|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064614 ID=TCONS_00064614|Name=TCONS_00064614|organism=Clytia hemisphaerica|type=transcript|length=2091bp
atgcaaaaaaaatttcattagtGGAAAAGGAAGATCTGGTGGTGTCAAAC
AAAAACAGGTCAATACAATAAGAGGCATAACATTTGAACGATAAGAATTT
AAAAAGGAAGTTTGAAATTGCAGAGTATTCATTAATTATTAATCAAGTCT
CCAGTCAGGAAAGCTCTTGCATGAATTTCTTCCTTTTCATTGTGGGAGAC
TTTGACTTTACTGTAGATTTTCTGGATAAAGTATATGGTATATGGGATAT
TGGAGTGATATTTGAGACACGTTGTATTGCATCAAAACTAAAGACAATAA
AAACGCAATATTGAAATAAAGCTGCTGCtggaaaagtaaaaaagaagacT
GTACAGATTGACCTTCAAGGGTAAAGAGACACCTGGGTAAAGCAAGGAAG
AGaattgatgatgatttttgtacgaagtttattattattaacaTTATCAT
TCAGTCTTGGATTTTCGCTTAGTTTACCAAACGTTCAGCGCGATTTTGCA
GATCCTGCCGACTCAAAACCAAGGATGAATGAAAAATCAACTCCCCAAAA
CACCACCATGACGCCATTATGGATTCTTGGAAAAACTGCTAAAACTGGAC
AGGAAGGAGCTGGCAGCAGTAAGGAGGTAGCAGGCAAACCATTTGATGAA
ATAGGCTCAAATGACAACGACACCTACATTATTCTACCTGAGAATGGAAC
AGCTATGGAGGTTCTCTGTGGACATTTAGAAATCGACCCATCAGATTGTA
CTTGCAAGAAAATTGAAGAGATTATACCTGGGTACTGCGAACCAGAAGAG
TTACCCTGCCAAGTTGACTCGTCAGATATTGCAGAGAAATCCTTAATCGT
CTTTATATCTATCTTAGGTATAATCGGTAACATCCTAGTCTTGATCGTAC
GCGTCCGAAATTGGAAGAAATCCTTACATTACCGGCTCATCAGTGGCCTC
GCGCTCGCAGATTTGACTTTTTGTTGTATGTTTTTGTTTATCTCGATCCC
GGCAATTTGGCTCTGTCGTTGGCCTCTTGGGAAATTTTTATGCACCCTGT
TAAGAACAATCCTGTTCATGAGCTCCAATGTCGACTTAGGATTTATTCTG
ATTATCGCTATTGAACGGTATATTGGAATAGTTCATCCGTTCCAGGGTGG
CGCCTCGGCTTGTAAAATCTATTGTATGGTTGGTATCAACCTGTTGGCAA
GCTTCCTGGCTGGATTTCCATTCTTCTTTATATTCAAAGTAGATTCCAGT
GGCAAATGCACTGAAGATTGGTCGATGTTTCTGTCAAACGCATCTTACGT
TTACGGTTGGGTCAGTAATATTTTCCTGTTCCTTATCCCTATTATTATCA
CCGCCTTGTTATACTGGCGTGGTTTGAAGACCCTCAAATCGACCCTGTTT
CGCCAAGAGATGATGTTAACGTTAGACGAAGCTTCCCGTAAAAATTTGGT
CAGTGAAAATCACCGTATTTTACGCATCATTTCAACCATCTTGCTTGCTT
TCCTCCTATTGGTTGGCCCGAATCACGTGGCATGGTTTTTAAGTGATAAT
TTCACTTTAGCCGGTGGTTCACGTttagttttcttcaaaatttcatccGT
CGCTTACGCTATTCATACAAGTATCAACCCTATCATTTATTCCATTATTG
ATCGAAAGTTCCGCCGCAACGTCTATTACATGTTACGTAAAGGGAGACGC
CGTAAGTCCTTCACTACGACTGCGACCGCTGTTCATTTTTCACCAGTTCA
CACTCAAGTTATGATTGAAAATGGTAACGGCTCTTTAGGATCGGCCGTCG
GCTCTTCGCGGCCAAACAGTAGGACTAGTATACGAAACGGTGAACAACCA
TTGGAATTGACTGAACAACCCGTTTGAGAGAAatgtttttaagaaaatat
ttaaaaatgtgAATGATTCGCCACGGCTGCTAGAAAACGTCAAAGCAGAT
GGACACATCCATAAACCGttaaatgaacattgaaacaacgtggTTGTGTA
CCGGTTACCATGGCAACAGTGACATGACTATTGCATGATTTTGATAAGAA
AACTACCGCCTTTTTTGGAGATTACATGCTGATTTAGAAAT Run BLAST on NCBI protein sequence of TCONS_00064614-protein >TCONS_00064614-protein ID=TCONS_00064614-protein|Name=TCONS_00064614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
MMIFVRSLLLLTLSFSLGFSLSLPNVQRDFADPADSKPRMNEKSTPQNTT
MTPLWILGKTAKTGQEGAGSSKEVAGKPFDEIGSNDNDTYIILPENGTAM
EVLCGHLEIDPSDCTCKKIEEIIPGYCEPEELPCQVDSSDIAEKSLIVFI
SILGIIGNILVLIVRVRNWKKSLHYRLISGLALADLTFCCMFLFISIPAI
WLCRWPLGKFLCTLLRTILFMSSNVDLGFILIIAIERYIGIVHPFQGGAS
ACKIYCMVGINLLASFLAGFPFFFIFKVDSSGKCTEDWSMFLSNASYVYG
WVSNIFLFLIPIIITALLYWRGLKTLKSTLFRQEMMLTLDEASRKNLVSE
NHRILRIISTILLAFLLLVGPNHVAWFLSDNFTLAGGSRLVFFKISSVAY
AIHTSINPIIYSIIDRKFRRNVYYMLRKGRRRKSFTTTATAVHFSPVHTQ
VMIENGNGSLGSAVGSSRPNSRTSIRNGEQPLELTEQPV Run BLAST on NCBI transcript from alignment at scaffold_419:345396..347486 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064614 ID=TCONS_00064614|Name=TCONS_00064614|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at scaffold_419:345396..347486 (Clytia hemisphaerica)
ATTTCTAAATCAGCATGTAATCTCCAAAAAAGGCGGTAGTTTTCTTATCA
AAATCATGCAATAGTCATGTCACTGTTGCCATGGTAACCGGTACACAAcc
acgttgtttcaatgttcatttaaCGGTTTATGGATGTGTCCATCTGCTTT
GACGTTTTCTAGCAGCCGTGGCGAATCATTcacatttttaaatattttct
taaaaacatTTCTCTCAAACGGGTTGTTCAGTCAATTCCAATGGTTGTTC
ACCGTTTCGTATACTAGTCCTACTGTTTGGCCGCGAAGAGCCGACGGCCG
ATCCTAAAGAGCCGTTACCATTTTCAATCATAACTTGAGTGTGAACTGGT
GAAAAATGAACAGCGGTCGCAGTCGTAGTGAAGGACTTACGGCGTCTCCC
TTTACGTAACATGTAATAGACGTTGCGGCGGAACTTTCGATCAATAATGG
AATAAATGATAGGGTTGATACTTGTATGAATAGCGTAAGCGACggatgaa
attttgaagaaaactaaACGTGAACCACCGGCTAAAGTGAAATTATCACT
TAAAAACCATGCCACGTGATTCGGGCCAACCAATAGGAGGAAAGCAAGCA
AGATGGTTGAAATGATGCGTAAAATACGGTGATTTTCACTGACCAAATTT
TTACGGGAAGCTTCGTCTAACGTTAACATCATCTCTTGGCGAAACAGGGT
CGATTTGAGGGTCTTCAAACCACGCCAGTATAACAAGGCGGTGATAATAA
TAGGGATAAGGAACAGGAAAATATTACTGACCCAACCGTAAACGTAAGAT
GCGTTTGACAGAAACATCGACCAATCTTCAGTGCATTTGCCACTGGAATC
TACTTTGAATATAAAGAAGAATGGAAATCCAGCCAGGAAGCTTGCCAACA
GGTTGATACCAACCATACAATAGATTTTACAAGCCGAGGCGCCACCCTGG
AACGGATGAACTATTCCAATATACCGTTCAATAGCGATAATCAGAATAAA
TCCTAAGTCGACATTGGAGCTCATGAACAGGATTGTTCTTAACAGGGTGC
ATAAAAATTTCCCAAGAGGCCAACGACAGAGCCAAATTGCCGGGATCGAG
ATAAACAAAAACATACAACAAAAAGTCAAATCTGCGAGCGCGAGGCCACT
GATGAGCCGGTAATGTAAGGATTTCTTCCAATTTCGGACGCGTACGATCA
AGACTAGGATGTTACCGATTATACCTAAGATAGATATAAAGACGATTAAG
GATTTCTCTGCAATATCTGACGAGTCAACTTGGCAGGGTAACTCTTCTGG
TTCGCAGTACCCAGGTATAATCTCTTCAATTTTCTTGCAAGTACAATCTG
ATGGGTCGATTTCTAAATGTCCACAGAGAACCTCCATAGCTGTTCCATTC
TCAGGTAGAATAATGTAGGTGTCGTTGTCATTTGAGCCTATTTCATCAAA
TGGTTTGCCTGCTACCTCCTTACTGCTGCCAGCTCCTTCCTGTCCAGTTT
TAGCAGTTTTTCCAAGAATCCATAATGGCGTCATGGTGGTGTTTTGGGGA
GTTGATTTTTCATTCATCCTTGGTTTTGAGTCGGCAGGATCTGCAAAATC
GCGCTGAACGTTTGGTAAACTAAGCGAAAATCCAAGACTGAATGATAAtg
ttaataataataaacttcgtacaaaaatcatcatcaattCTCTTCCTTGC
TTTACCCAGGTGTCTCTTTACCCTTGAAGGTCAATCTGTACAgtcttctt
ttttacttttccaGCAGCAGCTTTATTTCAATATTGCGTTTTTATTGTCT
TTAGTTTTGATGCAATACAACGTGTCTCAAATATCACTCCAATATCCCAT
ATACCATATACTTTATCCAGAAAATCTACAGTAAAGTCAAAGTCTCCCAC
AATGAAAAGGAAGAAATTCATGCAAGAGCTTTCCTGACTGGAGACTTGAT
TAATAATTAATGAATACTCTGCAATTTCAAACTTCCTTTTTAAATTCTTA
TCGTTCAAATGTTATGCCTCTTATTGTATTGACCTGTTTTTGTTTGACAC
CACCAGATCTTCCTTTTCCactaatgaaattttttttgcat Coding sequence (CDS) from alignment at scaffold_419:345396..347486 >TCONS_00064614 ID=TCONS_00064614|Name=TCONS_00064614|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_419:345396..347486 (Clytia hemisphaerica)
TCAAACGGGTTGTTCAGTCAATTCCAATGGTTGTTCACCGTTTCGTATAC
TAGTCCTACTGTTTGGCCGCGAAGAGCCGACGGCCGATCCTAAAGAGCCG
TTACCATTTTCAATCATAACTTGAGTGTGAACTGGTGAAAAATGAACAGC
GGTCGCAGTCGTAGTGAAGGACTTACGGCGTCTCCCTTTACGTAACATGT
AATAGACGTTGCGGCGGAACTTTCGATCAATAATGGAATAAATGATAGGG
TTGATACTTGTATGAATAGCGTAAGCGACggatgaaattttgaagaaaac
taaACGTGAACCACCGGCTAAAGTGAAATTATCACTTAAAAACCATGCCA
CGTGATTCGGGCCAACCAATAGGAGGAAAGCAAGCAAGATGGTTGAAATG
ATGCGTAAAATACGGTGATTTTCACTGACCAAATTTTTACGGGAAGCTTC
GTCTAACGTTAACATCATCTCTTGGCGAAACAGGGTCGATTTGAGGGTCT
TCAAACCACGCCAGTATAACAAGGCGGTGATAATAATAGGGATAAGGAAC
AGGAAAATATTACTGACCCAACCGTAAACGTAAGATGCGTTTGACAGAAA
CATCGACCAATCTTCAGTGCATTTGCCACTGGAATCTACTTTGAATATAA
AGAAGAATGGAAATCCAGCCAGGAAGCTTGCCAACAGGTTGATACCAACC
ATACAATAGATTTTACAAGCCGAGGCGCCACCCTGGAACGGATGAACTAT
TCCAATATACCGTTCAATAGCGATAATCAGAATAAATCCTAAGTCGACAT
TGGAGCTCATGAACAGGATTGTTCTTAACAGGGTGCATAAAAATTTCCCA
AGAGGCCAACGACAGAGCCAAATTGCCGGGATCGAGATAAACAAAAACAT
ACAACAAAAAGTCAAATCTGCGAGCGCGAGGCCACTGATGAGCCGGTAAT
GTAAGGATTTCTTCCAATTTCGGACGCGTACGATCAAGACTAGGATGTTA
CCGATTATACCTAAGATAGATATAAAGACGATTAAGGATTTCTCTGCAAT
ATCTGACGAGTCAACTTGGCAGGGTAACTCTTCTGGTTCGCAGTACCCAG
GTATAATCTCTTCAATTTTCTTGCAAGTACAATCTGATGGGTCGATTTCT
AAATGTCCACAGAGAACCTCCATAGCTGTTCCATTCTCAGGTAGAATAAT
GTAGGTGTCGTTGTCATTTGAGCCTATTTCATCAAATGGTTTGCCTGCTA
CCTCCTTACTGCTGCCAGCTCCTTCCTGTCCAGTTTTAGCAGTTTTTCCA
AGAATCCATAATGGCGTCATGGTGGTGTTTTGGGGAGTTGATTTTTCATT
CATCCTTGGTTTTGAGTCGGCAGGATCTGCAAAATCGCGCTGAACGTTTG
GTAAACTAAGCGAAAATCCAAGACTGAATGATAAtgttaataataataaa
cttcgtacaaaaatcatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064614-exon-scaffold_419-1491911889:345396..347486 | TCONS_00064614-exon-scaffold_419-1491911889:345396..347486 | Clytia hemisphaerica | exon |
| TCONS_00064614-exon-scaffold_419-1510915933:345396..347486 | TCONS_00064614-exon-scaffold_419-1510915933:345396..347486 | Clytia hemisphaerica | exon |
| TCONS_00064614-exon-scaffold_419-1575043694:345396..347486 | TCONS_00064614-exon-scaffold_419-1575043694:345396..347486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:345396..347486 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
