TCONS_00064784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064784
Unique NameTCONS_00064784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064784 ID=TCONS_00064784|Name=TCONS_00064784|organism=Clytia hemisphaerica|type=transcript|length=1668bp
ACACACCACAATAACCGACATGtaacttatctggcacccaggtgcagaaa
ttttcatccgacacgctaaagctctgaaggttggGANTACGTTCCCACTC
GATCCAGCTCTCTCCAAATGTATCTTAGCTGCCAAAGAGAACGATTGTGT
AGAGGAAATGGTCACGGTTCTATCCATCCTATCTGTTGACTCACTCACCT
ACATTCCACCATCAGAAAGAGAGCGTGGCCGTAAGGTTTCGCAACGATTT
TCAGCTAGTGAGGGTGACCAANGTTTAGATTACGGgattttgcaagaccg
cgtcaaggattttgcagcgggaggcctggtaacccagccctcgttttcgg
ggattggggggggggtccaaccgaaatatttttagaattaCGACCAAGGG
CAGTTAAACCCGACTGGGGATGTGATACATCAAAGGCCGACCATCATTCC
TCTCCGTCGGGAAATTGGCCCACTCAtgtagagctttagcgtgggccaTC
GGAATATCTANTGTTTCGCGAATACAAGAAAATGAAAGGTAACCAAATGT
GGTGCCGTGAAAATTTCATCGACGGCAAAACTATGAAGACTGTGCGGCAA
ATCAGAAATCAGTTAAAAGAACTCTGTCATAAGTTGGAAATCCCGTTAAC
GAGTAGTAAGCAAGATCAATACAAATCGCTACGGAAATCACTTTGTTCCG
GTTTATTTTTCAATAGTGCGGAGAGGCAATCTGACGGAACTTACGTGACT
CTGATGCAAAAAACAATCGTTCACATCCATCCTTCGtctgttttgtttcg
agagaaACCATCGTTTGTTGTTTTCAACGAATTGGTTGAAACGTCGAAAA
GATACATGAGAGGGTTGTGTGTTGTTGATCCGCTATGGTTGATCGAAGCT
TGTCCGTCACGTTTTGAGAATTGTAAACTTTTACCTGAGACTATAACCTC
ATGATTACATTATACTATAAAGTACTGTAATTCAAAGACGAAGTGACTTT
CAAAACAATATATACCCCCTGTATACCACctaaatttttcaaccaatctt
AATAATATGAAGGACCTATAAGCACTGTTGGGGATGAAATAAGCACtgtt
aactcccagcggattttattaaaactacttcctacttataaaaaagttat
ttaatttctcaagagacataatcacgAACCCATAATgatgataatttgtt
ttggattGATTTCTTTGTCGGTGATATTATATTGTTCTTGTATTGGTATT
TTCGACTTTTGTAGAATTTTTTAGGAAATACAATCATACAAGAAGTACTG
AACTTTCCATGctttgtaagaattaaaatGAAGTTAACTTCAGGTTCTAT
AGTATTTTTATGATAGagtttaaagtctgtctcaatataatttgcagtgg
AGACAATATAAGATtcgaatacactcttctcgagatgcataaatttattg
ttgtcctcgttttcaaacagatttcattgctgtgaaattatacatttaaa
ccgatttaaattcccaaaaggcaaacattaactctaaaacaaaagtactt
taaattcaaaatgtctcatgaggtgtaaacaacacaattatcattgtgaa
tatgtaattttatagcaatgaaatctgtttgaaaacgaggacaataataa
atttatgcatctcgaaaA
Run BLAST on NCBI

protein sequence of TCONS_00064784-protein

>TCONS_00064784-protein ID=TCONS_00064784-protein|Name=TCONS_00064784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MKGNQMWCRENFIDGKTMKTVRQIRNQLKELCHKLEIPLTSSKQDQYKSL
RKSLCSGLFFNSAERQSDGTYVTLMQKTIVHIHPSSVLFREKPSFVVFNE
LVETSKRYMRGLCVVDPLWLIEACPSRFENCKLLPETITS
Run BLAST on NCBI

transcript from alignment at scaffold_423:5699..7366

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064784 ID=TCONS_00064784|Name=TCONS_00064784|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_423:5699..7366 (Clytia hemisphaerica)
Ttttcgagatgcataaatttattattgtcctcgttttcaaacagatttca
ttgctataaaattacatattcacaatgataattgtgttgtttacacctca
tgagacattttgaatttaaagtacttttgttttagagttaatgtttgcct
tttgggaatttaaatcggtttaaatgtataatttcacagcaatgaaatct
gtttgaaaacgaggacaacaataaatttatgcatctcgagaagagtgtat
tcgaATCTTATATTGTCTccactgcaaattatattgagacagactttaaa
ctCTATCATAAAAATACTATAGAACCTGAAGTTAACTTCattttaattct
tacaaagCATGGAAAGTTCAGTACTTCTTGTATGATTGTATTTCCTAAAA
AATTCTACAAAAGTCGAAAATACCAATACAAGAACAATATAATATCACCG
ACAAAGAAATCaatccaaaacaaattatcatcATTATGGGTTcgtgatta
tgtctcttgagaaattaaataacttttttataagtaggaagtagttttaa
taaaatccgctgggagttaacaGTGCTTATTTCATCCCCAACAGTGCTTA
TAGGTCCTTCATATTATTaagattggttgaaaaatttagGTGGTATACAG
GGGGTATATATTGTTTTGAAAGTCACTTCGTCTTTGAATTACAGTACTTT
ATAGTATAATGTAATCATGAGGTTATAGTCTCAGGTAAAAGTTTACAATT
CTCAAAACGTGACGGACAAGCTTCGATCAACCATAGCGGATCAACAACAC
ACAACCCTCTCATGTATCTTTTCGACGTTTCAACCAATTCGTTGAAAACA
ACAAACGATGGTttctctcgaaacaaaacagaCGAAGGATGGATGTGAAC
GATTGTTTTTTGCATCAGAGTCACGTAAGTTCCGTCAGATTGCCTCTCCG
CACTATTGAAAAATAAACCGGAACAAAGTGATTTCCGTAGCGATTTGTAT
TGATCTTGCTTACTACTCGTTAACGGGATTTCCAACTTATGACAGAGTTC
TTTTAACTGATTTCTGATTTGCCGCACAGTCTTCATAGTTTTGCCGTCGA
TGAAATTTTCACGGCACCACATTTGGTTACCTTTCATTTTCTTGTATTCG
CGAAACANTAGATATTCCGAtggcccacgctaaagctctacaTGAGTGGG
CCAATTTCCCGACGGAGAGGAATGATGGTCGGCCTTTGATGTATCACATC
CCCAGTCGGGTTTAACTGCCCTTGGTCGtaattctaaaaatatttcggtt
ggaccccccccccaatccccgaaaacgagggctgggttaccaggcctccc
gctgcaaaatccttgacgcggtcttgcaaaatcCCGTAATCTAAACNTTG
GTCACCCTCACTAGCTGAAAATCGTTGCGAAACCTTACGGCCACGCTCTC
TTTCTGATGGTGGAATGTAGGTGAGTGAGTCAACAGATAGGATGGATAGA
ACCGTGACCATTTCCTCTACACAATCGTTCTCTTTGGCAGCTAAGATACA
TTTGGAGAGAGCTGGATCGAGTGGGAACGTANTCccaaccttcagagctt
tagcgtgtcggatgaaaatttctgcacctgggtgccagataagttaCATG
TCGGTTATTGTGGTGTGT

Coding sequence (CDS) from alignment at scaffold_423:5699..7366

>TCONS_00064784 ID=TCONS_00064784|Name=TCONS_00064784|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_423:5699..7366 (Clytia hemisphaerica)
TCATGAGGTTATAGTCTCAGGTAAAAGTTTACAATTCTCAAAACGTGACG
GACAAGCTTCGATCAACCATAGCGGATCAACAACACACAACCCTCTCATG
TATCTTTTCGACGTTTCAACCAATTCGTTGAAAACAACAAACGATGGTtt
ctctcgaaacaaaacagaCGAAGGATGGATGTGAACGATTGTTTTTTGCA
TCAGAGTCACGTAAGTTCCGTCAGATTGCCTCTCCGCACTATTGAAAAAT
AAACCGGAACAAAGTGATTTCCGTAGCGATTTGTATTGATCTTGCTTACT
ACTCGTTAACGGGATTTCCAACTTATGACAGAGTTCTTTTAACTGATTTC
TGATTTGCCGCACAGTCTTCATAGTTTTGCCGTCGATGAAATTTTCACGG
CACCACATTTGGTTACCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040626XLOC_040626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064784-proteinTCONS_00064784-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064784-exon-scaffold_423-1491911889:5699..7366TCONS_00064784-exon-scaffold_423-1491911889:5699..7366Clytia hemisphaericaexon
TCONS_00064784-exon-scaffold_423-1510915933:5699..7366TCONS_00064784-exon-scaffold_423-1510915933:5699..7366Clytia hemisphaericaexon
TCONS_00064784-exon-scaffold_423-1575043694:5699..7366TCONS_00064784-exon-scaffold_423-1575043694:5699..7366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:5699..7366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.22116	9.32959	3.54986	2.80163	4.89412	3.3862	10.6552	12.194	8.64389	8.70499	9.58399	7.95448	7.29473	9.41838	6.75187	7.90266	7.13068	8.19992	4.28949	4.47987	6.47994	6.60195	15.2416	13.9806	12.7543	14.3726	3.61636	4.12433	9.93323	10.7663
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011709DUF1605
Blast
[Close]
BLAST of TCONS_00064784 vs. Swiss-Prot (Human)
Match: DHX33 (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.660e-34
Identity = 64/134 (47.76%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:  514 FREYKKMKGNQMWCRENFIDGKTMKTVRQIRNQLKELCHKLEIPLTSSKQDQYKSLRKSLCSGLFFNSAERQSDGTYVTLMQKTIVHIHPSSVLFREKPSFVVFNELVETSKRYMRGLCVVDPLWLIEACPSRF 915
            +R +K + GN+ WC+ENF++ K M  V ++R QL+++C K+ +P+ SS+ D  +S+R+ L   LF ++AE Q DGTY T      V IHPSSVLF  KP+ VV+ EL+ T+K YMR LCV+D  WL EA P  F
Sbjct:  566 YRTFKNLGGNKDWCKENFVNSKNMTLVAEVRAQLRDICLKMSMPIASSRGD-VESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYF 698
The following BLAST results are available for this feature:
BLAST of TCONS_00064784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX333.660e-3447.76Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
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