|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064784 ID=TCONS_00064784|Name=TCONS_00064784|organism=Clytia hemisphaerica|type=transcript|length=1668bp
ACACACCACAATAACCGACATGtaacttatctggcacccaggtgcagaaa
ttttcatccgacacgctaaagctctgaaggttggGANTACGTTCCCACTC
GATCCAGCTCTCTCCAAATGTATCTTAGCTGCCAAAGAGAACGATTGTGT
AGAGGAAATGGTCACGGTTCTATCCATCCTATCTGTTGACTCACTCACCT
ACATTCCACCATCAGAAAGAGAGCGTGGCCGTAAGGTTTCGCAACGATTT
TCAGCTAGTGAGGGTGACCAANGTTTAGATTACGGgattttgcaagaccg
cgtcaaggattttgcagcgggaggcctggtaacccagccctcgttttcgg
ggattggggggggggtccaaccgaaatatttttagaattaCGACCAAGGG
CAGTTAAACCCGACTGGGGATGTGATACATCAAAGGCCGACCATCATTCC
TCTCCGTCGGGAAATTGGCCCACTCAtgtagagctttagcgtgggccaTC
GGAATATCTANTGTTTCGCGAATACAAGAAAATGAAAGGTAACCAAATGT
GGTGCCGTGAAAATTTCATCGACGGCAAAACTATGAAGACTGTGCGGCAA
ATCAGAAATCAGTTAAAAGAACTCTGTCATAAGTTGGAAATCCCGTTAAC
GAGTAGTAAGCAAGATCAATACAAATCGCTACGGAAATCACTTTGTTCCG
GTTTATTTTTCAATAGTGCGGAGAGGCAATCTGACGGAACTTACGTGACT
CTGATGCAAAAAACAATCGTTCACATCCATCCTTCGtctgttttgtttcg
agagaaACCATCGTTTGTTGTTTTCAACGAATTGGTTGAAACGTCGAAAA
GATACATGAGAGGGTTGTGTGTTGTTGATCCGCTATGGTTGATCGAAGCT
TGTCCGTCACGTTTTGAGAATTGTAAACTTTTACCTGAGACTATAACCTC
ATGATTACATTATACTATAAAGTACTGTAATTCAAAGACGAAGTGACTTT
CAAAACAATATATACCCCCTGTATACCACctaaatttttcaaccaatctt
AATAATATGAAGGACCTATAAGCACTGTTGGGGATGAAATAAGCACtgtt
aactcccagcggattttattaaaactacttcctacttataaaaaagttat
ttaatttctcaagagacataatcacgAACCCATAATgatgataatttgtt
ttggattGATTTCTTTGTCGGTGATATTATATTGTTCTTGTATTGGTATT
TTCGACTTTTGTAGAATTTTTTAGGAAATACAATCATACAAGAAGTACTG
AACTTTCCATGctttgtaagaattaaaatGAAGTTAACTTCAGGTTCTAT
AGTATTTTTATGATAGagtttaaagtctgtctcaatataatttgcagtgg
AGACAATATAAGATtcgaatacactcttctcgagatgcataaatttattg
ttgtcctcgttttcaaacagatttcattgctgtgaaattatacatttaaa
ccgatttaaattcccaaaaggcaaacattaactctaaaacaaaagtactt
taaattcaaaatgtctcatgaggtgtaaacaacacaattatcattgtgaa
tatgtaattttatagcaatgaaatctgtttgaaaacgaggacaataataa
atttatgcatctcgaaaA Run BLAST on NCBI protein sequence of TCONS_00064784-protein >TCONS_00064784-protein ID=TCONS_00064784-protein|Name=TCONS_00064784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MKGNQMWCRENFIDGKTMKTVRQIRNQLKELCHKLEIPLTSSKQDQYKSL
RKSLCSGLFFNSAERQSDGTYVTLMQKTIVHIHPSSVLFREKPSFVVFNE
LVETSKRYMRGLCVVDPLWLIEACPSRFENCKLLPETITS Run BLAST on NCBI transcript from alignment at scaffold_423:5699..7366 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064784 ID=TCONS_00064784|Name=TCONS_00064784|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_423:5699..7366 (Clytia hemisphaerica)
Ttttcgagatgcataaatttattattgtcctcgttttcaaacagatttca
ttgctataaaattacatattcacaatgataattgtgttgtttacacctca
tgagacattttgaatttaaagtacttttgttttagagttaatgtttgcct
tttgggaatttaaatcggtttaaatgtataatttcacagcaatgaaatct
gtttgaaaacgaggacaacaataaatttatgcatctcgagaagagtgtat
tcgaATCTTATATTGTCTccactgcaaattatattgagacagactttaaa
ctCTATCATAAAAATACTATAGAACCTGAAGTTAACTTCattttaattct
tacaaagCATGGAAAGTTCAGTACTTCTTGTATGATTGTATTTCCTAAAA
AATTCTACAAAAGTCGAAAATACCAATACAAGAACAATATAATATCACCG
ACAAAGAAATCaatccaaaacaaattatcatcATTATGGGTTcgtgatta
tgtctcttgagaaattaaataacttttttataagtaggaagtagttttaa
taaaatccgctgggagttaacaGTGCTTATTTCATCCCCAACAGTGCTTA
TAGGTCCTTCATATTATTaagattggttgaaaaatttagGTGGTATACAG
GGGGTATATATTGTTTTGAAAGTCACTTCGTCTTTGAATTACAGTACTTT
ATAGTATAATGTAATCATGAGGTTATAGTCTCAGGTAAAAGTTTACAATT
CTCAAAACGTGACGGACAAGCTTCGATCAACCATAGCGGATCAACAACAC
ACAACCCTCTCATGTATCTTTTCGACGTTTCAACCAATTCGTTGAAAACA
ACAAACGATGGTttctctcgaaacaaaacagaCGAAGGATGGATGTGAAC
GATTGTTTTTTGCATCAGAGTCACGTAAGTTCCGTCAGATTGCCTCTCCG
CACTATTGAAAAATAAACCGGAACAAAGTGATTTCCGTAGCGATTTGTAT
TGATCTTGCTTACTACTCGTTAACGGGATTTCCAACTTATGACAGAGTTC
TTTTAACTGATTTCTGATTTGCCGCACAGTCTTCATAGTTTTGCCGTCGA
TGAAATTTTCACGGCACCACATTTGGTTACCTTTCATTTTCTTGTATTCG
CGAAACANTAGATATTCCGAtggcccacgctaaagctctacaTGAGTGGG
CCAATTTCCCGACGGAGAGGAATGATGGTCGGCCTTTGATGTATCACATC
CCCAGTCGGGTTTAACTGCCCTTGGTCGtaattctaaaaatatttcggtt
ggaccccccccccaatccccgaaaacgagggctgggttaccaggcctccc
gctgcaaaatccttgacgcggtcttgcaaaatcCCGTAATCTAAACNTTG
GTCACCCTCACTAGCTGAAAATCGTTGCGAAACCTTACGGCCACGCTCTC
TTTCTGATGGTGGAATGTAGGTGAGTGAGTCAACAGATAGGATGGATAGA
ACCGTGACCATTTCCTCTACACAATCGTTCTCTTTGGCAGCTAAGATACA
TTTGGAGAGAGCTGGATCGAGTGGGAACGTANTCccaaccttcagagctt
tagcgtgtcggatgaaaatttctgcacctgggtgccagataagttaCATG
TCGGTTATTGTGGTGTGT Coding sequence (CDS) from alignment at scaffold_423:5699..7366 >TCONS_00064784 ID=TCONS_00064784|Name=TCONS_00064784|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_423:5699..7366 (Clytia hemisphaerica)
TCATGAGGTTATAGTCTCAGGTAAAAGTTTACAATTCTCAAAACGTGACG
GACAAGCTTCGATCAACCATAGCGGATCAACAACACACAACCCTCTCATG
TATCTTTTCGACGTTTCAACCAATTCGTTGAAAACAACAAACGATGGTtt
ctctcgaaacaaaacagaCGAAGGATGGATGTGAACGATTGTTTTTTGCA
TCAGAGTCACGTAAGTTCCGTCAGATTGCCTCTCCGCACTATTGAAAAAT
AAACCGGAACAAAGTGATTTCCGTAGCGATTTGTATTGATCTTGCTTACT
ACTCGTTAACGGGATTTCCAACTTATGACAGAGTTCTTTTAACTGATTTC
TGATTTGCCGCACAGTCTTCATAGTTTTGCCGTCGATGAAATTTTCACGG
CACCACATTTGGTTACCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064784-exon-scaffold_423-1491911889:5699..7366 | TCONS_00064784-exon-scaffold_423-1491911889:5699..7366 | Clytia hemisphaerica | exon |
| TCONS_00064784-exon-scaffold_423-1510915933:5699..7366 | TCONS_00064784-exon-scaffold_423-1510915933:5699..7366 | Clytia hemisphaerica | exon |
| TCONS_00064784-exon-scaffold_423-1575043694:5699..7366 | TCONS_00064784-exon-scaffold_423-1575043694:5699..7366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:5699..7366 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011709 | DUF1605 |
Blast
BLAST of TCONS_00064784 vs. Swiss-Prot (Human)
Match: DHX33 (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 3.660e-34 Identity = 64/134 (47.76%), Postives = 90/134 (67.16%), Query Frame = 1
Query: 514 FREYKKMKGNQMWCRENFIDGKTMKTVRQIRNQLKELCHKLEIPLTSSKQDQYKSLRKSLCSGLFFNSAERQSDGTYVTLMQKTIVHIHPSSVLFREKPSFVVFNELVETSKRYMRGLCVVDPLWLIEACPSRF 915
+R +K + GN+ WC+ENF++ K M V ++R QL+++C K+ +P+ SS+ D +S+R+ L LF ++AE Q DGTY T V IHPSSVLF KP+ VV+ EL+ T+K YMR LCV+D WL EA P F
Sbjct: 566 YRTFKNLGGNKDWCKENFVNSKNMTLVAEVRAQLRDICLKMSMPIASSRGD-VESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYF 698
The following BLAST results are available for this feature:
|
