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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064843 ID=TCONS_00064843|Name=TCONS_00064843|organism=Clytia hemisphaerica|type=transcript|length=464bp
GTTTAGAGCAATTTACAAACTTGATTGTTGGAATTTGTGGGGAAAAGGAT
TTCGGTTTTAACCCTGTCAAACAAAGGATATACGGACAGTAGAACTATAT
TATAACTTTCGATTTCACCTCAAGGAAATGTCTGGTTTAGGATTTTCATT
GTGGCTACTGATTGTTTTCAACGGTTATTTATCTGGTGTCACAGCTTGGT
GGACGAGATGCGAAAAAGATGATTGCATAATGAGTAATTGGTCGCCATGG
TCACGCTGTTCCTTAGCAACAGGTATAGGCGTTCAAAATCGAAATCGCAC
GGTTGAGAAAATAATTGATGAAAAGTGCAAAGAGAAAGATTGCCCGAAAC
GCGTTGATCGAAGGAAGTGCTGTAAATCTAAATGCAGCAATTCCCATCAA
CCAACAATGTCTCCAAACTCTTTCACTTTCTCACAAATTCGAAGTTCCTT
GAAAAGCAATACAC Run BLAST on NCBI protein sequence of TCONS_00064843-protein >TCONS_00064843-protein ID=TCONS_00064843-protein|Name=TCONS_00064843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MSGLGFSLWLLIVFNGYLSGVTAWWTRCEKDDCIMSNWSPWSRCSLATGI
GVQNRNRTVEKIIDEKCKEKDCPKRVDRRKCCKSKCSNSHQPTMSPNSFT
FSQIRSSLKSNT Run BLAST on NCBI transcript from alignment at scaffold_425:213419..214841+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064843 ID=TCONS_00064843|Name=TCONS_00064843|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at scaffold_425:213419..214841+ (Clytia hemisphaerica)
GTTTAGAGCAATTTACAAACTTGATTGTTGGAATTTGTGGGGAAAAGGAT
TTCGGTTTTAACCCTGTCAAACAAAGGATATACGGACAGTAGAACTATAT
TATAACTTTCGATTTCACCTCAAGGAAATGTCTGGTTTAGGATTTTCATT
GTGGCTACTGATTGTTTTCAACGGTTATTTATCTGGTGTCACAGCTTGGT
GGACGAGATGCGAAAAAGATGATTGCATAATGAGTAATTGGTCGCCATGG
TCACGCTGTTCCTTAGCAACAGGTATAGGCGTTCAAAATCGAAATCGCAC
GGTTGAGAAAATAATTGATGAAAAGTGCAAAGAGAAAGATTGCCCGAAAC
GCGTTGATCGAAGGAAGTGCTGTAAATCTAAATGCAGGTAAGATTGAAAC
GTCTTTGTCTTTGAATGCAGAAAATGTTGACAATGCTCTCAATCAGTTct
catttcttttctttctaaAAACCAGGAATTACTAAAAAGAAAGATAGAGA
ATCGATTACAAATCAtcattctattcagcgcgcatcCAGCGagaacaaaa
gtaaccatgacaatCACCAATAACTTTCACAAGAATTTGCACCCAGCACC
GTGTGCGTTAAGGAATTCTTGATATTTATGACGTAGTCTTGAATACGGAA
ACACATGAAAAACACCAGGCGTTTGCCACtacttttcattgttttaaatt
caGTACTTTTCGGTCACGTGCGAAAATaacgatttttttcttttttgctt
aaCAATCATTTGAGCCTTGaaatctattttcattagcaaaCTAATACTTC
ATCGGCCCAGAAATGTCAAAGAACTTGAGACAGCCGGAAACAGATTTTGT
GACACCCATTGCTCGTATGTCTTATGTCCACAAGACAGTCTGAAATAACa
acatttctagaccagtaaaAATTGCCAAAGTCTTTCCGGTGTAGGCGGGG
TTTAATGACTTTTCGGGGTTAAATGACTTTAAATGACGTTAAATGACTTT
TCTGTACGCAGTGCAACATAGCGTTAGAATAATAGAATTAGAatcaaatt
tcatcgaaaataaaaatgttgaaaatctcTTTGTTGGGTGTCTAAAATTA
AAGACCTGTGTAAcctctatttttattttcaccttcaAAAGTCATGTcaa
attagcggacaccatttGGGAGTTAAAaaggtgtccgctaattggatgTG
TCCGTTTTATAGATTTATGTTTCAGAAGGGTTTGCTAGAAAAGTTGGGTC
CGCTATTTAAATAATGTTCGTTATTTAGAGTGACCGTTGATTGAAGGTTT
TACAGTATGTTGTTAAAgattaacaaaaaatattttctttcaacaGCAAT
TCCCATCAACCAACAATGTCTCCAAACTCTTTCACTTTCTCACAAATTCG
AAGTTCCTTGAAAAGCAATACAC Coding sequence (CDS) from alignment at scaffold_425:213419..214841+ >TCONS_00064843 ID=TCONS_00064843|Name=TCONS_00064843|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_425:213419..214841+ (Clytia hemisphaerica)
ATGTCTGGTTTAGGATTTTCATTGTGGCTACTGATTGTTTTCAACGGTTA
TTTATCTGGTGTCACAGCTTGGTGGACGAGATGCGAAAAAGATGATTGCA
TAATGAGTAATTGGTCGCCATGGTCACGCTGTTCCTTAGCAACAGGTATA
GGCGTTCAAAATCGAAATCGCACGGTTGAGAAAATAATTGATGAAAAGTG
CAAAGAGAAAGATTGCCCGAAACGCGTTGATCGAAGGAAGTGCTGTAAAT
CTAAATGCAGCAATTCCCATCAACCAACAATGTCTCCAAACTCTTTCACT
TTCTCACAAATTCGAAGTTCCTTGAAAAGCAATACAATGTCTGGTTTAGG
ATTTTCATTGTGGCTACTGATTGTTTTCAACGGTTATTTATCTGGTGTCA
CAGCTTGGTGGACGAGATGCGAAAAAGATGATTGCATAATGAGTAATTGG
TCGCCATGGTCACGCTGTTCCTTAGCAACAGGTATAGGCGTTCAAAATCG
AAATCGCACGGTTGAGAAAATAATTGATGAAAAGTGCAAAGAGAAAGATT
GCCCGAAACGCGTTGATCGAAGGAAGTGCTGTAAATCTAAATGCAGCAAT
TCCCATCAACCAACAATGTCTCCAAACTCTTTCACTTTCTCACAAATTCG
AAGTTCCTTGAAAAGCAATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064843-exon-scaffold_425-1491911889:213419..213805 | TCONS_00064843-exon-scaffold_425-1491911889:213419..213805 | Clytia hemisphaerica | exon |
| TCONS_00064843-exon-scaffold_425-1510915933:213419..213805 | TCONS_00064843-exon-scaffold_425-1510915933:213419..213805 | Clytia hemisphaerica | exon |
| TCONS_00064843-exon-scaffold_425-1575043694:213419..213805 | TCONS_00064843-exon-scaffold_425-1575043694:213419..213805 | Clytia hemisphaerica | exon |
| TCONS_00064843-exon-scaffold_425-1491911889:214765..214841 | TCONS_00064843-exon-scaffold_425-1491911889:214765..214841 | Clytia hemisphaerica | exon |
| TCONS_00064843-exon-scaffold_425-1510915933:214765..214841 | TCONS_00064843-exon-scaffold_425-1510915933:214765..214841 | Clytia hemisphaerica | exon |
| TCONS_00064843-exon-scaffold_425-1575043694:214765..214841 | TCONS_00064843-exon-scaffold_425-1575043694:214765..214841 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:213419..214841 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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