTGAAACTTGAGTATTTCGAGATTACGAACA
AAAAAGAGGGCAGAATCAGGGAGAAGAAGAGGAGACCACTCGTCACGAAG
GACGAAACATATCACATCTTGCAGAGAATCTCTTTGAAAAAAGATGAAAA
CAACGAGTACCTGATCGACAACTATGATGAAGTTCAAGAGC Coding sequence (CDS) from alignment at scaffold_419:454367..457107+ >TCONS_00064549 ID=TCONS_00064549|Name=TCONS_00064549|organism=Clytia hemisphaerica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_419:454367..457107+ (Clytia hemisphaerica)
atgaaaaaagacaacAAGACCGCAAGGAAAGAGCGAAGAAAAGTCGCGGC
ATCAACTATTCGAACATTGAAGATGTCAGAAAGCGTAAAAGACGAGCGTA
CAATTGCAGCTAAACTTGgcttaaaaataagaaaagaaagatttgacgaa
aaagaaaaGCTAATTGCTAGTCAACTTGGAATCAGTCAAAGGCAATTTCA
GCTGCAGAAGAAACAGAAGCTGTTGGATTCGAACGGCAATCCCGTACAAC
CATCTGCTACCTCATCTGCAGTCACAACTGTCACTGCTACCTCCAACCTT
TCTGTTAATTCTGATGTCTCTGATACTTCTTTTTCCACTCTTACTGCCAT
CTCCGATTCCCCTCTTTCCTCGACTCTCTCTTTTGCTCCTTCTGTTTCTA
CAGCCTCCACCGTCTCTGACGTCACCTCTGTCTCTGATTCCCTAGCTTCC
ACTACTACTTCCATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGT
TGCTACCTCTGTTTCTACCACCTCTGTCTCTGATTCTCTAGCTTCCACTA
CTACTTCCATCTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCT
CCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTAC
TTCTATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCTCCCT
CTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATT
TCTGATGCCTCTCTTCCTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTC
TACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTCCATCTCTA
ATGTCCCACTTCTTTCCTCGAATNTATTTCTGATGCCCCTCTTCTTTCCT
CTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCC
CTAGatgaaaaaagacaacAAGACCGCAAGGAAAGAGCGAAGAAAAGTCG
CGGCATCAACTATTCGAACATTGAAGATGTCAGAAAGCGTAAAAGACGAG
CGTACAATTGCAGCTAAACTTGgcttaaaaataagaaaagaaagatttga
cgaaaaagaaaaGCTAATTGCTAGTCAACTTGGAATCAGTCAAAGGCAAT
TTCAGCTGCAGAAGAAACAGAAGCTGTTGGATTCGAACGGCAATCCCGTA
CAACCATCTGCTACCTCATCTGCAGTCACAACTGTCACTGCTACCTCCAA
CCTTTCTGTTAATTCTGATGTCTCTGATACTTCTTTTTCCACTCTTACTG
CCATCTCCGATTCCCCTCTTTCCTCGACTCTCTCTTTTGCTCCTTCTGTT
TCTACAGCCTCCACCGTCTCTGACGTCACCTCTGTCTCTGATTCCCTAGC
TTCCACTACTACTTCCATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCT
CTGTTGCTACCTCTGTTTCTACCACCTCTGTCTCTGATTCTCTAGCTTCC
ACTACTACTTCCATCTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGT
TGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTA
CTACTTCTATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCT
CCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTAC
CATTTCTGATGCCTCTCTTCCTTCCTCTACTTGCTCTGTTGCTCCCTCTG
TTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTCCATC
TCTAATGTCCCACTTCTTTCCTCGAATNTATTTCTGATGCCCCTCTTCTT
TCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGA
TTCCCTAGatgaaaaaagacaacAAGACCGCAAGGAAAGAGCGAAGAAAA
GTCGCGGCATCAACTATTCGAACATTGAAGATGTCAGAAAGCGTAAAAGA
CGAGCGTACAATTGCAGCTAAACTTGgcttaaaaataagaaaagaaagat
ttgacgaaaaagaaaaGCTAATTGCTAGTCAACTTGGAATCAGTCAAAGG
CAATTTCAGCTGCAGAAGAAACAGAAGCTGTTGGATTCGAACGGCAATCC
CGTACAACCATCTGCTACCTCATCTGCAGTCACAACTGTCACTGCTACCT
CCAACCTTTCTGTTAATTCTGATGTCTCTGATACTTCTTTTTCCACTCTT
ACTGCCATCTCCGATTCCCCTCTTTCCTCGACTCTCTCTTTTGCTCCTTC
TGTTTCTACAGCCTCCACCGTCTCTGACGTCACCTCTGTCTCTGATTCCC
TAGCTTCCACTACTACTTCCATTTCTGATGCCCCTCTTCTTTCCTCTACT
TGCTCTGTTGCTACCTCTGTTTCTACCACCTCTGTCTCTGATTCTCTAGC
TTCCACTACTACTTCCATCTCTGATGCCCCTCTTCTTTCCTCTACTTGCT
CTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCC
ACTACTACTTCTATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGT
TGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTA
CTACCATTTCTGATGCCTCTCTTCCTTCCTCTACTTGCTCTGTTGCTCCC
TCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTC
CATCTCTAATGTCCCACTTCTTTCCTCGAATNTATTTCTGATGCCCCTCT
TCTTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCT
CTGATTCCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064549-exon-scaffold_419-1491911889:454367..454591 | TCONS_00064549-exon-scaffold_419-1491911889:454367..454591 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1510915933:454367..454591 | TCONS_00064549-exon-scaffold_419-1510915933:454367..454591 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1575043694:454367..454591 | TCONS_00064549-exon-scaffold_419-1575043694:454367..454591 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1491911889:454941..455044 | TCONS_00064549-exon-scaffold_419-1491911889:454941..455044 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1510915933:454941..455044 | TCONS_00064549-exon-scaffold_419-1510915933:454941..455044 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1575043694:454941..455044 | TCONS_00064549-exon-scaffold_419-1575043694:454941..455044 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1491911889:455751..457107 | TCONS_00064549-exon-scaffold_419-1491911889:455751..457107 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1510915933:455751..457107 | TCONS_00064549-exon-scaffold_419-1510915933:455751..457107 | Clytia hemisphaerica | exon |
| TCONS_00064549-exon-scaffold_419-1575043694:455751..457107 | TCONS_00064549-exon-scaffold_419-1575043694:455751..457107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:454367..457107 + |
Blast
The following BLAST results are available for this feature:
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