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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065038 ID=TCONS_00065038|Name=TCONS_00065038|organism=Clytia hemisphaerica|type=transcript|length=2133bpRun BLAST on NCBI protein sequence of TCONS_00065038-protein >TCONS_00065038-protein ID=TCONS_00065038-protein|Name=TCONS_00065038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp MSMLAEPRSRQKWSEDPRNTRWSSDKSKFGYQMLTKMGWSEGLGLGSTLQRun BLAST on NCBI transcript from alignment at scaffold_428:215207..243295- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065038 ID=TCONS_00065038|Name=TCONS_00065038|organism=Clytia hemisphaerica|type=transcript|length=28089bp|location=Sequence derived from alignment at scaffold_428:215207..243295- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_428:215207..243295- >TCONS_00065038 ID=TCONS_00065038|Name=TCONS_00065038|organism=Clytia hemisphaerica|type=CDS|length=10680bp|location=Sequence derived from alignment at scaffold_428:215207..243295- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065038 vs. Swiss-Prot (Human)
Match: PINX1 (PIN2/TERF1-interacting telomerase inhibitor 1 OS=Homo sapiens GN=PINX1 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 2.428e-40 Identity = 93/217 (42.86%), Postives = 127/217 (58.53%), Query Frame = 1
Query: 157 MSMLAEPRSRQKWSEDPRNTRWSSDKSKFGYQMLTKMGWSEGLGLGSTLQGHTSHVXXXXXXXXXXXXXXTSHDDDWIAHQDSFNALLSSLNT--GDAPSD------KKIQSLEDRVRVTRTKIMYSRFVKSKDLSRASNNDLACIFGQRSKSAPSTPQRXXXXXXXXXXXXTASCPTQKRAKDAKAGKSTTEHGFTTISSGVSVADYFASKMAALK 783
MSMLAE R +QKW+ DP+NT WS+D SKFG +ML KMGWS+G GLG+ QG T H+K++ K N G+G +++D+WIAHQD FN LL+ LNT G +D KK SLE++ ++++ ++ Y +F K KDLS S DL CIFG+R K+ + A ST E TT +S ++ +YFA +MAALK
Sbjct: 1 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQ---------------------------SKKTPEGDASPSTPEENETTTTSAFTIQEYFAKRMAALK 190 The following BLAST results are available for this feature:
BLAST of TCONS_00065038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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