TCONS_00064549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064549
Unique NameTCONS_00064549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064549 ID=TCONS_00064549|Name=TCONS_00064549|organism=Clytia hemisphaerica|type=transcript|length=1686bp
CGGACATAATCGACAATCTCGAACCCTAGTACCTCTCCCCAGTTAATAAT
AAGTGGAAGGGGATACACCGGGTGAATAGCAGGAGCATTTTTATACTTGA
TTCTTTGATTCCTCTTTTTGATTTTCCAGGGCGTGCTCTCTGGAGAAATT
TCAGATCAGAGCagtcttaaaatgaaaaaagacaacAAGACCGCAAGGAA
AGAGCGAAGAAAAGTCGCGGCATCAACTATTCGAACATTGAAGATGTCAG
AAAGCGTAAAAGACGAGCGTACAATTGCAGCTAAACTTGgcttaaaaata
agaaaagaaagatttgacgaaaaagaaaaGCTAATTGCTAGTCAACTTGG
AATCAGTCAAAGGCAATTTCAGCTGCAGAAGAAACAGAAGCTGTTGGATT
CGAACGGCAATCCCGTACAACCATCTGCTACCTCATCTGCAGTCACAACT
GTCACTGCTACCTCCAACCTTTCTGTTAATTCTGATGTCTCTGATACTTC
TTTTTCCACTCTTACTGCCATCTCCGATTCCCCTCTTTCCTCGACTCTCT
CTTTTGCTCCTTCTGTTTCTACAGCCTCCACCGTCTCTGACGTCACCTCT
GTCTCTGATTCCCTAGCTTCCACTACTACTTCCATTTCTGATGCCCCTCT
TCTTTCCTCTACTTGCTCTGTTGCTACCTCTGTTTCTACCACCTCTGTCT
CTGATTCTCTAGCTTCCACTACTACTTCCATCTCTGATGCCCCTCTTCTT
TCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGA
TTCCCTAGCTTCCACTACTACTTCTATTTCTGATGCCCCTCTTCTTTCCT
CTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCC
CTAGCTTCCACTACTACCATTTCTGATGCCTCTCTTCCTTCCTCTACTTG
CTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTT
CCACTACTACTTCCATCTCTAATGTCCCACTTCTTTCCTCGAATNTATTT
CTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCT
ACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCTGATGC
CTCTCTTCTTCCTTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCT
CTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCTGATGCCTCTCTT
CCTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTC
TGATTCCCTAGCTTCCACTACTACTTCCATCTCTAATGTCCCACTTCTTT
CCTCGAATTCTTCTGTTTCAAAAAGTGACAAGTGGTACCACAAAATTGAC
AGTTACCCACCCTTAAGATTGCACGTGGGTATGAATGTCGCCGTTGCGTA
CAAGCGGTTAGAATTTGCACGCGTGGTGGAAGAAGCCGAAATTGACGACC
ACCTAAACGAGGTGGTGAAACTTGAGTATTTCGAGATTACGAACAAAAAA
GAGGGCAGAATCAGGGAGAAGAAGAGGAGACCACTCGTCACGAAGGACGA
AACATATCACATCTTGCAGAGAATCTCTTTGAAAAAAGATGAAAACAACG
AGTACCTGATCGACAACTATGATGAAGTTCAAGAGC
Run BLAST on NCBI

protein sequence of TCONS_00064549-protein

>TCONS_00064549-protein ID=TCONS_00064549-protein|Name=TCONS_00064549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MKKDNKTARKERRKVAASTIRTLKMSESVKDERTIAAKLGLKIRKERFDE
KEKLIASQLGISQRQFQLQKKQKLLDSNGNPVQPSATSSAVTTVTATSNL
SVNSDVSDTSFSTLTAISDSPLSSTLSFAPSVSTASTVSDVTSVSDSLAS
TTTSISDAPLLSSTCSVATSVSTTSVSDSLASTTTSISDAPLLSSTCSVA
PSVSTTSVSDSLASTTTSISDAPLLSSTCSVAPSVSTTSVSDSLASTTTI
SDASLPSSTCSVAPSVSTTSVSDSLASTTTSISNVPLLSSNXFLMPLFFP
LLALLLPLFLPPLSLIP
Run BLAST on NCBI

transcript from alignment at scaffold_419:454367..457107+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064549 ID=TCONS_00064549|Name=TCONS_00064549|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_419:454367..457107+ (Clytia hemisphaerica)
CGGACATAATCGACAATCTCGAACCCTAGTACCTCTCCCCAGTTAATAAT AAGTGGAAGGGGATACACCGGGTGAATAGCAGGAGCATTTTTATACTTGA TTCTTTGATTCCTCTTTTTGATTTTCCAGGGCGTGCTCTCTGGAGAAATT TCAGATCAGAGCagtcttaaaatgaaaaaagacaacAAGACCGCAAGGAA AGAGCGAAGAAAAGTCGCGGCATCAGTAAGTATATTTTCTCTGGTCCGAT ATTTACTTTCATTATGGTTCATTCCCTTAGGGCTCTTTACATCATAAATC TGTTTACtttattataagaatacaaGAACTTGAAAGCTCAGCGATGCTTA GGTAGAGGGCTTGACAAGGCTGTAAAATGATTATAAGGATGCTTATATCC CATGCAAAATTACagagaaattccgaaaatccgtaaaatcccACCCGAAA ACAGGCAAAATTAGAAGGCTAAGGTAATGCTTatcatatgcttaattttt aaaaattcatagACTATTCGAACATTGAAGATGTNACTTACAGTATCata tgcataatttttaaaaattcatagACTATTCGAACATTGAAGATGTCAGA AAGCGTAAAAGACGAGCGTACAATTGCAGCTAAACTTGgcttaaaaataa gaaaagaaagatttgacgaaaaagaaaagtaagaaACATGCTTTTTAGTT TTTCTGAAATTGTCATTTATGATATGTTACAAGTCAGTATTTCTGTAACT TCTTAAAAAAGGCAAATAATTAATCCGTAATTCTGCACCCAACTTATCTT CTTCTCTTGTATATAAGTAAATGATTATACCCAAGGACCGAAACTTTTGC GCCAGATTTATGACTTTTCGGTAGATTACCCCTATTTTGAGGAagtagcg agattatgtatcggagatattctacggctacggttgcggggctgtCCATG CGGGTCGTCGCAAAAGGCGACATGttgttgtctactttgctctgtacggg aaaaacaccgtataagcaaagtcgacataatgccgtacgtcaaatatcga acttgctttcacccgccattacttgccttactcgccatttccctcgccgc TTTAACCGTAACCGTAGAGAACTTCAGATACATAATCTTGCTAGTGTGAC GTCCAGGGGGGTTCTGGTTTTTCGATTGtgaaatccagggtggtcagtaa aatgggATGAAAAAATCAGAGGGGGTCCTCgacaattgaaaaagaaatca aggGGTGGTAGAGACCGTGGTATTTCCAAAATAGCCTCCTCAATGTAGGT GGTTCAATTTTATTGTGGAAACTAGTAAGTGAAAGAGACTGATTTACAAA ATTCAAATAATTAGTTTCCCACTTTTATTTACAGGCTAATTGCTAGTCAA CTTGGAATCAGTCAAAGGCAATTTCAGCTGCAGAAGAAACAGAAGCTGTT GGATTCGAACGGCAATCCCGTACAACCATCTGCTACCTCATCTGCAGTCA CAACTGTCACTGCTACCTCCAACCTTTCTGTTAATTCTGATGTCTCTGAT ACTTCTTTTTCCACTCTTACTGCCATCTCCGATTCCCCTCTTTCCTCGAC TCTCTCTTTTGCTCCTTCTGTTTCTACAGCCTCCACCGTCTCTGACGTCA CCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTCCATTTCTGATGCC CCTCTTCTTTCCTCTACTTGCTCTGTTGCTACCTCTGTTTCTACCACCTC TGTCTCTGATTCTCTAGCTTCCACTACTACTTCCATCTCTGATGCCCCTC TTCTTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTC TCTGATTCCCTAGCTTCCACTACTACTTCTATTTCTGATGCCCCTCTTCT TTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTG ATTCCCTAGCTTCCACTACTACCATTTCTGATGCCTCTCTTCCTTCCTCT ACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCT AGCTTCCACTACTACTTCCATCTCTAATGTCCCACTTCTTTCCTCGAATN TATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCTCCCTCTG TTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCT GATGCCTCTCTTCTTCCTTCTACTTGCTCTGTTGCTCCCTCTGTTTCTAC CACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATTTCTGATGCCT CTCTTCCTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCT GTCTCTGATTCCCTAGCTTCCACTACTACTTCCATCTCTAATGTCCCACT TCTTTCCTCGAATTCTTCTGTTTCAAAAAGTGACAAGTGGTACCACAAAA TTGACAGTTACCCACCCTTAAGATTGCACGTGGGTATGAATGTCGCCGTT GCGTACAAGCGGTTAGAATTTGCACGCGTGGTGGAAGAAGCCGAAATTGA CGACCACCTAAACGAGGTGGTGAAACTTGAGTATTTCGAGATTACGAACA AAAAAGAGGGCAGAATCAGGGAGAAGAAGAGGAGACCACTCGTCACGAAG GACGAAACATATCACATCTTGCAGAGAATCTCTTTGAAAAAAGATGAAAA CAACGAGTACCTGATCGACAACTATGATGAAGTTCAAGAGC

Coding sequence (CDS) from alignment at scaffold_419:454367..457107+

>TCONS_00064549 ID=TCONS_00064549|Name=TCONS_00064549|organism=Clytia hemisphaerica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_419:454367..457107+ (Clytia hemisphaerica)
atgaaaaaagacaacAAGACCGCAAGGAAAGAGCGAAGAAAAGTCGCGGC
ATCAACTATTCGAACATTGAAGATGTCAGAAAGCGTAAAAGACGAGCGTA
CAATTGCAGCTAAACTTGgcttaaaaataagaaaagaaagatttgacgaa
aaagaaaaGCTAATTGCTAGTCAACTTGGAATCAGTCAAAGGCAATTTCA
GCTGCAGAAGAAACAGAAGCTGTTGGATTCGAACGGCAATCCCGTACAAC
CATCTGCTACCTCATCTGCAGTCACAACTGTCACTGCTACCTCCAACCTT
TCTGTTAATTCTGATGTCTCTGATACTTCTTTTTCCACTCTTACTGCCAT
CTCCGATTCCCCTCTTTCCTCGACTCTCTCTTTTGCTCCTTCTGTTTCTA
CAGCCTCCACCGTCTCTGACGTCACCTCTGTCTCTGATTCCCTAGCTTCC
ACTACTACTTCCATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGT
TGCTACCTCTGTTTCTACCACCTCTGTCTCTGATTCTCTAGCTTCCACTA
CTACTTCCATCTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCT
CCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTAC
TTCTATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCTCCCT
CTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACCATT
TCTGATGCCTCTCTTCCTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTC
TACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTCCATCTCTA
ATGTCCCACTTCTTTCCTCGAATNTATTTCTGATGCCCCTCTTCTTTCCT
CTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCC
CTAGatgaaaaaagacaacAAGACCGCAAGGAAAGAGCGAAGAAAAGTCG
CGGCATCAACTATTCGAACATTGAAGATGTCAGAAAGCGTAAAAGACGAG
CGTACAATTGCAGCTAAACTTGgcttaaaaataagaaaagaaagatttga
cgaaaaagaaaaGCTAATTGCTAGTCAACTTGGAATCAGTCAAAGGCAAT
TTCAGCTGCAGAAGAAACAGAAGCTGTTGGATTCGAACGGCAATCCCGTA
CAACCATCTGCTACCTCATCTGCAGTCACAACTGTCACTGCTACCTCCAA
CCTTTCTGTTAATTCTGATGTCTCTGATACTTCTTTTTCCACTCTTACTG
CCATCTCCGATTCCCCTCTTTCCTCGACTCTCTCTTTTGCTCCTTCTGTT
TCTACAGCCTCCACCGTCTCTGACGTCACCTCTGTCTCTGATTCCCTAGC
TTCCACTACTACTTCCATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCT
CTGTTGCTACCTCTGTTTCTACCACCTCTGTCTCTGATTCTCTAGCTTCC
ACTACTACTTCCATCTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGT
TGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTA
CTACTTCTATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGTTGCT
CCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTAC
CATTTCTGATGCCTCTCTTCCTTCCTCTACTTGCTCTGTTGCTCCCTCTG
TTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTCCATC
TCTAATGTCCCACTTCTTTCCTCGAATNTATTTCTGATGCCCCTCTTCTT
TCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGA
TTCCCTAGatgaaaaaagacaacAAGACCGCAAGGAAAGAGCGAAGAAAA
GTCGCGGCATCAACTATTCGAACATTGAAGATGTCAGAAAGCGTAAAAGA
CGAGCGTACAATTGCAGCTAAACTTGgcttaaaaataagaaaagaaagat
ttgacgaaaaagaaaaGCTAATTGCTAGTCAACTTGGAATCAGTCAAAGG
CAATTTCAGCTGCAGAAGAAACAGAAGCTGTTGGATTCGAACGGCAATCC
CGTACAACCATCTGCTACCTCATCTGCAGTCACAACTGTCACTGCTACCT
CCAACCTTTCTGTTAATTCTGATGTCTCTGATACTTCTTTTTCCACTCTT
ACTGCCATCTCCGATTCCCCTCTTTCCTCGACTCTCTCTTTTGCTCCTTC
TGTTTCTACAGCCTCCACCGTCTCTGACGTCACCTCTGTCTCTGATTCCC
TAGCTTCCACTACTACTTCCATTTCTGATGCCCCTCTTCTTTCCTCTACT
TGCTCTGTTGCTACCTCTGTTTCTACCACCTCTGTCTCTGATTCTCTAGC
TTCCACTACTACTTCCATCTCTGATGCCCCTCTTCTTTCCTCTACTTGCT
CTGTTGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCC
ACTACTACTTCTATTTCTGATGCCCCTCTTCTTTCCTCTACTTGCTCTGT
TGCTCCCTCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTA
CTACCATTTCTGATGCCTCTCTTCCTTCCTCTACTTGCTCTGTTGCTCCC
TCTGTTTCTACCACCTCTGTCTCTGATTCCCTAGCTTCCACTACTACTTC
CATCTCTAATGTCCCACTTCTTTCCTCGAATNTATTTCTGATGCCCCTCT
TCTTTCCTCTACTTGCTCTGTTGCTCCCTCTGTTTCTACCACCTCTGTCT
CTGATTCCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040484XLOC_040484Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064549-proteinTCONS_00064549-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064549-exon-scaffold_419-1491911889:454367..454591TCONS_00064549-exon-scaffold_419-1491911889:454367..454591Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1510915933:454367..454591TCONS_00064549-exon-scaffold_419-1510915933:454367..454591Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1575043694:454367..454591TCONS_00064549-exon-scaffold_419-1575043694:454367..454591Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1491911889:454941..455044TCONS_00064549-exon-scaffold_419-1491911889:454941..455044Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1510915933:454941..455044TCONS_00064549-exon-scaffold_419-1510915933:454941..455044Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1575043694:454941..455044TCONS_00064549-exon-scaffold_419-1575043694:454941..455044Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1491911889:455751..457107TCONS_00064549-exon-scaffold_419-1491911889:455751..457107Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1510915933:455751..457107TCONS_00064549-exon-scaffold_419-1510915933:455751..457107Clytia hemisphaericaexon
TCONS_00064549-exon-scaffold_419-1575043694:455751..457107TCONS_00064549-exon-scaffold_419-1575043694:455751..457107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:454367..457107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.34767 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.0532157 0.0323925 0.127985 0 0.144555 0.0404826 0.0501443 0.194685 0.143976 0.287551 0.182493 0.0818366 0.219558 0 0.0554461 0 0 0 0 0.055082 0 1.72789 2.34767 0 0 0.106642 0.0814884
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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